mRNA_L-elsbetiae_contig14265.3160.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14265.3160.1
Unique NamemRNA_L-elsbetiae_contig14265.3160.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.260e-39
Identity = 104/142 (73.24%), Postives = 111/142 (78.17%), Query Frame = 1 
Query:   13 TYADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGGXXXXXXXXXXXXXXXDGGSKTKLVSAVAGGGDDLYGGADDSLHSLDVDRIIESMELEAGVDGDAA-EAGGRRSGSGIPPWRASA 435
            TY DGN G  S+SGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS ADRANGFG  XXXXXXXXX        + T+LVS+V G G DLYG ADD+L SLDVD+IIESMELEAG D D    AGG   GSG+ PWRASA
Sbjct:   82 TYGDGNNG--SLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGAGXXXXXXXXX--------AMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG--GGSGMTPWRASA 211
[Close]
BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 6.430e-34
Identity = 107/169 (63.31%), Postives = 115/169 (68.05%), Query Frame = 1 
Query:   16 YADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGGXXXXXXXXXXXXXXXDGGSKTKLVSAVAGGGDDLYGGADDSLHSLDVDRIIESMELEAGVDGDAA-EAGGRRSGSGIPPWRASAAGAAXXXXXXXXXXXGSSRRRSFTTDGT 519
            Y DGN G  S+SGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS          XXXXXXXXXXXX      + T+LVS+V G G DLYG ADD+L SLDVD+IIESMELEAG D D    AGG   GSG+ PWRAS AG              S RRRS T DG+
Sbjct:   91 YGDGNNG--SLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXX------AMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG--GGSGMTPWRASVAGGGVSTTATAW----SGRRRSSTADGS 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE2.260e-3973.24Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI6.430e-3463.31Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14265contigL-elsbetiae_contig14265:2728..3518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue3.6e-31
Seed eggNOG ortholog2880.D8LRX0
KEGG koko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023
EggNOG free text desc.endosomal vesicle fusion
EggNOG OGsKOG2079@1,KOG2079@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size792
Cds size789
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.4379642-CDS-L-elsbetiae_contig14265:2727..35161622815569.4379642-CDS-L-elsbetiae_contig14265:2727..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 2728..3516 +
1691682965.3333209-CDS-L-elsbetiae_contig14265:2727..35161691682965.3333209-CDS-L-elsbetiae_contig14265:2727..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14265 2728..3516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14265.3160.1prot_L-elsbetiae_contig14265.3160.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14265 2728..3516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14265.3160.1

>prot_L-elsbetiae_contig14265.3160.1 ID=prot_L-elsbetiae_contig14265.3160.1|Name=mRNA_L-elsbetiae_contig14265.3160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
SSGGTYADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIA
ASAADRANGFGGGFGNGGNGNGNGNGNDGGSKTKLVSAVAGGGDDLYGGA
DDSLHSLDVDRIIESMELEAGVDGDAAEAGGRRSGSGIPPWRASAAGAAG
AGADTAGAATGSSRRRSFTTDGTGGGDGGSGGEGAAEAGGRDRGASASGA
SAAASPASTPNDGYGLGLPRVSDIAAVRKQNGEPPSRARRKPSQGTGRPG
ATGGSKLSTAGAG
back to top

mRNA from alignment at L-elsbetiae_contig14265:2728..3518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14265.3160.1 ID=mRNA_L-elsbetiae_contig14265.3160.1|Name=mRNA_L-elsbetiae_contig14265.3160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=791bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:2728..3518+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCGGCGGCACCTACGCCGACGGCAACGGCGGCGTCAGCTCGGTGTC
GGGGGCGCCGCCGCGGACGGCGTTCCTCAGCCGGGACGAGGTGTCGGAGG
ACTCTCGCCTCCTGCAGCAGATACTGAGGGAGAGCGAGGAGGAGATCGCC
GCCTCGGCCGCGGACCGTGCCAATGGCTTCGGCGGCGGCTTCGGCAACGG
CGGCAACGGCAACGGCAACGGCAACGGCAACGACGGCGGCTCCAAAACAA
AGCTTGTCTCCGCGGTGGCGGGGGGGGGCGACGATCTGTACGGGGGCGCG
GACGACAGCCTGCACAGCTTGGACGTGGACAGGATCATTGAATCCATGGA
GCTGGAGGCTGGAGTGGACGGCGACGCCGCGGAGGCCGGCGGGAGGCGTA
GTGGTAGCGGCATCCCCCCTTGGAGAGCCTCTGCGGCAGGAGCGGCGGGG
GCAGGAGCGGATACAGCGGGAGCGGCGACGGGCTCGTCACGCCGGCGTTC
CTTCACCACCGATGGGACCGGTGGCGGCGACGGCGGTAGCGGCGGCGAGG
GAGCTGCGGAGGCGGGGGGGCGAGATCGCGGAGCAAGCGCCAGCGGGGCT
TCAGCGGCGGCTTCTCCGGCATCGACACCGAACGATGGCTACGGCCTCGG
TCTCCCTCGCGTGTCGGACATCGCGGCGGTTAGAAAACAGAACGGGGAGC
CGCCGTCGAGAGCGAGGAGAAAGCCCTCCCAGGGCACTGGTCGGCCCGGT
GCCACAGGAGGGTCGAAACTCTCGACGGCTGGCGCTGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14265:2728..3518+

>mRNA_L-elsbetiae_contig14265.3160.1 ID=mRNA_L-elsbetiae_contig14265.3160.1|Name=mRNA_L-elsbetiae_contig14265.3160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig14265:2728..3518+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCGGCGGCACCTACGCCGACGGCAACGGCGGCGTCAGCTCGGTGTC
GGGGGCGCCGCCGCGGACGGCGTTCCTCAGCCGGGACGAGGTGTCGGAGG
ACTCTCGCCTCCTGCAGCAGATACTGAGGGAGAGCGAGGAGGAGATCGCC
GCCTCGGCCGCGGACCGTGCCAATGGCTTCGGCGGCGGCTTCGGCAACGG
CGGCAACGGCAACGGCAACGGCAACGGCAACGACGGCGGCTCCAAAACAA
AGCTTGTCTCCGCGGTGGCGGGGGGGGGCGACGATCTGTACGGGGGCGCG
GACGACAGCCTGCACAGCTTGGACGTGGACAGGATCATTGAATCCATGGA
GCTGGAGGCTGGAGTGGACGGCGACGCCGCGGAGGCCGGCGGGAGGCGTA
GTGGTAGCGGCATCCCCCCTTGGAGAGCCTCTGCGGCAGGAGCGGCGGGG
GCAGGAGCGGATACAGCGGGAGCGGCGACGGGCTCGTCACGCCGGCGTTC
CTTCACCACCGATGGGACCGGTGGCGGCGACGGCGGTAGCGGCGGCGAGG
GAGCTGCGGAGGCGGGGGGGCGAGATCGCGGAGCAAGCGCCAGCGGGGCT
TCAGCGGCGGCTTCTCCGGCATCGACACCGAACGATGGCTACGGCCTCGG
TCTCCCTCGCGTGTCGGACATCGCGGCGGTTAGAAAACAGAACGGGGAGC
CGCCGTCGAGAGCGAGGAGAAAGCCCTCCCAGGGCACTGGTCGGCCCGGT
GCCACAGGAGGGTCGAAACTCTCGACGGCTGGCGCTGGGAGCAGCGGCGG
CACCTACGCCGACGGCAACGGCGGCGTCAGCTCGGTGTCGGGGGCGCCGC
CGCGGACGGCGTTCCTCAGCCGGGACGAGGTGTCGGAGGACTCTCGCCTC
CTGCAGCAGATACTGAGGGAGAGCGAGGAGGAGATCGCCGCCTCGGCCGC
GGACCGTGCCAATGGCTTCGGCGGCGGCTTCGGCAACGGCGGCAACGGCA
ACGGCAACGGCAACGGCAACGACGGCGGCTCCAAAACAAAGCTTGTCTCC
GCGGTGGCGGGGGGGGGCGACGATCTGTACGGGGGCGCGGACGACAGCCT
GCACAGCTTGGACGTGGACAGGATCATTGAATCCATGGAGCTGGAGGCTG
GAGTGGACGGCGACGCCGCGGAGGCCGGCGGGAGGCGTAGTGGTAGCGGC
ATCCCCCCTTGGAGAGCCTCTGCGGCAGGAGCGGCGGGGGCAGGAGCGGA
TACAGCGGGAGCGGCGACGGGCTCGTCACGCCGGCGTTCCTTCACCACCG
ATGGGACCGGTGGCGGCGACGGCGGTAGCGGCGGCGAGGGAGCTGCGGAG
GCGGGGGGGCGAGATCGCGGAGCAAGCGCCAGCGGGGCTTCAGCGGCGGC
TTCTCCGGCATCGACACCGAACGATGGCTACGGCCTCGGTCTCCCTCGCG
TGTCGGACATCGCGGCGGTTAGAAAACAGAACGGGGAGCCGCCGTCGAGA
GCGAGGAGAAAGCCCTCCCAGGGCACTGGTCGGCCCGGTGCCACAGGAGG
GTCGAAACTCTCGACGGCTGGCGCTGGG
back to top