mRNA_L-elsbetiae_contig14242.3148.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14242.3148.1
Unique NamemRNA_L-elsbetiae_contig14242.3148.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14242.3148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14242contigL-elsbetiae_contig14242:689..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size398
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815568.2057602-CDS-L-elsbetiae_contig14242:688..10841622815568.2057602-CDS-L-elsbetiae_contig14242:688..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 689..1084 +
1691682964.5588753-CDS-L-elsbetiae_contig14242:688..10841691682964.5588753-CDS-L-elsbetiae_contig14242:688..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14242 689..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14242.3148.1prot_L-elsbetiae_contig14242.3148.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14242 689..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14242.3148.1

>prot_L-elsbetiae_contig14242.3148.1 ID=prot_L-elsbetiae_contig14242.3148.1|Name=mRNA_L-elsbetiae_contig14242.3148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
SLSGRLFGRLLLVVAACGGGECQASGLPQARLDFWDYITYVNGRGIGRFD
RTRGSFYPPPLPSYTTYSNHSRGETHQSCDPHSMKPSCITEAKTEVNMVF
YYLKSVCREPRKNKEQKGFTLAVQHAYLTPVL
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mRNA from alignment at L-elsbetiae_contig14242:689..1084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14242.3148.1 ID=mRNA_L-elsbetiae_contig14242.3148.1|Name=mRNA_L-elsbetiae_contig14242.3148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig14242:689..1084+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTCTCGGGACGTCTCTTTGGGCGTCTCTTGCTGGTTGTTGCGGCGTG
CGGGGGGGGGGAGTGTCAAGCGTCTGGACTACCGCAGGCGCGTCTGGACT
TTTGGGACTACATAACCTATGTAAACGGAAGGGGGATTGGACGATTCGAC
AGGACACGCGGCTCTTTTTATCCCCCCCCCCTGCCTTCGTACACCACTTA
CTCGAATCACAGCAGGGGCGAGACACATCAGAGTTGTGATCCCCATAGCA
TGAAGCCTTCGTGTATCACCGAGGCGAAGACAGAAGTGAACATGGTATTT
TACTATCTGAAATCCGTGTGTAGAGAACCGAGAAAGAACAAAGAACAGAA
AGGTTTCACTTTGGCCGTACAACATGCATACCTGACTCCCGTTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14242:689..1084+

>mRNA_L-elsbetiae_contig14242.3148.1 ID=mRNA_L-elsbetiae_contig14242.3148.1|Name=mRNA_L-elsbetiae_contig14242.3148.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig14242:689..1084+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTCTCGGGACGTCTCTTTGGGCGTCTCTTGCTGGTTGTTGCGGCGTG
CGGGGGGGGGGAGTGTCAAGCGTCTGGACTACCGCAGGCGCGTCTGGACT
TTTGGGACTACATAACCTATGTAAACGGAAGGGGGATTGGACGATTCGAC
AGGACACGCGGCTCTTTTTATCCCCCCCCCCTGCCTTCGTACACCACTTA
CTCGAATCACAGCAGGGGCGAGACACATCAGAGTTGTGATCCCCATAGCA
TGAAGCCTTCGTGTATCACCGAGGCGAAGACAGAAGTGAACATGGTATTT
TACTATCTGAAATCCGTGTGTAGAGAACCGAGAAAGAACAAAGAACAGAA
AGGTTTCACTTTGGCCGTACAACATGCATACCTGACTCCCGTTCTGTCTC
TCTCGGGACGTCTCTTTGGGCGTCTCTTGCTGGTTGTTGCGGCGTGCGGG
GGGGGGGAGTGTCAAGCGTCTGGACTACCGCAGGCGCGTCTGGACTTTTG
GGACTACATAACCTATGTAAACGGAAGGGGGATTGGACGATTCGACAGGA
CACGCGGCTCTTTTTATCCCCCCCCCCTGCCTTCGTACACCACTTACTCG
AATCACAGCAGGGGCGAGACACATCAGAGTTGTGATCCCCATAGCATGAA
GCCTTCGTGTATCACCGAGGCGAAGACAGAAGTGAACATGGTATTTTACT
ATCTGAAATCCGTGTGTAGAGAACCGAGAAAGAACAAAGAACAGAAAGGT
TTCACTTTGGCCGTACAACATGCATACCTGACTCCCGTTCTG
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