mRNA_L-elsbetiae_contig14239.3146.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14239.3146.1
Unique NamemRNA_L-elsbetiae_contig14239.3146.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14239.3146.1 vs. uniprot
Match: D8LDW8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDW8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.290e-17
Identity = 57/141 (40.43%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:  817 VPEEPEHAYCSSVRCPRQTHRLVEGADTKRCKVVDFMAPTP-PRNEDRYGSYSYEFM-DYDDDYFPGGXXXXXXXXXXXXXXXXXXXXXXXXYGEEEEGRGSDMSPDWGDYTSWMEEEEGEEYCDLRTCCAEKEYGVWGLE 1233
             P EP++  CSSV+CP +THR +EGA+ K C+  D MAPTP PR+     ++ YEF  D  DDY  G                         YG  EEG G  +        +       EEYCDL TCC EKEYG+WGLE
Sbjct:  205 TPAEPDYDTCSSVQCPSETHRPIEGAEEKTCRTADLMAPTPAPRDGGGSYAFDYEFSSDEWDDYVAG-------------------YSYYFGYGTGEEG-GKALDXXXXXXGA-------EEYCDLSTCCEEKEYGLWGLE 318
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14239.3146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDW8_ECTSI6.290e-1740.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14239contigL-elsbetiae_contig14239:1127..3869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_003520.1
Exons5
Model size1433
Cds size1233
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.966569-UTR-L-elsbetiae_contig14239:1126..13231622815567.966569-UTR-L-elsbetiae_contig14239:1126..1323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 1127..1323 -
1691682964.4296288-UTR-L-elsbetiae_contig14239:1126..13231691682964.4296288-UTR-L-elsbetiae_contig14239:1126..1323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 1127..1323 -
1622815568.0487006-UTR-L-elsbetiae_contig14239:3866..38691622815568.0487006-UTR-L-elsbetiae_contig14239:3866..3869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 3867..3869 -
1691682964.5052-UTR-L-elsbetiae_contig14239:3866..38691691682964.5052-UTR-L-elsbetiae_contig14239:3866..3869Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14239 3867..3869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.9774876-CDS-L-elsbetiae_contig14239:1323..13461622815567.9774876-CDS-L-elsbetiae_contig14239:1323..1346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 1324..1346 -
1691682964.4405687-CDS-L-elsbetiae_contig14239:1323..13461691682964.4405687-CDS-L-elsbetiae_contig14239:1323..1346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 1324..1346 -
1622815567.996148-CDS-L-elsbetiae_contig14239:1621..20261622815567.996148-CDS-L-elsbetiae_contig14239:1621..2026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 1622..2026 -
1691682964.4507177-CDS-L-elsbetiae_contig14239:1621..20261691682964.4507177-CDS-L-elsbetiae_contig14239:1621..2026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 1622..2026 -
1622815568.0092566-CDS-L-elsbetiae_contig14239:2457..25841622815568.0092566-CDS-L-elsbetiae_contig14239:2457..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 2458..2584 -
1691682964.4663608-CDS-L-elsbetiae_contig14239:2457..25841691682964.4663608-CDS-L-elsbetiae_contig14239:2457..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 2458..2584 -
1622815568.0191112-CDS-L-elsbetiae_contig14239:2897..32951622815568.0191112-CDS-L-elsbetiae_contig14239:2897..3295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 2898..3295 -
1691682964.4824233-CDS-L-elsbetiae_contig14239:2897..32951691682964.4824233-CDS-L-elsbetiae_contig14239:2897..3295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 2898..3295 -
1622815568.0352378-CDS-L-elsbetiae_contig14239:3586..38661622815568.0352378-CDS-L-elsbetiae_contig14239:3586..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 3587..3866 -
1691682964.4927955-CDS-L-elsbetiae_contig14239:3586..38661691682964.4927955-CDS-L-elsbetiae_contig14239:3586..3866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14239 3587..3866 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14239.3146.1prot_L-elsbetiae_contig14239.3146.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14239 1324..3866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14239.3146.1

>prot_L-elsbetiae_contig14239.3146.1 ID=prot_L-elsbetiae_contig14239.3146.1|Name=mRNA_L-elsbetiae_contig14239.3146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=411bp
MGQQHKTPGLRGGSRRATSADRPVCNSIGCPDGYIPIDKAWETECHNGDC
RVEQCCEAMCACYGCPDNYTPNQDEADELCHGGVCTAEQCCETAAPTCNS
IGCPNGYTPIDKAWETECSNGDCRVEQCCQAMCACYGCPDNYVPIKDADI
VFCDDGRCTTEQCCDHHEGRREDPKRDEEDERCAGFSCPRNTEPREEVRH
DLCVGACGCTPEQCCEDNEGSRPERETPEDRSAFCKDFDCPPGYYIADGV
DYVECFAEECERDECCAKDREVPEEPEHAYCSSVRCPRQTHRLVEGADTK
RCKVVDFMAPTPPRNEDRYGSYSYEFMDYDDDYFPGGGGGGGGGGGRGGG
GRGGYSYDYGYYGEEEEGRGSDMSPDWGDYTSWMEEEEGEEYCDLRTCCA
EKEYGVWGLE*
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mRNA from alignment at L-elsbetiae_contig14239:1127..3869-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14239.3146.1 ID=mRNA_L-elsbetiae_contig14239.3146.1|Name=mRNA_L-elsbetiae_contig14239.3146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2743bp|location=Sequence derived from alignment at L-elsbetiae_contig14239:1127..3869- (Laminarionema elsbetiae ELsaHSoW15)
GACATGGGGCAGCAGCACAAGACCCCCGGTCTCCGTGGCGGCAGCAGGCG
TGCGACATCCGCCGACCGGCCCGTGTGCAACAGCATCGGATGCCCCGACG
GGTACATCCCCATCGACAAGGCCTGGGAGACGGAATGCCACAACGGCGAT
TGCCGTGTTGAGCAGTGCTGCGAGGCCATGTGCGCGTGTTACGGCTGTCC
AGACAATTACACCCCGAACCAGGACGAAGCCGACGAGCTCTGCCACGGCG
GCGTTTGTACCGCGGAACAGTGCTGCGAGACAGGTACGAATGATCTTGGA
GCACGGCTCAGCCTTCTTTTTCGCACTCTCGACGGCATCTGCGACAGTCA
TCTAAGGCGGTTCGCCGAAGAGCCACACATGGCCGAATGGTGTTGTTATT
TTTTACAATTGTATCTACATAGAATAGATAACAACAATAATCTATGCTTG
TATTTACATCTCAGCGATGATCCCAGCCACGATAAATCAAACCTAACCGT
ACGAGCCTTTCTCTCTCCCTCCTCCTGCGTACCCTTGCCCCCCCTGCCCC
CCCTGCCCGAACAACAAACCGTAGCGGCCCCCACGTGCAACTCGATCGGA
TGCCCCAACGGGTACACCCCCATCGACAAGGCCTGGGAGACGGAATGCTC
CAACGGCGATTGCCGTGTTGAGCAGTGCTGCCAGGCCATGTGCGCGTGCT
ACGGCTGCCCGGACAACTACGTCCCCATCAAGGACGCGGATATCGTGTTC
TGCGATGACGGCCGCTGCACCACCGAGCAGTGCTGCGACCACCACGAAGG
TCGCAGAGAGGACCCCAAGCGCGACGAAGAGGATGAGCGCTGCGCTGGCT
TTTCGTGCCCACGCAACACCGAGCCCCGCGAAGAGGTCCGACACGACCTG
TGTGTCGGCGCATGCGGCTGCACGCCCGAGCAATGCTGCGAGGACAACGA
AGGGTCCAGGCCTGAGCGCGAGGTATATACGCATGGTGAACCCCGTTTGG
CTCTTGGAGACTTTTTAGACCCCCGCACGCGCGAAAACAAAGAAACACGC
ATGCATGCTTGAGTTGAGTACTCGGAAACGCTTGGTTGGTCGCTTTTGGG
ACAAGCTTAAAAAAGAGTGCTATATGTGCAATCTCGTGCAAGCAAGTCTC
GGCCCTGGTTCCGTGCTTTCTTCTCCCCATGTTCTCGCGTGCCCACCACC
CACCGGTCGCTCGTGCGGTTCGGCCTCCTGTCCCTCCGTTCTCTTGTGCT
CGATCGACCACTCGTCTCGGCTAACTAACCCTCAGACGCCCGAGGACCGG
TCGGCTTTCTGCAAGGACTTCGACTGCCCGCCAGGTTACTACATCGCTGA
CGGCGTAGACTACGTAGAGTGCTTCGCCGAGGAGTGCGAGAGAGATGAAT
GCTGTGCCAAAGGTGAGTGAGGCCAGACAAAAGATGTGGCAAGGCGATTG
GTGGCATTGTCGGGGTCAGAGGTAGCAAGTACACTGGAGTACCAAACAAC
AACGCTGCTCGGCCCTTCCTTACTTTTTGTGTTTTCTGTTTTTTTCGCGT
GCGTGAGATGCGTGAGCCTCTCGCTCGGTTTTGGAAGAGGCAGTCGGAAG
ACACGGCTTTTGGTGGTTGATGTTTTCTCGTGTGATGGGTGTAGGGTGTG
GACGTGTGGACCCACCCCACATCTTTTTCTCTTCTTTCTCTCCGTCTTCG
CCCCCACGAGATCGACAAACCAAGCCATCGAATCGAATCGAATCGGCATC
GCACGCACCCGAGCCTGCCTTGCCCTCGTGTTGACCTGACGCCCAGCCGG
CTTTTCCCGACTCCCAACTAACTCAACGCAATCCGACGTGCAGACCGCGA
GGTTCCCGAGGAGCCCGAGCACGCCTACTGCTCCTCCGTACGGTGCCCCC
GCCAGACCCACCGCCTCGTCGAAGGCGCCGACACCAAGCGCTGCAAGGTC
GTCGACTTCATGGCGCCCACGCCCCCGCGCAACGAAGACCGCTACGGCTC
CTACAGCTACGAGTTCATGGACTACGACGACGATTACTTCCCGGGCGGCG
GTGGCGGTGGCGGGGGCGGTGGCGGACGCGGTGGAGGTGGCCGCGGCGGG
TACAGCTACGACTACGGGTACTACGGCGAGGAGGAGGAGGGCCGCGGGAG
CGACATGTCCCCTGACTGGGGAGACTACACCTCGTGGATGGAAGAGGAGG
AGGGGGAGGAGTACTGCGACCTCCGCACGTGCTGCGCCGAGAAAGAATGT
GAGAGTCGGAATCTGTGGCGAAACCGGTCTAGTCATATGTTTCGATCCAC
CAGAAAAGTTACTTTCGTTGGTTCAATCAAGACCCATACATATGTATCTG
GTCTCCTTTTCTGAAATAATACCGGAGAAATAGACTAGGCTTGTTGATGA
GTAGGAGGCACTACAACTAAATATTCACCTAGATACATATGCACACAATT
CGCTCATTTCCCCTCCCCCCATCTTCGGCATTTCTGCGTCCATCTTTCGC
GCCCGTGTGTGTCGTTGTCGCAGATGGCGTGTGGGGCCTCGAGTAAATAG
CAGGCGCACCGCACCCTTCACTTACGAGAGGAGGCCGAGTGCTCTCCCGC
ACCTTCCATCTTCTTGGGAGGGATAGAAAGTAAACGGCTCTCGGCGAAAG
CCTGACTAACGTGCCGTGTCGTGATGTCCCTTTGAGACAACCGACGCCTT
CGAGAGACTCTGTCACCGGCGCCTGTGGGGGGGGAGAGGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14239:1127..3869-

>mRNA_L-elsbetiae_contig14239.3146.1 ID=mRNA_L-elsbetiae_contig14239.3146.1|Name=mRNA_L-elsbetiae_contig14239.3146.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig14239:1127..3869- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCAGCAGCACAAGACCCCCGGTCTCCGTGGCGGCAGCAGGCGTGC
GACATCCGCCGACCGGCCCGTGTGCAACAGCATCGGATGCCCCGACGGGT
ACATCCCCATCGACAAGGCCTGGGAGACGGAATGCCACAACGGCGATTGC
CGTGTTGAGCAGTGCTGCGAGGCCATGTGCGCGTGTTACGGCTGTCCAGA
CAATTACACCCCGAACCAGGACGAAGCCGACGAGCTCTGCCACGGCGGCG
TTTGTACCGCGGAACAGTGCTGCGAGACAGATGGGGCAGCAGCACAAGAC
CCCCGGTCTCCGTGGCGGCAGCAGGCGTGCGACATCCGCCGACCGGCCCG
TGTGCAACAGCATCGGATGCCCCGACGGGTACATCCCCATCGACAAGGCC
TGGGAGACGGAATGCCACAACGGCGATTGCCGTGTTGAGCAGTGCTGCGA
GGCCATGTGCGCGTGTTACGGCTGTCCAGACAATTACACCCCGAACCAGG
ACGAAGCCGACGAGCTCTGCCACGGCGGCGTTTGTACCGCGGAACAGTGC
TGCGAGACAGCGGCCCCCACGTGCAACTCGATCGGATGCCCCAACGGGTA
CACCCCCATCGACAAGGCCTGGGAGACGGAATGCTCCAACGGCGATTGCC
GTGTTGAGCAGTGCTGCCAGGCCATGTGCGCGTGCTACGGCTGCCCGGAC
AACTACGTCCCCATCAAGGACGCGGATATCGTGTTCTGCGATGACGGCCG
CTGCACCACCGAGCAGTGCTGCGACCACCACGAAGGTCGCAGAGAGGACC
CCAAGCGCGACGAAGAGGATGAGCGCTGCGCTGGCTTTTCGTGCCCACGC
AACACCGAGCCCCGCGAAGAGGTCCGACACGACCTGTGTGTCGGCGCATG
CGGCTGCACGCCCGAGCAATGCTGCGAGGACAACGAAGGGTCCAGGCCTG
AGCGCGAGCGGCCCCCACGTGCAACTCGATCGGATGCCCCAACGGGTACA
CCCCCATCGACAAGGCCTGGGAGACGGAATGCTCCAACGGCGATTGCCGT
GTTGAGCAGTGCTGCCAGGCCATGTGCGCGTGCTACGGCTGCCCGGACAA
CTACGTCCCCATCAAGGACGCGGATATCGTGTTCTGCGATGACGGCCGCT
GCACCACCGAGCAGTGCTGCGACCACCACGAAGGTCGCAGAGAGGACCCC
AAGCGCGACGAAGAGGATGAGCGCTGCGCTGGCTTTTCGTGCCCACGCAA
CACCGAGCCCCGCGAAGAGGTCCGACACGACCTGTGTGTCGGCGCATGCG
GCTGCACGCCCGAGCAATGCTGCGAGGACAACGAAGGGTCCAGGCCTGAG
CGCGAGACGCCCGAGGACCGGTCGGCTTTCTGCAAGGACTTCGACTGCCC
GCCAGGTTACTACATCGCTGACGGCGTAGACTACGTAGAGTGCTTCGCCG
AGGAGTGCGAGAGAGATGAATGCTGTGCCAAAGACGCCCGAGGACCGGTC
GGCTTTCTGCAAGGACTTCGACTGCCCGCCAGGTTACTACATCGCTGACG
GCGTAGACTACGTAGAGTGCTTCGCCGAGGAGTGCGAGAGAGATGAATGC
TGTGCCAAAGACCGCGAGGTTCCCGAGGAGCCCGAGCACGCCTACTGCTC
CTCCGTACGGTGCCCCCGCCAGACCCACCGCCTCGTCGAAGGCGCCGACA
CCAAGCGCTGCAAGGTCGTCGACTTCATGGCGCCCACGCCCCCGCGCAAC
GAAGACCGCTACGGCTCCTACAGCTACGAGTTCATGGACTACGACGACGA
TTACTTCCCGGGCGGCGGTGGCGGTGGCGGGGGCGGTGGCGGACGCGGTG
GAGGTGGCCGCGGCGGGTACAGCTACGACTACGGGTACTACGGCGAGGAG
GAGGAGGGCCGCGGGAGCGACATGTCCCCTGACTGGGGAGACTACACCTC
GTGGATGGAAGAGGAGGAGGGGGAGGAGTACTGCGACCTCCGCACGTGCT
GCGCCGAGAAAGAATACCGCGAGGTTCCCGAGGAGCCCGAGCACGCCTAC
TGCTCCTCCGTACGGTGCCCCCGCCAGACCCACCGCCTCGTCGAAGGCGC
CGACACCAAGCGCTGCAAGGTCGTCGACTTCATGGCGCCCACGCCCCCGC
GCAACGAAGACCGCTACGGCTCCTACAGCTACGAGTTCATGGACTACGAC
GACGATTACTTCCCGGGCGGCGGTGGCGGTGGCGGGGGCGGTGGCGGACG
CGGTGGAGGTGGCCGCGGCGGGTACAGCTACGACTACGGGTACTACGGCG
AGGAGGAGGAGGGCCGCGGGAGCGACATGTCCCCTGACTGGGGAGACTAC
ACCTCGTGGATGGAAGAGGAGGAGGGGGAGGAGTACTGCGACCTCCGCAC
GTGCTGCGCCGAGAAAGAATATGGCGTGTGGGGCCTCGAGTAAATGGCGT
GTGGGGCCTCGAGTAA
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