mRNA_L-elsbetiae_contig14286.3179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14286.3179.1
Unique NamemRNA_L-elsbetiae_contig14286.3179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.640e-78
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +VQYCQG+NYI SLFLLYMPEENAFWMLVA+M R CAPLRELFLPGM+KAQEFQFVMDSLT KHC+KLSNQILA+NLTP+MYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK
Sbjct:  124 EVQYCQGVNYITSLFLLYMPEENAFWMLVATMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 247          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 6.690e-75
Identity = 115/124 (92.74%), Postives = 120/124 (96.77%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +VQYCQGINYI SLFLLYMPEENAFWMLVASM R CAPLRELFLPGM+KAQEFQFVMDSLT KHC+KLSNQILA+NLTP+MYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK
Sbjct:  477 EVQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 600          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.850e-46
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   19 GINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            GINYI +LFLLYMPEE AFWMLV  M R  APLRELFLPGM+KA+EF  VMDSLT K   KL   +  +++ P+MYA  WF+T FTQ FPY+L TR WD+FL EDWK+ YRVCLALFK
Sbjct:  466 GINYIAALFLLYMPEEEAFWMLVCVMHRPQAPLRELFLPGMLKAREFNHVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFK 583          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A7S2KF21_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KF21_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.470e-35
Identity = 66/124 (53.23%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ +I  +FL YMPEE AFW LV  M      LR+LF  GM  AQ+  +V D LT K   KL+      N+  SM+ATQW +T +T  FP+DLVTRVWD FL E WKV YRV LAL K
Sbjct:  206 EVGYCQGMGFIAGMFLTYMPEEQAFWQLVGVMNEEPCNLRDLFSVGMAGAQQVLYVADKLTRKVLPKLAKHFDRENVHISMFATQWLVTIYTSNFPFDLVTRVWDCFLYEGWKVVYRVMLALLK 329          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.800e-34
Identity = 61/124 (49.19%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ ++ ++FL YMPE+ AFW+LVA +      L +L+ P M K  E  FV + L  ++  +LS  + +  L P+MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:  197 EVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A0P1B616_PLAHL (Plant adhesion molecule 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B616_PLAHL)

HSP 1 Score: 130 bits (326), Expect = 6.020e-34
Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ +I ++FL YMPE+ AFW+LVA +      L +L+ P M K  E  +V   L  +    LS  +    L P+MY TQWFLT FT  FP+DLVTRVWD FL E WKV YRV LAL K
Sbjct:  184 EVGYCQGMGFISAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVLEVTYVFQGLLKQQMPHLSTHLENEGLHPTMYLTQWFLTLFTYNFPFDLVTRVWDAFLHEGWKVIYRVALALMK 307          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.590e-33
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ ++ ++FL YMPE+ AFW+LVA +      L +L+ P M K  E  FV + L  +   +LS  +    L P+MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:  148 EVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMK 271          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: A0A7S1G1I4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1I4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.400e-33
Identity = 59/121 (48.76%), Postives = 82/121 (67.77%), Query Frame = 1
Query:   10 YCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            YCQG+N++ ++FL+YM EE+AFWMLV  M      LREL+  GM+K+Q   +V   L   +  KL+      N+  +M+ATQWFLT ++  F +DLVTR+WD+FL+E WK+ YRV LAL K
Sbjct:  252 YCQGMNFVTAMFLMYMSEEDAFWMLVHVMNFEPCKLRELYTVGMIKSQRVLYVGSQLIKHYLPKLNRHFETENICYNMFATQWFLTIYSNSFSFDLVTRIWDIFLVEGWKIVYRVMLALLK 372          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: H3GE06_PHYRM (Rab-GAP TBC domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GE06_PHYRM)

HSP 1 Score: 127 bits (318), Expect = 8.120e-33
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ ++ ++FL YMPE+ AFW+LVA +      L +L+ P M K  E  FV  +L  +   +LS  +    L P+MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:  197 EVGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFQALLKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDSFLHEGWKVIYRVALALLK 320          
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT)

HSP 1 Score: 126 bits (317), Expect = 1.430e-32
Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKAQEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFK 372
            +V YCQG+ ++ ++FL YMPE+ AFW+LVA +      L +L+ P M K  E  F+ + L  +   +LS  +    L P+MY TQWFLT FT  FP++ VTRVWD FL E WKV YRV LAL K
Sbjct:  201 EVGYCQGMGFLTAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMK 324          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14286.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI2.640e-7891.13GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE6.690e-7592.74Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835YV67_9STRA5.850e-4666.95Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A7S2KF21_9STRA4.470e-3553.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A225W6Z9_9STRA5.800e-3449.19Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A0P1B616_PLAHL6.020e-3450.81Plant adhesion molecule 1 n=1 Tax=Plasmopara halst... [more]
A0A8J5IBD6_9STRA4.590e-3349.19Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A7S1G1I4_9STRA7.400e-3348.76Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
H3GE06_PHYRM8.120e-3349.19Rab-GAP TBC domain-containing protein n=6 Tax=Phyt... [more]
D0MU62_PHYIT1.430e-3248.39Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14286contigL-elsbetiae_contig14286:3054..4057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.0
Seed ortholog evalue6.1e-61
Seed eggNOG ortholog2880.D7G5V3
KEGG koko:K19944,ko:K20133
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.6529663-CDS-L-elsbetiae_contig14286:3053..32811622815570.6529663-CDS-L-elsbetiae_contig14286:3053..3281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14286 3054..3281 -
1691682965.9646707-CDS-L-elsbetiae_contig14286:3053..32811691682965.9646707-CDS-L-elsbetiae_contig14286:3053..3281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14286 3054..3281 -
1622815570.676062-CDS-L-elsbetiae_contig14286:3910..40571622815570.676062-CDS-L-elsbetiae_contig14286:3910..4057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14286 3911..4057 -
1691682965.9770813-CDS-L-elsbetiae_contig14286:3910..40571691682965.9770813-CDS-L-elsbetiae_contig14286:3910..4057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14286 3911..4057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14286.3179.1prot_L-elsbetiae_contig14286.3179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14286 3054..4057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14286.3179.1

>prot_L-elsbetiae_contig14286.3179.1 ID=prot_L-elsbetiae_contig14286.3179.1|Name=mRNA_L-elsbetiae_contig14286.3179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
QVQYCQGINYICSLFLLYMPEENAFWMLVASMTRSCAPLRELFLPGMMKA
QEFQFVMDSLTMKHCKKLSNQILANNLTPSMYATQWFLTAFTQRFPYDLV
TRVWDMFLLEDWKVFYRVCLALFK*
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mRNA from alignment at L-elsbetiae_contig14286:3054..4057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14286.3179.1 ID=mRNA_L-elsbetiae_contig14286.3179.1|Name=mRNA_L-elsbetiae_contig14286.3179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1004bp|location=Sequence derived from alignment at L-elsbetiae_contig14286:3054..4057- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCAATATTGCCAGGGCATAAATTACATTTGCTCTTTGTTCCTGCT CTACATGCCGGAGGAAAACGCTTTTTGGATGCTGGTCGCTAGCATGACAC GTTCCTGCGCACCGTTGAGAGAGCTATTCCTTCCGGGAATGATGAAGGTA TTGTAACGCAACAGCACGGTGTGCCACGCACAGAGGAATATGCATTCAGA CTCACCCGACGTGCACGTGGTTGGGTCGACCGTCAAAAACTCGTCGCGTG TACTCAGATCGTATTTTGCAGCGTGTCCCAACCAGCTTACCGTGCACATG ACGGCCGGTGCACCCTACTGCAATCCTGGCCTCACAGGGCTCATCATCGG TCACGTCTGGTGTTGCTGCACTATTTCTTGGGTGTTGAACTTTCGTAGAA GCCCTAAAACACGCGCAGGCCCAGCTTGGCCACTCGTGGTCAACATACCC ACACACTTCGAGCCTGTTCAGGCCAAATCGCTAGATCATAGGTCTATGGA TTGCGCGCTCTGAGGTCGTGGACATTGCAGAAATCCCTCCTGCCGTATCT GGATCATTTTCTCGTTTTGCCCCTTATGCTTCTGCGTAGTCAGCCTGTGC ATTTAACTGTGAAAACTCGTAAGTACCAAGATCTGTTTGACTTCTGCTGA CACGTGGCACGCAAGTGTGCCTCGCGCATAAAAAAATTGATTAGTTCGTG CTTTGTGCCAAGCACACCTGGTGCACCACGTGTGGTGCGTGATGTTGACG GATTTCTCTTTGTATACCTTGACCAGGCCCAGGAATTCCAGTTCGTGATG GACTCGCTGACGATGAAGCACTGCAAGAAGCTGTCGAATCAGATCCTGGC AAATAACCTCACGCCTTCCATGTACGCAACCCAGTGGTTCCTTACTGCGT TCACCCAGCGTTTCCCGTACGACTTAGTGACTCGAGTGTGGGATATGTTC CTACTGGAGGACTGGAAGGTGTTCTACCGCGTGTGTCTGGCGCTTTTCAA GTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14286:3054..4057-

>mRNA_L-elsbetiae_contig14286.3179.1 ID=mRNA_L-elsbetiae_contig14286.3179.1|Name=mRNA_L-elsbetiae_contig14286.3179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig14286:3054..4057- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGCAATATTGCCAGGGCATAAATTACATTTGCTCTTTGTTCCTGCT
CTACATGCCGGAGGAAAACGCTTTTTGGATGCTGGTCGCTAGCATGACAC
GTTCCTGCGCACCGTTGAGAGAGCTATTCCTTCCGGGAATGATGAAGCAG
GTGCAATATTGCCAGGGCATAAATTACATTTGCTCTTTGTTCCTGCTCTA
CATGCCGGAGGAAAACGCTTTTTGGATGCTGGTCGCTAGCATGACACGTT
CCTGCGCACCGTTGAGAGAGCTATTCCTTCCGGGAATGATGAAGGCCCAG
GAATTCCAGTTCGTGATGGACTCGCTGACGATGAAGCACTGCAAGAAGCT
GTCGAATCAGATCCTGGCAAATAACCTCACGCCTTCCATGTACGCAACCC
AGTGGTTCCTTACTGCGTTCACCCAGCGTTTCCCGTACGACTTAGTGACT
CGAGTGTGGGATATGTTCCTACTGGAGGACTGGAAGGTGTTCTACCGCGT
GTGTCTGGCGCTTTTCAAGTGAGCCCAGGAATTCCAGTTCGTGATGGACT
CGCTGACGATGAAGCACTGCAAGAAGCTGTCGAATCAGATCCTGGCAAAT
AACCTCACGCCTTCCATGTACGCAACCCAGTGGTTCCTTACTGCGTTCAC
CCAGCGTTTCCCGTACGACTTAGTGACTCGAGTGTGGGATATGTTCCTAC
TGGAGGACTGGAAGGTGTTCTACCGCGTGTGTCTGGCGCTTTTCAAGTGA
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