mRNA_L-elsbetiae_contig14245.3150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14245.3150.1
Unique NamemRNA_L-elsbetiae_contig14245.3150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A6H5J7N3_9PHAE (E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7N3_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.220e-52
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1 
Query:    1 SPIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            SPIRQWMYYDA EALPEKPL+KEEVQP+GCRYDGSIMVFG+TMQ LLGKQ LFLVGAGAIGCEMLKNWAMMGVGC GDG+VHVTDMD+IEKSNLSR
Sbjct:  459 SPIRQWMYYDAFEALPEKPLAKEEVQPLGCRYDGSIMVFGKTMQALLGKQKLFLVGAGAIGCEMLKNWAMMGVGCDGDGQVHVTDMDNIEKSNLSR 554
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A836CIM1_9STRA (Ubiquitin-activating enzyme E1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIM1_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.710e-40
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKP----LSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PIRQW+Y+DA EALP       L+ EEVQP  CRYDG IMVFG+T+Q  LG QNLFLVGAGAIGCEMLKNWAMMGVGC   G +HVTDMDHIE+SNLSR
Sbjct:  375 PIRQWLYWDAEEALPAAAEGGVLAVEEVQPQNCRYDGQIMVFGKTLQAALGAQNLFLVGAGAIGCEMLKNWAMMGVGCGPGGAIHVTDMDHIERSNLSR 473
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: I2CSG2_NANGC (E1 ubiquitin-activating enzyme n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSG2_NANGC)

HSP 1 Score: 145 bits (365), Expect = 3.360e-38
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 SPIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            SPI+QW Y+DA E LP +P+S+ E  P+ CRYDG I VFG+++Q++LG+Q  FLVGAGAIGCEMLKNWAMMGVG    G VHVTDMD IEKSNLSR
Sbjct:  398 SPIKQWFYFDALECLPTEPVSEAEAAPLNCRYDGQIAVFGKSVQQILGQQAYFLVGAGAIGCEMLKNWAMMGVGTGEKGAVHVTDMDRIEKSNLSR 493
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S2V749_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V749_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.170e-37
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 SPIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            +PI+QW+Y+DA E LPE+PL+ EE QP G RYDG I V GRT+Q+ LG  +LFLVGAGAIGCE+LKNWAMMGV       VHVTDMD IE+SNLSR
Sbjct:   65 TPIKQWLYFDAVECLPEEPLAPEEYQPTGSRYDGQIAVLGRTVQQQLGGLSLFLVGAGAIGCEVLKNWAMMGVATQDQACVHVTDMDGIERSNLSR 160
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S3HQ07_9STRA (E1 ubiquitin-activating enzyme n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQ07_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.500e-37
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGC--------SGDGK----VHVTDMDHIEKSNLSR 288
            P++QW YYDA EAL + PLS EEV P+GCRYDG IMVFGR +Q  LG+ N+FLVGAGAIGCEM+KNWAMMG+ C        S  GK    V+VTDMD IEKSNLSR
Sbjct:  410 PVKQWFYYDAIEALHDTPLSAEEVAPLGCRYDGQIMVFGRELQNKLGELNMFLVGAGAIGCEMIKNWAMMGIACGTLNNSASSAKGKTQGTVYVTDMDQIEKSNLSR 516
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S2WKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKJ9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.360e-36
Identity = 63/95 (66.32%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PIRQW Y+DA EALP+  L   EVQPIG R+D  I VFGR +Q  +     FLVGAGAIGCEMLKNWA+MGVG    G+VH+TDMD IEKSNLSR
Sbjct:   21 PIRQWFYFDAMEALPDPLLPAGEVQPIGSRHDSQIAVFGRDLQGKIESLKYFLVGAGAIGCEMLKNWALMGVGTGETGRVHLTDMDTIEKSNLSR 115
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S1XMG5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMG5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.120e-35
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PIRQW Y DA E L ++PL  EEV P G RYDG I V+G T+Q  +  Q +FLVGAGAIGCEMLKNWAMMGVGC   G VHVTDMD IE+SNLSR
Sbjct:  404 PIRQWFYIDALETLSDEPLPAEEVAPRGSRYDGQIAVYGATLQTKICAQRVFLVGAGAIGCEMLKNWAMMGVGCGDAGGVHVTDMDRIERSNLSR 498
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BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S1TWZ4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWZ4_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.790e-35
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PIRQW Y DA E L ++PL  EEV P G RYDG I V+G T+Q  +  Q +FLVGAGAIGCEMLKNWAMMGVGC   G VHVTDMD IE+SNLSR
Sbjct:  404 PIRQWFYIDALETLSDEPLPAEEVAPRGSRYDGQIAVYGATLQTKICAQRVFLVGAGAIGCEMLKNWAMMGVGCGDAGGVHVTDMDRIERSNLSR 498
[Close]
BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: UPI001471E851 (ubiquitin-like modifier-activating enzyme 1 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471E851)

HSP 1 Score: 132 bits (332), Expect = 9.490e-34
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKP---LSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PIRQW+Y+DA E LPE+    L++EE  P  CRYDG I VFGR +QE+L KQ  FLVGAGAIGCE+LKN+AMMG+ C G+GKV VTDMD IEKSNL+R
Sbjct:  419 PIRQWLYFDALECLPEEDGVLLTEEECAPRNCRYDGQIAVFGRKLQEILAKQRYFLVGAGAIGCELLKNFAMMGLAC-GEGKVIVTDMDTIEKSNLNR 515
[Close]
BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Match: A0A7S1TGH3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TGH3_9RHOD)

HSP 1 Score: 130 bits (328), Expect = 3.290e-33
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    4 PIRQWMYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVGAGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSR 288
            PI Q+ Y+D  EALPE P S+E+ +P  CRYDG IM+FG + QE + + N FLVGAGAIGCEMLKNWAMMGVG    GK+ VTDMD IEKSNLSR
Sbjct:  380 PIMQYFYFDCTEALPEPPPSEEDCRPQNCRYDGQIMIFGASFQEKISQLNYFLVGAGAIGCEMLKNWAMMGVGAK-KGKIVVTDMDRIEKSNLSR 473
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14245.3150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7N3_9PHAE1.220e-5290.63E1 ubiquitin-activating enzyme n=2 Tax=Ectocarpus ... [more]
A0A836CIM1_9STRA1.710e-4073.74Ubiquitin-activating enzyme E1 n=1 Tax=Tribonema m... [more]
I2CSG2_NANGC3.360e-3868.75E1 ubiquitin-activating enzyme n=1 Tax=Nannochloro... [more]
A0A7S2V749_9STRA1.170e-3767.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HQ07_9STRA5.500e-3765.42E1 ubiquitin-activating enzyme n=1 Tax=Spumella el... [more]
A0A7S2WKJ9_9STRA5.360e-3666.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1XMG5_9STRA5.120e-3568.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TWZ4_9STRA5.790e-3568.42Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI001471E8519.490e-3467.35ubiquitin-like modifier-activating enzyme 1 n=1 Ta... [more]
A0A7S1TGH3_9RHOD3.290e-3366.32Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14245contigL-elsbetiae_contig14245:265..957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.3e-41
Seed eggNOG ortholog2880.D7G2V5
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin activating enzyme activity
EggNOG OGsCOG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons2
Model size303
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14245.3150.1prot_L-elsbetiae_contig14245.3150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14245 265..939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.2954423-CDS-L-elsbetiae_contig14245:264..4351622815568.2954423-CDS-L-elsbetiae_contig14245:264..435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14245 265..435 -
1691682964.593768-CDS-L-elsbetiae_contig14245:264..4351691682964.593768-CDS-L-elsbetiae_contig14245:264..435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14245 265..435 -
1622815568.3079739-CDS-L-elsbetiae_contig14245:825..9391622815568.3079739-CDS-L-elsbetiae_contig14245:825..939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14245 826..939 -
1691682964.606418-CDS-L-elsbetiae_contig14245:825..9391691682964.606418-CDS-L-elsbetiae_contig14245:825..939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14245 826..939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.3192449-UTR-L-elsbetiae_contig14245:939..9571622815568.3192449-UTR-L-elsbetiae_contig14245:939..957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14245 940..957 -
1691682964.614448-UTR-L-elsbetiae_contig14245:939..9571691682964.614448-UTR-L-elsbetiae_contig14245:939..957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14245 940..957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14245.3150.1

>prot_L-elsbetiae_contig14245.3150.1 ID=prot_L-elsbetiae_contig14245.3150.1|Name=mRNA_L-elsbetiae_contig14245.3150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MYYDAAEALPEKPLSKEEVQPIGCRYDGSIMVFGRTMQELLGKQNLFLVG
AGAIGCEMLKNWAMMGVGCSGDGKVHVTDMDHIEKSNLSRYVRS*
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mRNA from alignment at L-elsbetiae_contig14245:265..957-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14245.3150.1 ID=mRNA_L-elsbetiae_contig14245.3150.1|Name=mRNA_L-elsbetiae_contig14245.3150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=693bp|location=Sequence derived from alignment at L-elsbetiae_contig14245:265..957- (Laminarionema elsbetiae ELsaHSoW15)
AGCCCGATTCGGCAGTGGATGTACTACGATGCGGCGGAAGCCCTGCCGGA
GAAGCCTCTCTCGAAGGAGGAGGTGCAGCCGATTGGGTGTCGCTACGACG
GCAGCATCATGGTCTTCGGCAGGACTATGCAGGTGAGGAGAGACACATCT
GTTGCGGTTGTCGTGTTCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTCTCTCTCTCTCTCTCTCTCGCTATCTCTCTCGCTATCTCTCTCGC
TATCTCTCTCGCTATCTCTCTCCCTCTCCCTCTCTCCCTCTCTCTCTTTC
TCTCCATTTCTCAAGAGCGTAGCATTTGCTCACATTAGGTCGCGCTACGT
TGAATCTCGTCGTGCGGCGTTACACCTATCACCCCCCACCACACAAAACT
CGTGCACTTGAGACACTCTTGGCGGAACTTTCCATCCTCCCGATCTTACC
CTCGTCCTGCTTGTCACGTTTGTTCCGGATGTGTGCGGTTTGGACACGTG
CCGACCTCATCCAACTGTACAGGAGCTGCTGGGCAAGCAGAATCTGTTTT
TGGTGGGCGCCGGTGCAATCGGGTGCGAAATGCTGAAGAACTGGGCCATG
ATGGGGGTGGGGTGCTCTGGCGACGGGAAGGTGCACGTGACCGACATGGA
TCACATCGAGAAGTCCAACCTGTCGAGGTATGTCCGTTCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14245:265..957-

>mRNA_L-elsbetiae_contig14245.3150.1 ID=mRNA_L-elsbetiae_contig14245.3150.1|Name=mRNA_L-elsbetiae_contig14245.3150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig14245:265..957- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTACGATGCGGCGGAAGCCCTGCCGGAGAAGCCTCTCTCGAAGGA
GGAGGTGCAGCCGATTGGGTGTCGCTACGACGGCAGCATCATGGTCTTCG
GCAGGACTATGCAGATGTACTACGATGCGGCGGAAGCCCTGCCGGAGAAG
CCTCTCTCGAAGGAGGAGGTGCAGCCGATTGGGTGTCGCTACGACGGCAG
CATCATGGTCTTCGGCAGGACTATGCAGGAGCTGCTGGGCAAGCAGAATC
TGTTTTTGGTGGGCGCCGGTGCAATCGGGTGCGAAATGCTGAAGAACTGG
GCCATGATGGGGGTGGGGTGCTCTGGCGACGGGAAGGTGCACGTGACCGA
CATGGATCACATCGAGAAGTCCAACCTGTCGAGGTATGTCCGTTCTTAAG
AGCTGCTGGGCAAGCAGAATCTGTTTTTGGTGGGCGCCGGTGCAATCGGG
TGCGAAATGCTGAAGAACTGGGCCATGATGGGGGTGGGGTGCTCTGGCGA
CGGGAAGGTGCACGTGACCGACATGGATCACATCGAGAAGTCCAACCTGT
CGAGGTATGTCCGTTCTTAA
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