mRNA_L-elsbetiae_contig14237.3143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14237.3143.1
Unique NamemRNA_L-elsbetiae_contig14237.3143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14237.3143.1 vs. uniprot
Match: A0A6H5JVW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW2_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.980e-6
Identity = 46/114 (40.35%), Postives = 57/114 (50.00%), Query Frame = 1 
Query: 1135 NARDQPGTLTLESGDDSTTATLASSFELQTSGDIILDTSGTGEITLTSASSIGLVAATFISLGSSPLLGWDVGTGPGSILAAAADTHTVIINNTVGSYLRTFSGDPGNGVTDTV 1476
            NA   PGTLTLESGD +TTATLAS F+L +SG I L                           +S L GWD+ T   + +     T T IIN+ VGSY R ++ +PG   TD V
Sbjct:  861 NAGANPGTLTLESGDGTTTATLASEFDLSSSGGIDLVXXXXXXXXXXXXXXXXXXXXXXXXXAASTLQGWDMAT---ATIDEPVGTQTAIINSIVGSYTRKWTANPGYPSTDIV 971
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14237.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVW2_9PHAE7.980e-640.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14237contigL-elsbetiae_contig14237:660..3633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2974
Cds size1587
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14237.3143.1prot_L-elsbetiae_contig14237.3143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14237 750..2336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8253598-UTR-L-elsbetiae_contig14237:659..7491622815567.8253598-UTR-L-elsbetiae_contig14237:659..749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14237 660..749 +
1691682964.347858-UTR-L-elsbetiae_contig14237:659..7491691682964.347858-UTR-L-elsbetiae_contig14237:659..749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14237 660..749 +
1622815567.8510377-UTR-L-elsbetiae_contig14237:2336..36331622815567.8510377-UTR-L-elsbetiae_contig14237:2336..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14237 2337..3633 +
1691682964.3667889-UTR-L-elsbetiae_contig14237:2336..36331691682964.3667889-UTR-L-elsbetiae_contig14237:2336..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14237 2337..3633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8377974-CDS-L-elsbetiae_contig14237:749..23361622815567.8377974-CDS-L-elsbetiae_contig14237:749..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14237 750..2336 +
1691682964.3575454-CDS-L-elsbetiae_contig14237:749..23361691682964.3575454-CDS-L-elsbetiae_contig14237:749..2336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14237 750..2336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14237.3143.1

>prot_L-elsbetiae_contig14237.3143.1 ID=prot_L-elsbetiae_contig14237.3143.1|Name=mRNA_L-elsbetiae_contig14237.3143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=529bp
MGGDVTIAGGTGSASGGGAVSISSGITANGATAAVVISSANAGTLFGTES
GLVSLSSGSSPNGNSGAIMIGSGAATNGAGGKLSLTVGSAGSAVGGDVDL
VAGSSDDSTGGAVSITSGSSTDGSTGTITILSPNAGTTGVSGAIVLSSGT
TSLGNSGTVLIGSGAASGGAGGAVSLTVGSGTTNPGGSLSIAAGASSAAT
GAGGSLSIDGGAGTGATTSAGGAVLITGGTGSTGTGGQLTFTSGTGAATS
SGDVVIESASAGAGPPGGVSGALTFRSGSSTSGNSGAVGIESGAASTGQA
GGLSLTVGTGDTGDGGAVIITAGDTSESAASNGGAINIKSGANTAGAVNA
RDQPGTLTLESGDDSTTATLASSFELQTSGDIILDTSGTGEITLTSASSI
GLVAATFISLGSSPLLGWDVGTGPGSILAAAADTHTVIINNTVGSYLRTF
SGDPGNGVTDTVTVTNSRIATGDNVMAMVTNACGNTQTMSVLSTDTSTAG
KVAIKVLVADECDDLSDYTVSFVVFKGI*
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mRNA from alignment at L-elsbetiae_contig14237:660..3633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14237.3143.1 ID=mRNA_L-elsbetiae_contig14237.3143.1|Name=mRNA_L-elsbetiae_contig14237.3143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2974bp|location=Sequence derived from alignment at L-elsbetiae_contig14237:660..3633+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGGAGGGGCCCTCAACGTGAAGGGCGGTGCCGCCGCCTCCGCCCAGGG
TGGAGCCTTGAGTGTCACCGGCGGGACTAGCACCGGGGATATGGGAGGCG
ACGTGACTATTGCCGGAGGAACCGGTTCCGCGTCCGGTGGCGGCGCGGTG
TCAATCAGCAGCGGCATCACGGCAAATGGCGCAACCGCTGCGGTCGTCAT
CTCGTCCGCAAACGCCGGAACCCTTTTCGGCACCGAGAGCGGACTCGTCT
CACTCAGCTCTGGTTCGAGCCCAAATGGTAACTCCGGTGCCATTATGATC
GGTAGCGGTGCGGCGACAAACGGGGCCGGTGGCAAGCTAAGTCTGACCGT
GGGCAGCGCCGGATCGGCAGTTGGAGGGGATGTTGACCTGGTGGCTGGGA
GCTCCGATGACAGCACCGGTGGCGCCGTGTCAATCACCAGCGGCTCCAGC
ACGGACGGTTCCACCGGAACGATCACGATCTTATCGCCGAACGCCGGGAC
CACCGGCGTGAGCGGTGCCATTGTGCTCAGCTCGGGTACCACCAGCTTAG
GCAACAGCGGCACGGTGCTCATCGGCAGTGGCGCGGCCTCTGGAGGAGCT
GGCGGGGCGGTGAGTCTTACCGTTGGTTCGGGCACAACCAACCCCGGCGG
TTCACTCTCAATCGCTGCAGGGGCATCGAGCGCGGCCACGGGAGCTGGTG
GGTCACTTTCTATTGACGGAGGGGCAGGGACAGGGGCTACTACCAGTGCT
GGCGGTGCCGTACTTATTACTGGTGGTACCGGTTCTACGGGCACCGGTGG
GCAACTTACCTTCACCTCGGGAACGGGCGCAGCAACCTCCAGCGGGGACG
TTGTAATAGAAAGTGCTAGCGCGGGTGCAGGTCCACCCGGTGGAGTAAGC
GGTGCTCTTACTTTCAGGTCGGGCTCGTCCACCTCCGGCAACAGTGGAGC
GGTTGGCATCGAATCCGGGGCCGCATCTACTGGACAGGCGGGGGGTCTGA
GTCTGACGGTTGGAACTGGCGATACTGGTGACGGTGGAGCGGTGATAATC
ACAGCGGGCGATACCTCTGAATCAGCGGCTTCCAATGGCGGAGCGATCAA
CATCAAAAGTGGAGCAAATACGGCAGGTGCCGTCAATGCCCGGGATCAGC
CAGGAACCCTGACCCTTGAGAGCGGAGACGATAGCACCACTGCCACCCTG
GCGTCATCTTTCGAACTCCAAACCAGCGGAGACATTATCCTCGACACATC
CGGCACGGGAGAAATCACTCTTACGTCTGCGAGCAGTATAGGTCTAGTGG
CGGCTACGTTTATTTCGCTGGGCAGTTCTCCTCTGCTAGGATGGGACGTG
GGGACCGGGCCAGGCTCGATACTTGCGGCAGCGGCTGACACTCACACAGT
CATTATTAACAACACCGTAGGGAGTTACTTGCGTACATTTTCCGGAGATC
CTGGAAATGGCGTCACCGACACGGTCACAGTGACCAATTCCCGTATTGCG
ACCGGCGACAATGTCATGGCGATGGTCACCAACGCGTGCGGGAATACGCA
GACGATGAGTGTGCTGTCAACGGATACAAGCACAGCAGGAAAAGTTGCAA
TAAAGGTGTTGGTAGCCGACGAGTGCGACGATTTAAGCGATTATACTGTT
TCGTTCGTGGTGTTCAAGGGGATATAGGGCGGTTGCTAGGGGCGGCGGGG
AAGGCCAATCGGGGCCCGTCAGTTGTTGATTTGAGCGTAATCAACAAGCG
ATATGCTGAGTTACTGTTGTTTGTGTATCTAGAGTATTTCCAGACCCCTT
TGTTTATTCAAGGAGGGAAGGGCGGACTCGTGGGTGATGTTGCTGTCAAC
GTTAATTTGAGATTTGAACGAAGCGTACCGTCAGCACCGTTCGCTCCATA
TCCAGGTCTACATGTAGATGCAGCACGAGTGTTTGGTTGTCGCAGTCGGT
GGTAAACGTGTTGAGTCCAGATGCTCGTGGTGTGCGCTCGGTGTGTGCTT
CATTTGAAGCAGCATCAACCGCCAGCTAGTTGACCTCAGAGAGCAAAAAT
GAAGTCGGTCGGTTCCTTTACAAGGGAGCTGTGTGTGTCTACTTTGTTTC
TTTTTTTTCATTCGGTGTGGACTCTTTCTTGACTATGTTGCGTCTATGTA
TGTATGTATCTATCTTATGTATGTACCACGTGCTATTTGTTGTGTGCGTG
CGGTGTGATTCTCGGCAAAGGCCGCTAATTAACGGGCTGCTGGCCATTTT
TATAACACGGAGGAGTAATCTATACATTAGGGGAGTCTATATTCATAGAT
AGATACTTCGAAGTAGATCTAAGTCTAGATAATATCGTATGCATCTAAAC
GCAACGAACCGAGCATCATCACTATCATCATCATCGGCTTTTTTCGCCAA
CCGGCATCAGCAGGGTGTTCCATTTTCTTTCTCGGTTATTTCGAGATCGG
GAAGGGGGGGCTGGGCGTCGATAGACGCGAAGGCTCATCATGGACGCACG
GAATGTCGCGGTTTGAGGCGACGGTAGAGGAAGGGGGAAGCTTGGGCGCA
AAACGAATGTGTGTTTCGGTTGAACATGTCGCAGATAGCCGGTAAAATCA
CGTACATACATGTAGCAGCGTGTGCTGCTACTCGAGGGGGGGGGGGGCTG
AACGAAGGAGGATCGATATTTTTCTGTGTTGGTGAGACTAGATTATTTAG
TACTACTCTAGATGTTTCTCTCGACGCCTGCGTGTGGGTACGCTCCATAG
ATCTACGTAGTACCCGCATGCTCGTGGGAGAGCTGACGAAGTGTAATGGT
GTCGGCACTACTGCAGTGGTGAATTAGTTGGGTACGGTGGCGCATCTCAG
GGGTGGAAGAGCCGGCCGAATTGCAACGAACGCAGGTTGGGCCACGGATG
GGGCGTATGGAAGGGTACGAATGCCGGGGGCTTTGCCCGCGGGTAAAGGG
GTGAAGGTGTCGTGATACACGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14237:660..3633+

>mRNA_L-elsbetiae_contig14237.3143.1 ID=mRNA_L-elsbetiae_contig14237.3143.1|Name=mRNA_L-elsbetiae_contig14237.3143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3174bp|location=Sequence derived from alignment at L-elsbetiae_contig14237:660..3633+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGGCGACGTGACTATTGCCGGAGGAACCGGTTCCGCGTCCGGTGG
CGGCGCGGTGTCAATCAGCAGCGGCATCACGGCAAATGGCGCAACCGCTG
CGGTCGTCATCTCGTCCGCAAACGCCGGAACCCTTTTCGGCACCGAGAGC
GGACTCGTCTCACTCAGCTCTGGTTCGAGCCCAAATGGTAACTCCGGTGC
CATTATGATCGGTAGCGGTGCGGCGACAAACGGGGCCGGTGGCAAGCTAA
GTCTGACCGTGGGCAGCGCCGGATCGGCAGTTGGAGGGGATGTTGACCTG
GTGGCTGGGAGCTCCGATGACAGCACCGGTGGCGCCGTGTCAATCACCAG
CGGCTCCAGCACGGACGGTTCCACCGGAACGATCACGATCTTATCGCCGA
ACGCCGGGACCACCGGCGTGAGCGGTGCCATTGTGCTCAGCTCGGGTACC
ACCAGCTTAGGCAACAGCGGCACGGTGCTCATCGGCAGTGGCGCGGCCTC
TGGAGGAGCTGGCGGGGCGGTGAGTCTTACCGTTGGTTCGGGCACAACCA
ACCCCGGCGGTTCACTCTCAATCGCTGCAGGGGCATCGAGCGCGGCCACG
GGAGCTGGTGGGTCACTTTCTATTGACGGAGGGGCAGGGACAGGGGCTAC
TACCAGTGCTGGCGGTGCCGTACTTATTACTGGTGGTACCGGTTCTACGG
GCACCGGTGGGCAACTTACCTTCACCTCGGGAACGGGCGCAGCAACCTCC
AGCGGGGACGTTGTAATAGAAAGTGCTAGCGCGGGTGCAGGTCCACCCGG
TGGAGTAAGCGGTGCTCTTACTTTCAGGTCGGGCTCGTCCACCTCCGGCA
ACAGTGGAGCGGTTGGCATCGAATCCGGGGCCGCATCTACTGGACAGGCG
GGGGGTCTGAGTCTGACGGTTGGAACTGGCGATACTGGTGACGGTGGAGC
GGTGATAATCACAGCGGGCGATACCTCTGAATCAGCGGCTTCCAATGGCG
GAGCGATCAACATCAAAAGTGGAGCAAATACGGCAGGTGCCGTCAATGCC
CGGGATCAGCCAGGAACCCTGACCCTTGAGAGCGGAGACGATAGCACCAC
TGCCACCCTGGCGTCATCTTTCGAACTCCAAACCAGCGGAGACATTATCC
TCGACACATCCGGCACGGGAGAAATCACTCTTACGTCTGCGAGCAGTATA
GGTCTAGTGGCGGCTACGTTTATTTCGCTGGGCAGTTCTCCTCTGCTAGG
ATGGGACGTGGGGACCGGGCCAGGCTCGATACTTGCGGCAGCGGCTGACA
CTCACACAGTCATTATTAACAACACCGTAGGGAGTTACTTGCGTACATTT
TCCGGAGATCCTGGAAATGGCGTCACCGACACGGTCACAGTGACCAATTC
CCGTATTGCGACCGGCGACAATGTCATGGCGATGGTCACCAACGCGTGCG
GGAATACGCAGACGATGAGTGTGCTGTCAACGGATACAAGCACAGCAGGA
AAAGTTGCAATAAAGGTGTTGGTAGCCGACGAGTGCGACGATTTAAGCGA
TTATACTGTTTCGTTCGTGGTGTTCAAGGGGATATAGATGGGAGGCGACG
TGACTATTGCCGGAGGAACCGGTTCCGCGTCCGGTGGCGGCGCGGTGTCA
ATCAGCAGCGGCATCACGGCAAATGGCGCAACCGCTGCGGTCGTCATCTC
GTCCGCAAACGCCGGAACCCTTTTCGGCACCGAGAGCGGACTCGTCTCAC
TCAGCTCTGGTTCGAGCCCAAATGGTAACTCCGGTGCCATTATGATCGGT
AGCGGTGCGGCGACAAACGGGGCCGGTGGCAAGCTAAGTCTGACCGTGGG
CAGCGCCGGATCGGCAGTTGGAGGGGATGTTGACCTGGTGGCTGGGAGCT
CCGATGACAGCACCGGTGGCGCCGTGTCAATCACCAGCGGCTCCAGCACG
GACGGTTCCACCGGAACGATCACGATCTTATCGCCGAACGCCGGGACCAC
CGGCGTGAGCGGTGCCATTGTGCTCAGCTCGGGTACCACCAGCTTAGGCA
ACAGCGGCACGGTGCTCATCGGCAGTGGCGCGGCCTCTGGAGGAGCTGGC
GGGGCGGTGAGTCTTACCGTTGGTTCGGGCACAACCAACCCCGGCGGTTC
ACTCTCAATCGCTGCAGGGGCATCGAGCGCGGCCACGGGAGCTGGTGGGT
CACTTTCTATTGACGGAGGGGCAGGGACAGGGGCTACTACCAGTGCTGGC
GGTGCCGTACTTATTACTGGTGGTACCGGTTCTACGGGCACCGGTGGGCA
ACTTACCTTCACCTCGGGAACGGGCGCAGCAACCTCCAGCGGGGACGTTG
TAATAGAAAGTGCTAGCGCGGGTGCAGGTCCACCCGGTGGAGTAAGCGGT
GCTCTTACTTTCAGGTCGGGCTCGTCCACCTCCGGCAACAGTGGAGCGGT
TGGCATCGAATCCGGGGCCGCATCTACTGGACAGGCGGGGGGTCTGAGTC
TGACGGTTGGAACTGGCGATACTGGTGACGGTGGAGCGGTGATAATCACA
GCGGGCGATACCTCTGAATCAGCGGCTTCCAATGGCGGAGCGATCAACAT
CAAAAGTGGAGCAAATACGGCAGGTGCCGTCAATGCCCGGGATCAGCCAG
GAACCCTGACCCTTGAGAGCGGAGACGATAGCACCACTGCCACCCTGGCG
TCATCTTTCGAACTCCAAACCAGCGGAGACATTATCCTCGACACATCCGG
CACGGGAGAAATCACTCTTACGTCTGCGAGCAGTATAGGTCTAGTGGCGG
CTACGTTTATTTCGCTGGGCAGTTCTCCTCTGCTAGGATGGGACGTGGGG
ACCGGGCCAGGCTCGATACTTGCGGCAGCGGCTGACACTCACACAGTCAT
TATTAACAACACCGTAGGGAGTTACTTGCGTACATTTTCCGGAGATCCTG
GAAATGGCGTCACCGACACGGTCACAGTGACCAATTCCCGTATTGCGACC
GGCGACAATGTCATGGCGATGGTCACCAACGCGTGCGGGAATACGCAGAC
GATGAGTGTGCTGTCAACGGATACAAGCACAGCAGGAAAAGTTGCAATAA
AGGTGTTGGTAGCCGACGAGTGCGACGATTTAAGCGATTATACTGTTTCG
TTCGTGGTGTTCAAGGGGATATAG
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