mRNA_L-elsbetiae_contig1427.3165.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE) HSP 1 Score: 124 bits (310), Expect = 5.180e-32 Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 1 Query: 52 AAMETCSACRRADDGTGLRKPRPRRAEQFLQFGGESGVSVMFPNRLMGVGDPLM--LCKRTGCMLKLFEQRE---NRERKSHAAG--PRKRRSSTQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513 ++ CSAC + G R+ R R E F E+G++ FP G P + LCKR+GC+L+L+++ E +RER + A PR R+ + PEPV H +RR +DRYCTSP AVDAL V+I G VLDMCGG DAVA+ G TC V+TNDV +R Sbjct: 27 SSSRRCSAC--LECGEDFRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMCGGPDDAVAMGFGGTCEVLTNDVSSR 185
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5L2F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2F6_9PHAE) HSP 1 Score: 115 bits (289), Expect = 5.610e-29 Identity = 79/176 (44.89%), Postives = 98/176 (55.68%), Query Frame = 1 Query: 115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDP----LMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR*EEFGCKVDSSYVNTTPL*VVLCGASVNPFSTGSQFGE 627 R R F +G+ FP + GDP L+LCKR GC+L+LF + RE ++ KR T PEPV L+RR +DRYCTSPAA++AL+ VSI G VLDMCGG DAVA+RL +TC V+TNDVR R V TTPL + L ST S+ GE Sbjct: 2 RERTGGNVRAFLEAAGMGDKFPG--LKCGDPSIGKLVLCKRAGCLLELFVLNQQRESRAPTERRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVRPR---RMINAVCLLVWTTPLYMCL--------STSSRLGE 164
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KD02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD02_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.310e-27 Identity = 69/142 (48.59%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDP----LMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-----TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513 R R F +GV+ FP + GDP L+LCKR GC+L+LF N++++S A P KRR+ T PEPV L+RR +DRYCTSPAA++AL+ +VSI G VLD CGG DA+ RL +TC V+TNDVR R Sbjct: 2 RERTGGNVRSFVEAAGVADKFP--ALKCGDPDVDKLVLCKRGGCLLELFVL--NKQKESRA--PSKRRAKRGPKWTCAPEPVKQLKRRCFDRYCTSPAALEALLGDVSISGCVLDTCGGAGDAIVTRLRDTCQVLTNDVRPR 137
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE) HSP 1 Score: 107 bits (266), Expect = 5.490e-25 Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 1 Query: 202 DPLMLCKRTGCMLKLFEQRENRERKSHAAGPRKRRSS-----TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDVRTR 513 D L+LCKR GC+L+LF N++R S A P KRR+ T PEPV L+RR DRYCTSPA ++AL+ VSI G VLDMCGG DAVA+RL +TC V+TNDV R Sbjct: 16 DKLVLCKRAGCLLELFVL--NQQRDSRA--PTKRRAKRGPKWTCAPEPVKQLKRRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPR 120
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5JSC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC3_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 5.730e-18 Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 313 TQVPEPVGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCTVVTNDV 504 T PEPV L+RR +DRYCTSP A++AL+ VSI G VLDMCGG DAV RL +TC V+TNDV Sbjct: 11 TCAPEPVKQLKRRCFDRYCTSPTALEALLGVVSISGCVLDMCGGPGDAVVTRLRDTCQVLTNDV 74
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5KES8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES8_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.110e-13 Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 1 Query: 115 RPRRAEQFLQFGGESGVSVMFPNRLMGVGDPLM--LCKRTGCMLKLFEQRE---NRERKSHAAG--PRKRRSSTQVPEPVGHLQRRPYDRYCTSPAAVDAL 396 R R E F E+G++ FP G P + LCKR+GC+L+L+++ E +RER + A PR R+ + PEPV H +RR +DRYCTSP AVDAL Sbjct: 23 RARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDAL 123
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Match: A0A6H5L1N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N5_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 4.000e-10 Identity = 34/52 (65.38%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 331 VGHLQRRPYDRYCTSPAAVDALIAEVSIEGLVLDMCGG*TDAVALRLGETCT 486 + RR DRYCTSPAAVDAL A V+I G VLDMCGG DAVA G TCT Sbjct: 37 LSRTTRRRLDRYCTSPAAVDALRAAVAITGCVLDMCGGPEDAVAQGFGGTCT 88 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1427.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1427.3165.1 >prot_L-elsbetiae_contig1427.3165.1 ID=prot_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp METCSACRRADDGTGLRKPRPRRAEQFLQFGGESGVSVMFPNRLMGVGDPback to top mRNA from alignment at L-elsbetiae_contig1427:10013..10662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1427.3165.1 ID=mRNA_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:10013..10662+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1427:10013..10662+ >mRNA_L-elsbetiae_contig1427.3165.1 ID=mRNA_L-elsbetiae_contig1427.3165.1|Name=mRNA_L-elsbetiae_contig1427.3165.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:10013..10662+ (Laminarionema elsbetiae ELsaHSoW15)back to top |