mRNA_L-elsbetiae_contig1427.3166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1427.3166.1
Unique NamemRNA_L-elsbetiae_contig1427.3166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.930e-23
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+ GVALKLPLSF+EPCADRA WL+EN PS+C+ + R+ Y PAHV VGEFWGVWY
Sbjct:   58 VAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWY 113
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.080e-21
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+ GVALK  LSF+EPC DRA WL+ N P+VCVFLRR++YTP HV++GEFWGVWY
Sbjct:  223 VAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWY 278
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.940e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+ GVALKLPLSF+EPCADRA WL+ N P++C+ + R+ Y PAHV VGEFWGVWY
Sbjct:   99 VAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWY 154
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.660e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+ GVALKLPLSF+EPCADRA WL+ N P++C+ + R+ Y PAHV VGEFWGVWY
Sbjct:  169 VAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWY 224
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5K9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.330e-20
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+  VALKLPLSF+EPCADR  WL+ N P++C+ + R+ Y PAHV VGEFWGVWY
Sbjct:   79 VAKESVALKLPLSFLEPCADREGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWY 134
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.610e-20
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAH-VIVGEFWGVWY 343
            VA  GVALKLPLSF+EPCADR  WL +N P+VC+FLRR+ YT AH V VGEFWGVWY
Sbjct:  227 VATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWY 283
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5K7Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.340e-18
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAH-VIVGEFWGVWY 343
            +A  GVALK+PLSF+EP ADR  WLK N PSVCVFLRR+ YT A+   +GEFWGVWY
Sbjct:    3 LATKGVALKMPLSFLEPYADRGGWLKTNPPSVCVFLRRAKYTRANNAKMGEFWGVWY 59
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BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.450e-18
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAH-VIVGEFWGVWY 343
            VA  GVAL+LPLSF +PCADR +WL +N P +C FLRR+ YT AH V VGEFWGVWY
Sbjct:   59 VAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWY 115
[Close]
BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.050e-18
Identity = 37/56 (66.07%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAHVIVGEFWGVWY 343
            VA+ GVALKLPLSF+EPCADRA WL+ N P++C+ + R+ Y PA V VGEF GVWY
Sbjct:   59 VAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWY 114
[Close]
BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.870e-17
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:  176 VARFGVALKLPLSFMEPCADRATWLKENSPSVCVFLRRSTYTPAH-VIVGEFWGVWY 343
            +A  GVA K+P+ F+EPCADR  WL+ N PSVCVFLRR+ YT A+    GEFWGVWY
Sbjct:   76 LATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWY 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1427.3166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KAM1_9PHAE2.930e-2373.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE1.080e-2171.43Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE1.940e-2169.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE6.660e-2169.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B9_9PHAE4.330e-2066.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE6.610e-2073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z8_9PHAE1.340e-1868.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K929_9PHAE1.450e-1868.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE2.050e-1866.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI4.870e-1763.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1427contigL-elsbetiae_contig1427:11288..11638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size353
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.744911-CDS-L-elsbetiae_contig1427:11287..116381622815569.744911-CDS-L-elsbetiae_contig1427:11287..11638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 11288..11638 +
1691682965.5001247-CDS-L-elsbetiae_contig1427:11287..116381691682965.5001247-CDS-L-elsbetiae_contig1427:11287..11638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1427 11288..11638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1427.3166.1prot_L-elsbetiae_contig1427.3166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1427 11288..11638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1427.3166.1

>prot_L-elsbetiae_contig1427.3166.1 ID=prot_L-elsbetiae_contig1427.3166.1|Name=mRNA_L-elsbetiae_contig1427.3166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
PPCLCYVLHFCLGVLYLNPGVRTRGWMRAAAAFPGSTLRRQANNPIGSLQ
ALLTRVRLSSSFRRCPEVAPLFHGAMRRPGHLAERKFSVGLCFFEEVNVH
PCACHCRGVLGRVVQE*
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mRNA from alignment at L-elsbetiae_contig1427:11288..11638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1427.3166.1 ID=mRNA_L-elsbetiae_contig1427.3166.1|Name=mRNA_L-elsbetiae_contig1427.3166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=351bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:11288..11638+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCTTGTCTTTGTTATGTTTTGCATTTTTGTTTGGGGGTTCTGTATCT
CAATCCAGGTGTGCGGACACGAGGCTGGATGCGAGCAGCGGCAGCTTTCC
CCGGGAGTACCTTGAGACGGCAGGCCAACAACCCGATTGGGTCGTTGCAA
GCCCTCCTTACAAGGGTGCGATTAAGTAGCTCGTTTCGGCGTTGCCCTGA
AGTTGCCCCTCTCTTTCATGGAGCCATGCGCAGACCGGGCCACCTGGCTG
AAAGAAAATTCTCCGTCGGTCTGTGTTTTTTTGAGGAGGTCAACGTACAC
CCCTGCGCATGTCATTGTAGGGGAGTTCTGGGGCGTGTGGTACAAGAGTG
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1427:11288..11638+

>mRNA_L-elsbetiae_contig1427.3166.1 ID=mRNA_L-elsbetiae_contig1427.3166.1|Name=mRNA_L-elsbetiae_contig1427.3166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1427:11288..11638+ (Laminarionema elsbetiae ELsaHSoW15)
CCACCTTGTCTTTGTTATGTTTTGCATTTTTGTTTGGGGGTTCTGTATCT
CAATCCAGGTGTGCGGACACGAGGCTGGATGCGAGCAGCGGCAGCTTTCC
CCGGGAGTACCTTGAGACGGCAGGCCAACAACCCGATTGGGTCGTTGCAA
GCCCTCCTTACAAGGGTGCGATTAAGTAGCTCGTTTCGGCGTTGCCCTGA
AGTTGCCCCTCTCTTTCATGGAGCCATGCGCAGACCGGGCCACCTGGCTG
AAAGAAAATTCTCCGTCGGTCTGTGTTTTTTTGAGGAGGTCAACGTACAC
CCCTGCGCATGTCATTGTAGGGGAGTTCTGGGGCGTGTGGTACAAGAGTG
ACCACCTTGTCTTTGTTATGTTTTGCATTTTTGTTTGGGGGTTCTGTATC
TCAATCCAGGTGTGCGGACACGAGGCTGGATGCGAGCAGCGGCAGCTTTC
CCCGGGAGTACCTTGAGACGGCAGGCCAACAACCCGATTGGGTCGTTGCA
AGCCCTCCTTACAAGGGTGCGATTAAGTAGCTCGTTTCGGCGTTGCCCTG
AAGTTGCCCCTCTCTTTCATGGAGCCATGCGCAGACCGGGCCACCTGGCT
GAAAGAAAATTCTCCGTCGGTCTGTGTTTTTTTGAGGAGGTCAACGTACA
CCCCTGCGCATGTCATTGTAGGGGAGTTCTGGGGCGTGTGGTACAAGAGT
GA
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