mRNA_L-elsbetiae_contig14217.3132.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14217.3132.1
Unique NamemRNA_L-elsbetiae_contig14217.3132.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14217.3132.1 vs. uniprot
Match: D7FKA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.010e-20
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 MLQEEWEPARRLVSVAAAGGARQTLARELIPAATEAGVFKVATRLIEDHDLVSEFPNYRELL 186
            ML+EEWEPARRLVS AAAG  RQTLAR LIPAAT+A  F+ A  LI+D+ LVSEFPNY  LL
Sbjct:    1 MLEEEWEPARRLVSTAAAGLPRQTLARALIPAATDAEAFETAVGLIQDNHLVSEFPNYETLL 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14217.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKA7_ECTSI2.010e-2072.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14217contigL-elsbetiae_contig14217:1490..1696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002330.1
Exons1
Model size207
Cds size207
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.6756814-CDS-L-elsbetiae_contig14217:1489..16961622815566.6756814-CDS-L-elsbetiae_contig14217:1489..1696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14217 1490..1696 +
1691682963.6170192-CDS-L-elsbetiae_contig14217:1489..16961691682963.6170192-CDS-L-elsbetiae_contig14217:1489..1696Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14217 1490..1696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14217.3132.1prot_L-elsbetiae_contig14217.3132.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14217 1490..1696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14217.3132.1

>prot_L-elsbetiae_contig14217.3132.1 ID=prot_L-elsbetiae_contig14217.3132.1|Name=mRNA_L-elsbetiae_contig14217.3132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
MLQEEWEPARRLVSVAAAGGARQTLARELIPAATEAGVFKVATRLIEDHD
LVSEFPNYRELLVCTPPA*
back to top

mRNA from alignment at L-elsbetiae_contig14217:1490..1696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14217.3132.1 ID=mRNA_L-elsbetiae_contig14217.3132.1|Name=mRNA_L-elsbetiae_contig14217.3132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig14217:1490..1696+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCAGGAGGAGTGGGAGCCGGCGCGGCGATTGGTGTCTGTGGCCGC
TGCGGGGGGGGCCCGACAGACCCTCGCCCGGGAGCTCATTCCGGCGGCGA
CTGAAGCTGGCGTTTTTAAGGTCGCGACGCGCCTGATCGAGGACCACGAC
CTGGTGTCGGAGTTCCCAAACTACCGAGAGCTACTGGTATGCACACCGCC
GGCATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14217:1490..1696+

>mRNA_L-elsbetiae_contig14217.3132.1 ID=mRNA_L-elsbetiae_contig14217.3132.1|Name=mRNA_L-elsbetiae_contig14217.3132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig14217:1490..1696+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCAGGAGGAGTGGGAGCCGGCGCGGCGATTGGTGTCTGTGGCCGC
TGCGGGGGGGGCCCGACAGACCCTCGCCCGGGAGCTCATTCCGGCGGCGA
CTGAAGCTGGCGTTTTTAAGGTCGCGACGCGCCTGATCGAGGACCACGAC
CTGGTGTCGGAGTTCCCAAACTACCGAGAGCTACTGGTATGCACACCGCC
GGCATGAATGCTGCAGGAGGAGTGGGAGCCGGCGCGGCGATTGGTGTCTG
TGGCCGCTGCGGGGGGGGCCCGACAGACCCTCGCCCGGGAGCTCATTCCG
GCGGCGACTGAAGCTGGCGTTTTTAAGGTCGCGACGCGCCTGATCGAGGA
CCACGACCTGGTGTCGGAGTTCCCAAACTACCGAGAGCTACTGGTATGCA
CACCGCCGGCATGA
back to top