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Homology
BLAST of mRNA_L-elsbetiae_contig14283.3178.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 1.540e-7 Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 1
Query: 7 MVDVASKRCAHPGCSKRPIYGVEGSKAREFCADH 108
MVDV SKRC HPGC+KRP YG +GSK E CA H
Sbjct: 1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQH 34
BLAST of mRNA_L-elsbetiae_contig14283.3178.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 2.650e-7 Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 7 MVDVASKRCAHPGCSKRPIYGVEGSKAREFCADH 108
MVDV ++RC HPGC+KRP +G +GSK +EFCA H
Sbjct: 1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQH 34
BLAST of mRNA_L-elsbetiae_contig14283.3178.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 1.900e-6 Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1
Query: 7 MVDVASKRCAHPGCSKRPIYGVEGSKAREFCADHKKE 117
M+DV KRC H GC KRP YG +GSK REFCA H ++
Sbjct: 1 MIDVVCKRCGHLGCMKRPSYGTDGSKKREFCAQHSQQ 37
BLAST of mRNA_L-elsbetiae_contig14283.3178.1 vs. uniprot
Match: D7FSL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL7_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 3.490e-6 Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 7 MVDVASKRCAHPGCSKRPIYGVEGSKAREFCADHKKE 117
M++V SKRC HPGC+KRP +G GSK EFC+ H K+
Sbjct: 1 MINVYSKRCGHPGCTKRPSFGTTGSKRPEFCSQHAKQ 37
BLAST of mRNA_L-elsbetiae_contig14283.3178.1 vs. uniprot
Match: A0A6H5KTQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ3_9PHAE) HSP 1 Score: 57.0 bits (136), Expect = 1.550e-5 Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 4 GMVDVASKRCAHPGCSKRPIYGVEGSKAREFCADHKKE 117
GMVDV SKRC +PGC+K I+G+ GSK REFC H ++
Sbjct: 171 GMVDVVSKRCGYPGCTKFAIFGMIGSKNREFCTSHAED 208
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.2 |
| Seed ortholog evalue | 2.4e-07 |
| Seed eggNOG ortholog | 2880.D7G985 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 29ZCP@1,2RXW0@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 896 |
| Cds size | 873 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815570.57776-UTR-L-elsbetiae_contig14283:1688..1705 | 1622815570.57776-UTR-L-elsbetiae_contig14283:1688..1705 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14283 1689..1705 - |
| 1691682965.9199212-UTR-L-elsbetiae_contig14283:1688..1705 | 1691682965.9199212-UTR-L-elsbetiae_contig14283:1688..1705 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14283 1689..1705 - |
| 1622815570.6132224-UTR-L-elsbetiae_contig14283:3179..3185 | 1622815570.6132224-UTR-L-elsbetiae_contig14283:3179..3185 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14283 3180..3185 - |
| 1691682965.9491699-UTR-L-elsbetiae_contig14283:3179..3185 | 1691682965.9491699-UTR-L-elsbetiae_contig14283:3179..3185 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14283 3180..3185 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815570.587848-CDS-L-elsbetiae_contig14283:1705..1766 | 1622815570.587848-CDS-L-elsbetiae_contig14283:1705..1766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14283 1706..1766 - |
| 1691682965.932739-CDS-L-elsbetiae_contig14283:1705..1766 | 1691682965.932739-CDS-L-elsbetiae_contig14283:1705..1766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14283 1706..1766 - |
| 1622815570.6001081-CDS-L-elsbetiae_contig14283:2367..3179 | 1622815570.6001081-CDS-L-elsbetiae_contig14283:2367..3179 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14283 2368..3179 - |
| 1691682965.941123-CDS-L-elsbetiae_contig14283:2367..3179 | 1691682965.941123-CDS-L-elsbetiae_contig14283:2367..3179 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14283 2368..3179 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14283.3178.1 >prot_L-elsbetiae_contig14283.3178.1 ID=prot_L-elsbetiae_contig14283.3178.1|Name=mRNA_L-elsbetiae_contig14283.3178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp
MVDVASKRCAHPGCSKRPIYGVEGSKAREFCADHKKEGMVDVASKRCAHP
GCSKQPIYGVEDSKAREFCADHKKEGMVDVASKRCAHPGCSKQPNFGVEG
SKAREFCADHKKEGMVNVSSKRCAHPGCSKRPNFGVEGSKTRQFCAQHKK
EGMVNVVSKRCAHRGCSKHPTYGVQGSKAREFCADHKMEDMVNPRSARPL
GGGTGSDEGVGSAASFAGVRVGEERECKERVPPTAAGGTSSASDRANTPA
SVKVEEGVVMSALSGTAGAVRRTTGGHKKRRRTEAAPNHP* back to topmRNA from alignment at L-elsbetiae_contig14283:1689..3185- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig14283.3178.1 ID=mRNA_L-elsbetiae_contig14283.3178.1|Name=mRNA_L-elsbetiae_contig14283.3178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1497bp|location=Sequence derived from alignment at L-elsbetiae_contig14283:1689..3185- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGCATGGTGGATGTTGCCAGCAAGAGGTGTGCCCATCCTGGTTGCAG
CAAGCGCCCGATTTACGGCGTGGAGGGCAGCAAGGCTCGGGAGTTCTGCG
CTGATCACAAGAAGGAGGGCATGGTGGATGTTGCCAGCAAGAGGTGTGCC
CATCCCGGTTGCAGCAAGCAGCCGATTTACGGCGTGGAGGACAGCAAGGC
TCGGGAGTTCTGCGCTGATCACAAGAAGGAGGGCATGGTGGATGTTGCCA
GCAAGAGGTGTGCCCATCCCGGTTGCAGCAAGCAGCCGAATTTCGGCGTG
GAGGGCAGCAAGGCTCGGGAGTTCTGCGCTGATCACAAGAAAGAGGGCAT
GGTTAATGTCAGCAGCAAGAGGTGTGCCCATCCCGGTTGCAGCAAGCGCC
CGAATTTCGGCGTGGAGGGCAGCAAGACTCGGCAGTTCTGCGCTCAACAC
AAGAAGGAGGGCATGGTGAACGTCGTCAGCAAGAGGTGTGCCCATCGTGG
TTGCAGCAAGCACCCGACTTACGGCGTACAGGGCAGCAAGGCTCGGGAGT
TCTGCGCTGATCACAAGATGGAGGACATGGTGAACCCACGCTCAGCCCGT
CCTTTGGGGGGGGGCACCGGCAGTGACGAAGGCGTAGGTTCAGCTGCAAG
TTTCGCCGGGGTTCGTGTTGGAGAGGAACGAGAGTGCAAGGAACGAGTTC
CTCCGACAGCAGCAGGAGGGACCTCCTCGGCGAGCGATCGAGCCAACACC
CCTGCTTCGGTGAAGGTGGAAGAGGGCGTGGTCATGTCCGCCCTGTCGGG
CACTGCAGGAGCTGTGAGGTATGTACGTGGAACGTGCCTGGCACGGTTGG
GGCGGTCGCACAGGGAATAAGTACGCTTTGGCCATTTGGATGTTGTTGCA
ATTCGCTCTCTCTCCTCCGCATATATAGATGCGGATTTAGGATCCGGCGA
CACGGCGTTGGTGTTAGTTAGGCGACCTCGCTCGCCACCGTAAGCAAGCG
TGTGCTCTCCTGTGTATGTGCTGCTGATGCAAGACATGTCAGTATGTAGC
AGTTCTGCGGACCCACAGGTAATGCTGGGGTGCTGTGTATCCATCGGGCG
TGTCGCTGGCATGTGGTGTTGGATTAACCATATATCGTATATTGTTTTGG
GACCAAGCTACGAAGAAATCTGCTGCACGATAGTTGGACTACGACAGCGT
CAAGGCTGGGCGGTTGTGCGGTTTCTCATTGCCCATATCTCGTGGAAAGG
CCTTCCAATACCAGGGTTGCTCTCTTGTCTTTGGTTCCTGCTTCCATGTC
GCTAGTGTTTGTAGCAACTGCCTGGTTTGTCAGAACTGCAGCAGCGACGA
GAACCGGCTTGTCTCCATACTTTTGTTTTGTTCATCCTCTATCCCGTGCT
CCTTTTTTTGCTCGGCCAGACGAACCACCGGCGGACACAAGAAGCGACGC
CGGACAGAAGCAGCGCCGAACCACCCTTAGCATGTGTTTATGCTTGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig14283:1689..3185- >mRNA_L-elsbetiae_contig14283.3178.1 ID=mRNA_L-elsbetiae_contig14283.3178.1|Name=mRNA_L-elsbetiae_contig14283.3178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig14283:1689..3185- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGATGTTGCCAGCAAGAGGTGTGCCCATCCTGGTTGCAGCAAGCG
CCCGATTTACGGCGTGGAGGGCAGCAAGGCTCGGGAGTTCTGCGCTGATC
ACAAGAAGGAGGGCATGGTGGATGTTGCCAGCAAGAGGTGTGCCCATCCC
GGTTGCAGCAAGCAGCCGATTTACGGCGTGGAGGACAGCAAGGCTCGGGA
GTTCTGCGCTGATCACAAGAAGGAGGGCATGGTGGATGTTGCCAGCAAGA
GGTGTGCCCATCCCGGTTGCAGCAAGCAGCCGAATTTCGGCGTGGAGGGC
AGCAAGGCTCGGGAGTTCTGCGCTGATCACAAGAAAGAGGGCATGGTTAA
TGTCAGCAGCAAGAGGTGTGCCCATCCCGGTTGCAGCAAGCGCCCGAATT
TCGGCGTGGAGGGCAGCAAGACTCGGCAGTTCTGCGCTCAACACAAGAAG
GAGGGCATGGTGAACGTCGTCAGCAAGAGGTGTGCCCATCGTGGTTGCAG
CAAGCACCCGACTTACGGCGTACAGGGCAGCAAGGCTCGGGAGTTCTGCG
CTGATCACAAGATGGAGGACATGGTGAACCCACGCTCAGCCCGTCCTTTG
GGGGGGGGCACCGGCAGTGACGAAGGCGTAGGTTCAGCTGCAAGTTTCGC
CGGGGTTCGTGTTGGAGAGGAACGAGAGTGCAAGGAACGAGTTCCTCCGA
CAGCAGCAGGAGGGACCTCCTCGGCGAGCGATCGAGCCAACACCCCTGCT
TCGGTGAAGGTGGAAGAGGGCGTGGTCATGTCCGCCCTGTCGGGCACTGC
AGGAGCTGTGAGATGGTGGATGTTGCCAGCAAGAGGTGTGCCCATCCTGG
TTGCAGCAAGCGCCCGATTTACGGCGTGGAGGGCAGCAAGGCTCGGGAGT
TCTGCGCTGATCACAAGAAGGAGGGCATGGTGGATGTTGCCAGCAAGAGG
TGTGCCCATCCCGGTTGCAGCAAGCAGCCGATTTACGGCGTGGAGGACAG
CAAGGCTCGGGAGTTCTGCGCTGATCACAAGAAGGAGGGCATGGTGGATG
TTGCCAGCAAGAGGTGTGCCCATCCCGGTTGCAGCAAGCAGCCGAATTTC
GGCGTGGAGGGCAGCAAGGCTCGGGAGTTCTGCGCTGATCACAAGAAAGA
GGGCATGGTTAATGTCAGCAGCAAGAGGTGTGCCCATCCCGGTTGCAGCA
AGCGCCCGAATTTCGGCGTGGAGGGCAGCAAGACTCGGCAGTTCTGCGCT
CAACACAAGAAGGAGGGCATGGTGAACGTCGTCAGCAAGAGGTGTGCCCA
TCGTGGTTGCAGCAAGCACCCGACTTACGGCGTACAGGGCAGCAAGGCTC
GGGAGTTCTGCGCTGATCACAAGATGGAGGACATGGTGAACCCACGCTCA
GCCCGTCCTTTGGGGGGGGGCACCGGCAGTGACGAAGGCGTAGGTTCAGC
TGCAAGTTTCGCCGGGGTTCGTGTTGGAGAGGAACGAGAGTGCAAGGAAC
GAGTTCCTCCGACAGCAGCAGGAGGGACCTCCTCGGCGAGCGATCGAGCC
AACACCCCTGCTTCGGTGAAGGTGGAAGAGGGCGTGGTCATGTCCGCCCT
GTCGGGCACTGCAGGAGCTGTGAGACGAACCACCGGCGGACACAAGAAGC
GACGCCGGACAGAAGCAGCGCCGAACCACCCTTAGACGAACCACCGGCGG
ACACAAGAAGCGACGCCGGACAGAAGCAGCGCCGAACCACCCTTAG back to top
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