mRNA_L-elsbetiae_contig14266.3162.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14266.3162.1
Unique NamemRNA_L-elsbetiae_contig14266.3162.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14266.3162.1 vs. uniprot
Match: D8LM21_ECTSI (Stn1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM21_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.780e-41
Identity = 72/87 (82.76%), Postives = 78/87 (89.66%), Query Frame = 2 
Query:    2 KTVYRPPFQRSEYVDEDLVLRSSQARPTRCDCGAAYAEAVGYCRCVAAPVALDPAFEFRDALLAHLAAREESLPDPGEHLRFQFARD 262
            KTVYRPPFQR +Y+DE+LV  SSQARPT+C CGAAYAEAVGYCRCVAAP+ALDP FEFRDALLA LAA+EESL  P EHLRFQFARD
Sbjct:  190 KTVYRPPFQRDDYIDEELVAGSSQARPTQCGCGAAYAEAVGYCRCVAAPLALDPTFEFRDALLARLAAKEESLAGPDEHLRFQFARD 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14266.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM21_ECTSI1.780e-4182.76Stn1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14266contigL-elsbetiae_contig14266:1916..2711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.581563-CDS-L-elsbetiae_contig14266:1915..19431622815569.581563-CDS-L-elsbetiae_contig14266:1915..1943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 1916..1943 +
1691682965.4082801-CDS-L-elsbetiae_contig14266:1915..19431691682965.4082801-CDS-L-elsbetiae_contig14266:1915..1943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 1916..1943 +
1622815569.592626-CDS-L-elsbetiae_contig14266:2463..27111622815569.592626-CDS-L-elsbetiae_contig14266:2463..2711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 2464..2711 +
1691682965.4192343-CDS-L-elsbetiae_contig14266:2463..27111691682965.4192343-CDS-L-elsbetiae_contig14266:2463..2711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14266 2464..2711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14266.3162.1prot_L-elsbetiae_contig14266.3162.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14266 1916..2711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14266.3162.1

>prot_L-elsbetiae_contig14266.3162.1 ID=prot_L-elsbetiae_contig14266.3162.1|Name=mRNA_L-elsbetiae_contig14266.3162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
ENSLPPSVSAQRVRRRGPRPAVEPGPADAVRLRRRLRGGRRVLPLRRGPR
GPRPGLRVPRRPARPSGGQGGKPPGPGRTPPLPVRPRRERRA
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mRNA from alignment at L-elsbetiae_contig14266:1916..2711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14266.3162.1 ID=mRNA_L-elsbetiae_contig14266.3162.1|Name=mRNA_L-elsbetiae_contig14266.3162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=796bp|location=Sequence derived from alignment at L-elsbetiae_contig14266:1916..2711+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAACAGTCTACCGCCCTCCGTTTCAGGTGAGAGAGCTCAGAGAGTCCG
CTTCAAACCAACTTGACGTCGAGTATGACGTTTTGAGTCTCGGTTTTTGG
CGTTCAGAGATCCAGGGCCTGAAAGCGGTGGAATTGACACGGCGAACGTT
TCGTAAGCACGGTATGGTTTGTGTATTTGGCTCACGCCTACGCTTCACGT
CAGTTGGCCACTCTTTTGTGAACAAGACCGTTCTGTATTGCCACCCCGTC
GCGACCCCGAAACCCCGTACCCCCCAGAGCACGGGATCATTTTCTAGGTG
TCCTTGACCACAAGAACCCAACGTCGAAACGCCCACGCCCACAATACAGC
AACACCAGCAGCGTGACATATAAGCCCGTGCCGTTTTCTATCTGCAGTGT
ATGACCCCTTGCCCCCGCCTATGTCTCCCCCCCCCCCGTCTACGCTGGTT
TTGTCTTCTCGGCTTCGCTTCGATCGGTCTTGACAACAACTGCACACGCG
AACATCCCACACACGTCGCCACCACCACCACCACTGTGACAAAAGCAGCG
CAGCGAGTACGTCGACGAGGACCTCGTCCTGCGGTCGAGCCAGGCCCGGC
CGACGCGGTGCGACTGCGGCGCCGCCTACGCGGAGGCCGTCGGGTACTGC
CGCTGCGTCGCGGCCCCCGTGGCCCTCGACCCGGCCTTCGAGTTCCGAGA
CGCCCTGCTCGCCCATCTGGCGGCCAGGGAGGAAAGCCTCCCGGACCCGG
GCGAACACCTCCGCTTCCAGTTCGCCCGAGACGTGAGAGACGAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14266:1916..2711+

>mRNA_L-elsbetiae_contig14266.3162.1 ID=mRNA_L-elsbetiae_contig14266.3162.1|Name=mRNA_L-elsbetiae_contig14266.3162.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig14266:1916..2711+ (Laminarionema elsbetiae ELsaHSoW15)
GAAAACAGTCTACCGCCCTCCGTTTCAGGAAAACAGTCTACCGCCCTCCG
TTTCAGCGCAGCGAGTACGTCGACGAGGACCTCGTCCTGCGGTCGAGCCA
GGCCCGGCCGACGCGGTGCGACTGCGGCGCCGCCTACGCGGAGGCCGTCG
GGTACTGCCGCTGCGTCGCGGCCCCCGTGGCCCTCGACCCGGCCTTCGAG
TTCCGAGACGCCCTGCTCGCCCATCTGGCGGCCAGGGAGGAAAGCCTCCC
GGACCCGGGCGAACACCTCCGCTTCCAGTTCGCCCGAGACGTGAGAGACG
AGCCCGCAGCGAGTACGTCGACGAGGACCTCGTCCTGCGGTCGAGCCAGG
CCCGGCCGACGCGGTGCGACTGCGGCGCCGCCTACGCGGAGGCCGTCGGG
TACTGCCGCTGCGTCGCGGCCCCCGTGGCCCTCGACCCGGCCTTCGAGTT
CCGAGACGCCCTGCTCGCCCATCTGGCGGCCAGGGAGGAAAGCCTCCCGG
ACCCGGGCGAACACCTCCGCTTCCAGTTCGCCCGAGACGTGAGAGACGAG
CC
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