mRNA_L-elsbetiae_contig14261.3158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14261.3158.1
Unique NamemRNA_L-elsbetiae_contig14261.3158.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14261.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14261contigL-elsbetiae_contig14261:3869..4456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815569.3931966-CDS-L-elsbetiae_contig14261:3868..39691622815569.3931966-CDS-L-elsbetiae_contig14261:3868..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14261 3869..3969 +
1691682965.3158047-CDS-L-elsbetiae_contig14261:3868..39691691682965.3158047-CDS-L-elsbetiae_contig14261:3868..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14261 3869..3969 +
1622815569.4037747-CDS-L-elsbetiae_contig14261:4374..44561622815569.4037747-CDS-L-elsbetiae_contig14261:4374..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14261 4375..4456 +
1691682965.3244445-CDS-L-elsbetiae_contig14261:4374..44561691682965.3244445-CDS-L-elsbetiae_contig14261:4374..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14261 4375..4456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14261.3158.1prot_L-elsbetiae_contig14261.3158.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14261 3869..4456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14261.3158.1

>prot_L-elsbetiae_contig14261.3158.1 ID=prot_L-elsbetiae_contig14261.3158.1|Name=mRNA_L-elsbetiae_contig14261.3158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MVPKAEIKAKEGFDSCVDRARVSTKYRHLRTTKRITYPKKGVDFTERNGE
RKKTDPKAPQS
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mRNA from alignment at L-elsbetiae_contig14261:3869..4456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14261.3158.1 ID=mRNA_L-elsbetiae_contig14261.3158.1|Name=mRNA_L-elsbetiae_contig14261.3158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig14261:3869..4456+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCGAAGGCCGAGATCAAAGCTAAGGAAGGGTTCGACAGCTGTGT
TGACCGCGCTCGAGTTTCTACCAAGTACCGTCATCTCCGAACAACGAAGA
GGTGTCGGTCCTCCGTCTTATGATGCCGTCGCTTCTGCCCCTGCACGCGC
TGCTCTTGCTCTCTTGTTGCTCACGAATTGTTGTCGTCGTCGTCCGGTAG
CGGCGTCGTTGTTGTCCCGCGGAAAAAAAAAAAATGGCATGGGGGAAGGG
GGGCGCGAAGACTCGTTTGGTACGGGCGCTGCTGCAATAGATACACAGTT
CCCCGGCTTTGCTGCTGGTCAGGAATCTACAATAACATTTGGCCTCAAGA
ATAGCGAAAATGCTACATACATACGCCGGGTGGCTGGGTACTGTTGTTGT
TGCAGTTGTTTGTCTTCACATTGAAAACCGTTCGGATCTCTTTCTCCAGT
ACCCCCATTTGTCCGTACTAATCCGACACTGACGCGGTCGATCCCCGTGG
TCCCAGGATAACTTACCCTAAGAAGGGGGTAGACTTTACTGAAAGAAATG
GAGAGAGAAAAAAAACGGACCCGAAGGCTCCGCAAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14261:3869..4456+

>mRNA_L-elsbetiae_contig14261.3158.1 ID=mRNA_L-elsbetiae_contig14261.3158.1|Name=mRNA_L-elsbetiae_contig14261.3158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig14261:3869..4456+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCCGAAGGCCGAGATCAAAGCTAAGGAAGGGTTCGACAGCTGTGT
TGACCGCGCTCGAGTTTCTACCAAGTACCGTCATCTCCGAACAACGAAGA
GATGGTGCCGAAGGCCGAGATCAAAGCTAAGGAAGGGTTCGACAGCTGTG
TTGACCGCGCTCGAGTTTCTACCAAGTACCGTCATCTCCGAACAACGAAG
AGGATAACTTACCCTAAGAAGGGGGTAGACTTTACTGAAAGAAATGGAGA
GAGAAAAAAAACGGACCCGAAGGCTCCGCAAAGCGATAACTTACCCTAAG
AAGGGGGTAGACTTTACTGAAAGAAATGGAGAGAGAAAAAAAACGGACCC
GAAGGCTCCGCAAAGC
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