mRNA_L-elsbetiae_contig1428.3175.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1428.3175.1
Unique NamemRNA_L-elsbetiae_contig1428.3175.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1428.3175.1 vs. uniprot
Match: D8LF84_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF84_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.620e-26
Identity = 74/113 (65.49%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:   13 DTLDEVSFVNPHAAQARSRRRVKLTAARARLAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRRRVDRQEAGG 351
            D LDEV FVNP A +ARSRRRVKLTAARARLAALA                             QRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLR+R+DR+E  G
Sbjct:    6 DALDEVHFVNPDAVRARSRRRVKLTAARARLAALAASGGGASSLGEEGAGPGVSEKEVRKQ---QRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRKEDDG 115
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BLAST of mRNA_L-elsbetiae_contig1428.3175.1 vs. uniprot
Match: A0A6H5K1A6_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.060e-18
Identity = 81/111 (72.97%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:   19 LDEVSFVNPHAAQARSRRRVKLTAARARLAALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRRRVDRQEAGG 351
            LDEV FVNP A  ARSRRRVKL A         XXXXXXXXXXXXXXXXX            QRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLR+R+DRQE  G
Sbjct:    8 LDEVHFVNPDAVGARSRRRVKLAAX---XXXXXXXXXXXXXXXXXXXXXXGPGVSEKEVRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQEENRRLRQRIDRQEDDG 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1428.3175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF84_ECTSI1.620e-2665.49BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K1A6_9PHAE1.060e-1872.97BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1428contigL-elsbetiae_contig1428:14845..15639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-01_004000.1
Exons1
Model size795
Cds size795
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.388657-CDS-L-elsbetiae_contig1428:14844..156391622815570.388657-CDS-L-elsbetiae_contig1428:14844..15639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1428 14845..15639 +
1691682965.8344705-CDS-L-elsbetiae_contig1428:14844..156391691682965.8344705-CDS-L-elsbetiae_contig1428:14844..15639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1428 14845..15639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1428.3175.1prot_L-elsbetiae_contig1428.3175.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1428 14845..15639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1428.3175.1

>prot_L-elsbetiae_contig1428.3175.1 ID=prot_L-elsbetiae_contig1428.3175.1|Name=mRNA_L-elsbetiae_contig1428.3175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MRDRDTLDEVSFVNPHAAQARSRRRVKLTAARARLAALAAAGGGVFSAGG
GAGGGGSAAMSEKELRKQQRMLRNRESAALSRKRKSDRIGELEIQVEALQ
EENRRLRRRVDRQEAGGGGGGNGDGNSNGNSNASGATGSTRSAAPRAAWA
PSNNRAAMAALSATSVVVPAAPSTTAIVPATTTPPTNCDDTAAAAAAAAG
RHNGHAGNNNHLFRLDANAASSPSPSSGRCSAAASSALPSSCSSSSTSFA
KACFNIISRPAVFA*
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mRNA from alignment at L-elsbetiae_contig1428:14845..15639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1428.3175.1 ID=mRNA_L-elsbetiae_contig1428.3175.1|Name=mRNA_L-elsbetiae_contig1428.3175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=795bp|location=Sequence derived from alignment at L-elsbetiae_contig1428:14845..15639+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGACAGGGACACCCTCGACGAGGTGTCCTTCGTCAACCCCCACGC
GGCCCAGGCGCGCTCCCGCCGCCGCGTCAAGCTCACCGCCGCCCGCGCCC
GGTTGGCGGCCCTGGCCGCCGCCGGGGGGGGCGTTTTTTCCGCCGGGGGC
GGCGCCGGCGGCGGCGGCAGTGCCGCCATGAGCGAGAAGGAGCTGCGTAA
GCAGCAGCGGATGCTGAGAAACCGCGAGTCAGCCGCCCTCTCGAGAAAGC
GCAAGAGCGACCGCATCGGGGAGCTCGAGATCCAGGTGGAGGCTCTCCAG
GAGGAGAACCGCCGCCTCCGCCGGCGCGTCGACCGCCAGGAAGCCGGCGG
CGGCGGCGGCGGCAACGGCGACGGCAACAGCAACGGCAACAGCAACGCCA
GCGGGGCTACGGGCTCGACTCGCTCGGCTGCCCCCCGCGCGGCGTGGGCT
CCTTCCAACAACCGCGCCGCAATGGCGGCGTTGTCTGCCACTTCCGTGGT
CGTCCCCGCCGCGCCTTCTACCACCGCCATCGTCCCCGCCACTACGACTC
CGCCCACCAACTGCGACGACACCGCCGCCGCCGCCGCCGCCGCCGCCGGC
CGCCACAACGGCCACGCCGGCAACAACAACCACCTCTTCCGCCTCGACGC
CAACGCCGCTTCTTCTCCCTCGCCGTCCTCGGGCCGCTGCTCGGCCGCGG
CTTCGTCTGCCCTGCCGTCTTCTTGTTCTTCTTCTTCGACTTCTTTTGCA
AAAGCTTGCTTTAATATCATCTCGCGACCCGCAGTGTTTGCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1428:14845..15639+

>mRNA_L-elsbetiae_contig1428.3175.1 ID=mRNA_L-elsbetiae_contig1428.3175.1|Name=mRNA_L-elsbetiae_contig1428.3175.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig1428:14845..15639+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGACAGGGACACCCTCGACGAGGTGTCCTTCGTCAACCCCCACGC
GGCCCAGGCGCGCTCCCGCCGCCGCGTCAAGCTCACCGCCGCCCGCGCCC
GGTTGGCGGCCCTGGCCGCCGCCGGGGGGGGCGTTTTTTCCGCCGGGGGC
GGCGCCGGCGGCGGCGGCAGTGCCGCCATGAGCGAGAAGGAGCTGCGTAA
GCAGCAGCGGATGCTGAGAAACCGCGAGTCAGCCGCCCTCTCGAGAAAGC
GCAAGAGCGACCGCATCGGGGAGCTCGAGATCCAGGTGGAGGCTCTCCAG
GAGGAGAACCGCCGCCTCCGCCGGCGCGTCGACCGCCAGGAAGCCGGCGG
CGGCGGCGGCGGCAACGGCGACGGCAACAGCAACGGCAACAGCAACGCCA
GCGGGGCTACGGGCTCGACTCGCTCGGCTGCCCCCCGCGCGGCGTGGGCT
CCTTCCAACAACCGCGCCGCAATGGCGGCGTTGTCTGCCACTTCCGTGGT
CGTCCCCGCCGCGCCTTCTACCACCGCCATCGTCCCCGCCACTACGACTC
CGCCCACCAACTGCGACGACACCGCCGCCGCCGCCGCCGCCGCCGCCGGC
CGCCACAACGGCCACGCCGGCAACAACAACCACCTCTTCCGCCTCGACGC
CAACGCCGCTTCTTCTCCCTCGCCGTCCTCGGGCCGCTGCTCGGCCGCGG
CTTCGTCTGCCCTGCCGTCTTCTTGTTCTTCTTCTTCGACTTCTTTTGCA
AAAGCTTGCTTTAATATCATCTCGCGACCCGCAGTGTTTGCGTAAATGCG
GGACAGGGACACCCTCGACGAGGTGTCCTTCGTCAACCCCCACGCGGCCC
AGGCGCGCTCCCGCCGCCGCGTCAAGCTCACCGCCGCCCGCGCCCGGTTG
GCGGCCCTGGCCGCCGCCGGGGGGGGCGTTTTTTCCGCCGGGGGCGGCGC
CGGCGGCGGCGGCAGTGCCGCCATGAGCGAGAAGGAGCTGCGTAAGCAGC
AGCGGATGCTGAGAAACCGCGAGTCAGCCGCCCTCTCGAGAAAGCGCAAG
AGCGACCGCATCGGGGAGCTCGAGATCCAGGTGGAGGCTCTCCAGGAGGA
GAACCGCCGCCTCCGCCGGCGCGTCGACCGCCAGGAAGCCGGCGGCGGCG
GCGGCGGCAACGGCGACGGCAACAGCAACGGCAACAGCAACGCCAGCGGG
GCTACGGGCTCGACTCGCTCGGCTGCCCCCCGCGCGGCGTGGGCTCCTTC
CAACAACCGCGCCGCAATGGCGGCGTTGTCTGCCACTTCCGTGGTCGTCC
CCGCCGCGCCTTCTACCACCGCCATCGTCCCCGCCACTACGACTCCGCCC
ACCAACTGCGACGACACCGCCGCCGCCGCCGCCGCCGCCGCCGGCCGCCA
CAACGGCCACGCCGGCAACAACAACCACCTCTTCCGCCTCGACGCCAACG
CCGCTTCTTCTCCCTCGCCGTCCTCGGGCCGCTGCTCGGCCGCGGCTTCG
TCTGCCCTGCCGTCTTCTTGTTCTTCTTCTTCGACTTCTTTTGCAAAAGC
TTGCTTTAATATCATCTCGCGACCCGCAGTGTTTGCGTAA
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