mRNA_L-elsbetiae_contig14224.3138.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14224.3138.1
Unique NamemRNA_L-elsbetiae_contig14224.3138.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.350e-39
Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:   13 GGPQVALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNE-GRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            G    AL  G +D+E GV+A+FELV E+AG++RTGQWVG CFL+T++ GRLSYY+GGE MTLCHL+HPMYMLGYLPKEDRVYLMDK + IYSY+V ++ LQYQ
Sbjct:  497 GAVAAALARGAVDAEEGVEAAFELVGEVAGRVRTGQWVGACFLYTSDAGRLSYYVGGEVMTLCHLDHPMYMLGYLPKEDRVYLMDKAKGIYSYKVLQSYLQYQ 599
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A4D9D3N3_9STRA (Coatomer_WDAD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.590e-33
Identity = 65/99 (65.66%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   25 VALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            VAL +G +  E GV+ SFEL+HE++ K+RTG WVGDCFL+TN   RL YY+GG+ MTLCHL+ P YMLGYL KE+RVYLMDKQ N+ SY+V  AMLQYQ
Sbjct:  516 VALAAGQVGEE-GVEESFELLHELSDKVRTGMWVGDCFLYTNNTQRLQYYVGGQIMTLCHLDSPKYMLGYLAKENRVYLMDKQLNVVSYKVLLAMLQYQ 613
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A7S2SR98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.470e-33
Identity = 59/98 (60.20%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTN-EGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            AL++  +  E GV+ SFEL+HE+A  ++TGQWVGDCFLFTN   RL+Y++GGE MTLCHL+H MYM+GYLPKEDRV+LMD  +N+ S+RV  ++L++Q
Sbjct:  524 ALETDAVSPEEGVEGSFELLHELADTVQTGQWVGDCFLFTNASNRLNYFVGGEIMTLCHLDHTMYMMGYLPKEDRVFLMDNARNVVSFRVLLSVLEFQ 621
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A7S2XXQ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.900e-32
Identity = 58/89 (65.17%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:   55 ETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            E GVD SF+L+HE++ K+RTG WVGDCFL+T  G RL+YY+GG+ MTL HL+HPMY+LGYLPKEDRVYL+DKQ N  S++V +++L+YQ
Sbjct:  509 EDGVDGSFDLLHEISDKVRTGYWVGDCFLYTTAGNRLNYYVGGKVMTLMHLDHPMYLLGYLPKEDRVYLVDKQTNFISFKVLQSVLEYQ 597
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A8K1CIQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ5_PYTOL)

HSP 1 Score: 127 bits (318), Expect = 8.990e-32
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            AL +G    E GVD SFEL+HE++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  +YMLGYLP+E+ V+LMDK +N+YSY V   ML+YQ
Sbjct:  502 ALATGAHTPEEGVDGSFELLHEISEKVGTGSWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKLYMLGYLPRENLVFLMDKMKNVYSYTVSLVMLEYQ 599
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A5D6Y875_9STRA (Coatomer subunit beta' n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y875_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.230e-31
Identity = 59/98 (60.20%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            A  +G   ++ GVD +FEL+HE+A ++ TG WVGDCFL+TN G RL+Y +GGE + L HLEH MYMLGYLP+E+ V+LMDK +N+YSY V RAML+YQ
Sbjct:  383 AFATGAHSADEGVDGAFELLHEVADRVGTGVWVGDCFLYTNAGGRLNYCVGGEVLPLAHLEHKMYMLGYLPRENLVFLMDKAKNVYSYTVSRAMLEYQ 480
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.660e-31
Identity = 57/98 (58.16%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNE-GRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            AL +GNI+ + GVD SFEL+     +  TGQWVG+CFL+TN  G+L+Y +GGE MTLCHL HPMY+LGY+PKEDR +L+DK  N++SY++  +ML YQ
Sbjct:  506 ALAAGNINPDEGVDGSFELLSTTNERAHTGQWVGECFLYTNSAGKLNYLVGGEVMTLCHLSHPMYLLGYVPKEDRAFLVDKTYNVHSYKLLLSMLSYQ 603
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: K3WFB2_GLOUD (Coatomer_WDAD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFB2_GLOUD)

HSP 1 Score: 124 bits (310), Expect = 1.080e-30
Identity = 59/98 (60.20%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            A  SG    + GVD +F+L+HE++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MYMLGYLP+E+ V+LMDK +N+YSY V   ML+YQ
Sbjct:  503 AFASGANSQDEGVDGAFDLLHEISEKVGTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEMKMYMLGYLPRENLVFLMDKMKNVYSYMVSLVMLEYQ 600
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A7S2DQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ04_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.690e-30
Identity = 54/98 (55.10%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            A++    ++E GV+ +FEL HE+A K+ TG+WVGDCF++TN   RL+Y++GGE MTLCHL+H MYMLGYL KEDRV+L+DK  N+ S++V + +L +Q
Sbjct:  417 AIEDDTFNAEEGVEGAFELTHELADKVATGEWVGDCFIYTNAASRLNYFVGGEIMTLCHLDHTMYMLGYLSKEDRVFLVDKALNVLSFKVLKPVLDFQ 514
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BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Match: A0A3R7J2Y3_9STRA (Coatomer subunit beta' n=31 Tax=Phytophthora TaxID=4783 RepID=A0A3R7J2Y3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 6.930e-30
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:   28 ALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTNEG-RLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRRAMLQYQ 318
            A  +G   +E GVD +F+L+HE++ K+ TG WVGDCFL+TN G RL+YY+GGE MTL HLE  MY+LGYLP+E+ V+LMDK +N+ SY V   ML+YQ
Sbjct:  504 AFAAGTNSAEEGVDGAFDLLHEISEKVGTGTWVGDCFLYTNAGGRLNYYVGGEVMTLAHLEQKMYLLGYLPRENLVFLMDKMKNVVSYTVSLVMLEYQ 601
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14224.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX4_9STRA1.350e-3968.93Coatomer WD associated region-domain-containing pr... [more]
A0A4D9D3N3_9STRA1.590e-3365.66Coatomer_WDAD domain-containing protein n=2 Tax=Mo... [more]
A0A7S2SR98_9STRA5.470e-3360.20Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2XXQ5_9STRA1.900e-3265.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CIQ5_PYTOL8.990e-3262.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y875_9STRA4.230e-3160.20Coatomer subunit beta' n=1 Tax=Pythium brassicum T... [more]
A0A7S3HJI1_9STRA4.660e-3158.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
K3WFB2_GLOUD1.080e-3060.20Coatomer_WDAD domain-containing protein n=1 Tax=Gl... [more]
A0A7S2DQ04_9STRA3.690e-3055.10Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A3R7J2Y3_9STRA6.930e-3058.16Coatomer subunit beta' n=31 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14224contigL-elsbetiae_contig14224:2584..3310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.1e-26
Seed eggNOG ortholog115417.EPrPW00000017473
KEGG koko:K17302
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.Coatomer subunit beta'. Source PGD
EggNOG OGs1MFE1@121069,KOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.399016-CDS-L-elsbetiae_contig14224:2583..27361622815567.399016-CDS-L-elsbetiae_contig14224:2583..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14224 2584..2736 +
1691682964.0698993-CDS-L-elsbetiae_contig14224:2583..27361691682964.0698993-CDS-L-elsbetiae_contig14224:2583..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14224 2584..2736 +
1622815567.414975-CDS-L-elsbetiae_contig14224:3145..33101622815567.414975-CDS-L-elsbetiae_contig14224:3145..3310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14224 3146..3310 +
1691682964.080475-CDS-L-elsbetiae_contig14224:3145..33101691682964.080475-CDS-L-elsbetiae_contig14224:3145..3310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14224 3146..3310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14224.3138.1prot_L-elsbetiae_contig14224.3138.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14224 2584..3310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14224.3138.1

>prot_L-elsbetiae_contig14224.3138.1 ID=prot_L-elsbetiae_contig14224.3138.1|Name=mRNA_L-elsbetiae_contig14224.3138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MLSCGGPQVALQSGNIDSETGVDASFELVHEMAGKIRTGQWVGDCFLFTN
EGRLSYYIGGETMTLCHLEHPMYMLGYLPKEDRVYLMDKQQNIYSYRVRR
AMLQYQ
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mRNA from alignment at L-elsbetiae_contig14224:2584..3310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14224.3138.1 ID=mRNA_L-elsbetiae_contig14224.3138.1|Name=mRNA_L-elsbetiae_contig14224.3138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=727bp|location=Sequence derived from alignment at L-elsbetiae_contig14224:2584..3310+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTCATGTGGTGGTCCCCAGGTGGCCCTTCAGAGCGGCAACATCGA
CAGCGAGACCGGGGTAGACGCGTCCTTCGAGCTGGTGCACGAGATGGCCG
GCAAGATCCGCACCGGCCAGTGGGTCGGCGACTGCTTCCTCTTCACCAAC
GAGGTGGGGTTGTTCGTTTGTTTATTTGTTTGTTTATTGTTTGTTTGTTT
GTTTATTTATTGTTTTTTTGTGTGTTTTTTGTTTTTTTGTTTGTTTTTTG
TTTGTTTTCTTCTTCTTCCGAAAGTTTCTAGTACCTAGACTTTTGAAGAA
ACAAAAAATGTGACTGCATAAAACTGCACGCAGCGAGAAGCTGGGGTTCA
TTCAGCATGCCCCCACCTAGGATACACTGTGCCCCCAAATTATTTACGTA
GCCGCCCCCCCCAAGGATCCGTCCGAGAGTATCTACACCAACAACGGTAC
CATGTGTACCGTACCTGACATCGAACGGATACATCTGACAACCAACAACC
AACGGTCCTATGTGATGTTACCGTACCTGACATCGACGCCGATGAATTTG
ACGACCCCGCAGGGGCGGCTGAGCTACTACATCGGCGGGGAGACCATGAC
CCTGTGCCACCTGGAGCACCCGATGTACATGCTGGGTTACCTGCCCAAGG
AGGACAGGGTGTACCTCATGGACAAGCAGCAGAACATCTACAGCTACCGA
GTGCGCCGGGCCATGCTGCAGTACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14224:2584..3310+

>mRNA_L-elsbetiae_contig14224.3138.1 ID=mRNA_L-elsbetiae_contig14224.3138.1|Name=mRNA_L-elsbetiae_contig14224.3138.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig14224:2584..3310+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGTCATGTGGTGGTCCCCAGGTGGCCCTTCAGAGCGGCAACATCGA
CAGCGAGACCGGGGTAGACGCGTCCTTCGAGCTGGTGCACGAGATGGCCG
GCAAGATCCGCACCGGCCAGTGGGTCGGCGACTGCTTCCTCTTCACCAAC
GAGATGTTGTCATGTGGTGGTCCCCAGGTGGCCCTTCAGAGCGGCAACAT
CGACAGCGAGACCGGGGTAGACGCGTCCTTCGAGCTGGTGCACGAGATGG
CCGGCAAGATCCGCACCGGCCAGTGGGTCGGCGACTGCTTCCTCTTCACC
AACGAGGGGCGGCTGAGCTACTACATCGGCGGGGAGACCATGACCCTGTG
CCACCTGGAGCACCCGATGTACATGCTGGGTTACCTGCCCAAGGAGGACA
GGGTGTACCTCATGGACAAGCAGCAGAACATCTACAGCTACCGAGTGCGC
CGGGCCATGCTGCAGTACCAGGGGCGGCTGAGCTACTACATCGGCGGGGA
GACCATGACCCTGTGCCACCTGGAGCACCCGATGTACATGCTGGGTTACC
TGCCCAAGGAGGACAGGGTGTACCTCATGGACAAGCAGCAGAACATCTAC
AGCTACCGAGTGCGCCGGGCCATGCTGCAGTACCAG
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