mRNA_L-elsbetiae_contig14278.3174.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14278.3174.1
Unique NamemRNA_L-elsbetiae_contig14278.3174.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: D7FX19_ECTSI (Er lumen protein retaining receptor 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX19_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.450e-64
Identity = 105/120 (87.50%), Postives = 111/120 (92.50%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAVV 372
            T+AS TRGF FAVLLGLML KKHARGVSMKSLQLY VVFASRLVSVLQHEGYLPYD+SGDFVYH AEI SLALA GCVVL+STK KSTYQ++VDSFGALHVPTE GTLYIFVPCLLLA+V
Sbjct:   53 TFASFTRGFGFAVLLGLMLAKKHARGVSMKSLQLYAVVFASRLVSVLQHEGYLPYDRSGDFVYHGAEIASLALAVGCVVLISTKFKSTYQQDVDSFGALHVPTEWGTLYIFVPCLLLAIV 172          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A836CR66_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR66_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.160e-42
Identity = 70/119 (58.82%), Postives = 97/119 (81.51%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAV 369
            TYA+LTR F FA+LL  M  K+HA+GVS K+L++Y +VF  RLVS+L+HEGYLPYDKSGDF+YHAAE+ S+ALA  C+  M T+ + +YQ++ D+FG++ +P+ LGTLY+ VPC++LAV
Sbjct:   54 TYAALTRTFGFALLLVRMFIKQHAKGVSRKTLEMYVLVFFPRLVSILRHEGYLPYDKSGDFIYHAAEMLSMALAAACLFYMHTRFERSYQRDYDTFGSVGLPSHLGTLYMIVPCVVLAV 172          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A835ZJ22_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ22_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.820e-38
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAV 369
            TYA+L R F FA+LL  M  KKHA+GVS K+L+LY  VF  RLVS+ +HEGYLPYDKSGDF+YHAAE  SL  A  C+V M T    +YQ++ D+FG +++P   GTLY+ VPC+++AV
Sbjct:   54 TYAALARTFGFALLLVRMFIKKHAKGVSRKTLELYVFVFLPRLVSIFRHEGYLPYDKSGDFIYHAAEGLSLVGALLCLVFMHTSFARSYQRDYDTFGNIYIPARFGTLYMIVPCVVMAV 172          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A7S2SS64_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS64_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.640e-30
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAV 369
            TY++L R FAF +L   ML    A  VS+K+L+ Y VVF  RL S+L+HEGYLPYD+SGD+ YH  E  SLAL  G + L+  + ++TY +  D+FG+LH+P + G +YI VP ++LA+
Sbjct:   61 TYSALWRCFAFFLLNFRMLTSNSASSVSLKTLEAYVVVFVFRLASLLRHEGYLPYDRSGDWFYHLVETTSLALVCGAIFLLYFRFRATYDEAKDAFGSLHIPPQYGVVYIIVPAMILAI 179          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A6V2QBA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QBA8_HETAK)

HSP 1 Score: 118 bits (296), Expect = 3.340e-30
Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAVV 372
            TYAS+TR FAFAVL   M+  K ++GVS+K+L+LY +++  RL ++ +HEGYLP+D+SGD+ YH  E  +L L G    L+     + Y+K  D FG LHVP E G +Y+ VPC LLA+V
Sbjct:   45 TYASMTRFFAFAVLAFKMIWTKSSQGVSLKTLELYFLMYLFRLAAIARHEGYLPFDRSGDWFYHMVEFLALVLVGLSGFLIMGPFAARYEKTFDCFGNLHVPPEYGAVYLIVPCFLLALV 164          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A662WRX5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRX5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.030e-29
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAVV 372
            T  S  R F FA L+     ++   G+S+K+L+LY  VF  RL S+L+++GYLPYD+SGD++Y   EI +L L  G + L++ +  STY+   D+FG LH+PTELG LYI +PC+L+ +V
Sbjct:   55 TMGSFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYSFLEITALVLCCGVIYLVTMRFNSTYELRYDTFGWLHLPTELGGLYILLPCILVGMV 174          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A2D4CHY0_PYTIN (Uncharacterized protein (Fragment) n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CHY0_PYTIN)

HSP 1 Score: 114 bits (286), Expect = 3.140e-29
Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAVV 372
            T+ S  R F F VL+     +K   G+S+K+L+LY  VF  RL S+L+++GYLPYD+SGD++Y   EI + A+    + L+  +  STY+   D+FG LHVPTELG LYI VPC+L+ ++
Sbjct:   49 TFGSFVRAFGFGVLIFKAFSQKSVSGLSLKTLELYAFVFFFRLSSILRYQGYLPYDRSGDWLYSFLEISAFAMCCVVIYLVVGRFNSTYELRYDTFGWLHVPTELGALYILVPCILIGMI 168          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: W2L558_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2L558_PHYPR)

HSP 1 Score: 112 bits (281), Expect = 9.800e-29
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCL 357
            T  +  R F FA L+     ++   G+S+K+L+LY  VF  RL S+L+++GYLPYD+SGD++Y   EI +L L  G + L++ +  STY+   D+FG LHVPTELG LYI +PC+
Sbjct:   50 TMGAFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFFFRLSSILRYQGYLPYDRSGDWLYSFLEIVALTLCCGVIYLVTMRFNSTYELRYDTFGWLHVPTELGALYILLPCM 164          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A662Y115_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y115_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.030e-28
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 1
Query:   22 SLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLLAVV 372
            S  R F FA L+     ++   G+S+K+L+LY  VF  RL S+L+++GYLPYD+SGD++Y   EI +L L  G + L++ +  STY+   D+FG LH+PTELG LYI +PC+L+ +V
Sbjct:    3 SFVRAFGFAFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYSFLEIIALVLCCGVIYLVTMRFNSTYELRYDTFGWLHLPTELGGLYILLPCILVGMV 119          
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Match: A0A0P1AB52_PLAHL (Er lumen protein retaining receptor n=18 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AB52_PLAHL)

HSP 1 Score: 114 bits (286), Expect = 1.110e-28
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   13 TYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSVLQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSFGALHVPTELGTLYIFVPCLLL 363
            T  S  R F F  L+     ++   G+S+K+L+LY  VF  RL S+L+++GYLPYD+SGD++Y   EI +L L  G + L++T+  S+Y+   D+FG LHVPTELG LYI +PC+L+
Sbjct:   50 TMGSFVRAFGFVFLIFKAFSQRSVAGLSLKTLELYAFVFLFRLSSILRYQGYLPYDRSGDWLYSFLEIMALMLCCGVIYLVTTRFNSSYELRYDTFGWLHVPTELGALYILLPCILI 166          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14278.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX19_ECTSI1.450e-6487.50Er lumen protein retaining receptor 1 n=2 Tax=Ecto... [more]
A0A836CR66_9STRA1.160e-4258.82Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A835ZJ22_9STRA1.820e-3857.14Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A7S2SS64_9STRA1.640e-3048.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V2QBA8_HETAK3.340e-3049.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A662WRX5_9STRA1.030e-2945.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A2D4CHY0_PYTIN3.140e-2945.83Uncharacterized protein (Fragment) n=2 Tax=Pythium... [more]
W2L558_PHYPR9.800e-2946.09Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A662Y115_9STRA1.030e-2846.15Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0P1AB52_PLAHL1.110e-2846.15Er lumen protein retaining receptor n=18 Tax=Peron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14278contigL-elsbetiae_contig14278:1613..2475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue1.5e-51
Seed eggNOG ortholog2880.D7FX19
KEGG koko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.ER retention sequence binding
EggNOG OGsCOG5196@1,KOG3106@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Ec32 ortholog descriptioner lumen protein retaining receptor 1
Ec32 orthologEc-10_003970.1
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.3428319-CDS-L-elsbetiae_contig14278:1612..17961622815570.3428319-CDS-L-elsbetiae_contig14278:1612..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14278 1613..1796 -
1691682965.812049-CDS-L-elsbetiae_contig14278:1612..17961691682965.812049-CDS-L-elsbetiae_contig14278:1612..1796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14278 1613..1796 -
1622815570.354396-CDS-L-elsbetiae_contig14278:2287..24751622815570.354396-CDS-L-elsbetiae_contig14278:2287..2475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14278 2288..2475 -
1691682965.8239076-CDS-L-elsbetiae_contig14278:2287..24751691682965.8239076-CDS-L-elsbetiae_contig14278:2287..2475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14278 2288..2475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14278.3174.1prot_L-elsbetiae_contig14278.3174.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14278 1613..2475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14278.3174.1

>prot_L-elsbetiae_contig14278.3174.1 ID=prot_L-elsbetiae_contig14278.3174.1|Name=mRNA_L-elsbetiae_contig14278.3174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
PRRQTYASLTRGFAFAVLLGLMLDKKHARGVSMKSLQLYTVVFASRLVSV
LQHEGYLPYDKSGDFVYHAAEICSLALAGGCVVLMSTKLKSTYQKEVDSF
GALHVPTELGTLYIFVPCLLLAVV
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mRNA from alignment at L-elsbetiae_contig14278:1613..2475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14278.3174.1 ID=mRNA_L-elsbetiae_contig14278.3174.1|Name=mRNA_L-elsbetiae_contig14278.3174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=863bp|location=Sequence derived from alignment at L-elsbetiae_contig14278:1613..2475- (Laminarionema elsbetiae ELsaHSoW15)
CCGCGACGCCAGACCTATGCCTCCTTGACTCGGGGCTTCGCGTTCGCCGT GCTGCTGGGGCTGATGCTCGACAAGAAGCACGCCAGAGGTGTTTCTATGA AGAGCCTGCAGCTCTACACGGTCGTCTTCGCGTCGCGGTTGGTGTCCGTG CTGCAGCACGAGGGGTACCTCCCCTACGACAAGAGCGGGTGAGAACCTGC GCGGCCAGAACCTTTCTTCGTCTTGGTTACAGTATATACACATCTATCTG TATGCATAATTGTGCATGTGTTAACAGACAAAAAACGCCAGCGACCAAAC CGCAAAGACGCCTAACCTAGGATACACTTCTGCCATATGTATGTATGTAT GCACACACCCCGGCGGATAAAAAAAATACTGGCTCCCGTGCCCCCCTCAT CCACTCCCCGCTTGGTTCCATCCCGGATTTCTTCCTAGGAGCGTTGCGGC TACATACGCCACGCGCGATGCAATGAGGGTACAATATACCGGCCTCCGAC GACTTCCTTGTAACCATGGCGGCGGCGGCACGCGGTCTCGCCTGGCATAG TTACAATATAGTTTTCCAGGATAATTTATCCCTTTCCCTTCTCCGTCCCG CACAACCAACCCCCCCCCCCCCACCGTGCGGCCCCCCCGCCGCGCACCCC TTCCTCCTCGTCGTGTTTTTTTTTGTCAGTGACTTTGTCTACCACGCGGC GGAGATATGCTCGCTCGCCCTGGCGGGGGGCTGCGTGGTGCTCATGTCGA CCAAGCTCAAGTCGACGTACCAGAAGGAAGTGGACTCGTTCGGCGCGCTG CACGTGCCGACGGAGTTGGGCACGCTGTACATCTTCGTCCCTTGCCTGTT GCTGGCTGTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14278:1613..2475-

>mRNA_L-elsbetiae_contig14278.3174.1 ID=mRNA_L-elsbetiae_contig14278.3174.1|Name=mRNA_L-elsbetiae_contig14278.3174.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig14278:1613..2475- (Laminarionema elsbetiae ELsaHSoW15)
CCGCGACGCCAGACCTATGCCTCCTTGACTCGGGGCTTCGCGTTCGCCGT
GCTGCTGGGGCTGATGCTCGACAAGAAGCACGCCAGAGGTGTTTCTATGA
AGAGCCTGCAGCTCTACACGGTCGTCTTCGCGTCGCGGTTGGTGTCCGTG
CTGCAGCACGAGGGGTACCTCCCCTACGACAAGAGCGGCCGCGACGCCAG
ACCTATGCCTCCTTGACTCGGGGCTTCGCGTTCGCCGTGCTGCTGGGGCT
GATGCTCGACAAGAAGCACGCCAGAGGTGTTTCTATGAAGAGCCTGCAGC
TCTACACGGTCGTCTTCGCGTCGCGGTTGGTGTCCGTGCTGCAGCACGAG
GGGTACCTCCCCTACGACAAGAGCGGTGACTTTGTCTACCACGCGGCGGA
GATATGCTCGCTCGCCCTGGCGGGGGGCTGCGTGGTGCTCATGTCGACCA
AGCTCAAGTCGACGTACCAGAAGGAAGTGGACTCGTTCGGCGCGCTGCAC
GTGCCGACGGAGTTGGGCACGCTGTACATCTTCGTCCCTTGCCTGTTGCT
GGCTGTGGTGTGACTTTGTCTACCACGCGGCGGAGATATGCTCGCTCGCC
CTGGCGGGGGGCTGCGTGGTGCTCATGTCGACCAAGCTCAAGTCGACGTA
CCAGAAGGAAGTGGACTCGTTCGGCGCGCTGCACGTGCCGACGGAGTTGG
GCACGCTGTACATCTTCGTCCCTTGCCTGTTGCTGGCTGTGGTG
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