mRNA_L-elsbetiae_contig14208.3130.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14208.3130.1
Unique NamemRNA_L-elsbetiae_contig14208.3130.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.120e-17
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 GSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQ 168
            GSSGDDTLKS+AA  D T +LAGYT G LGG NAG TD   VKL ADG V+WRWQ
Sbjct:  208 GSSGDDTLKSVAAAEDDTVVLAGYTEGSLGGDNAGETDCAVVKLDADGGVLWRWQ 262          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.580e-17
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    4 GSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQ 168
            GSSGDDTLKS+AA  D T +LAGYT G LGG NAG TD   VKL ADG V+WRWQ
Sbjct:  155 GSSGDDTLKSVAAAEDDTVVLAGYTDGSLGGVNAGETDCTVVKLDADGGVLWRWQ 209          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A518DIL0_9BACT (Beta-propeller repeat protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DIL0_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 7.490e-9
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 VGSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVW 159
            +G+ G+D  +SIA    G   +AGY+SG LGG NAGG+D    K SADGD+VW
Sbjct:  252 LGTPGNDEARSIATDGRGNAYVAGYSSGQLGGGNAGGSDAFLAKFSADGDLVW 304          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.430e-7
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    4 GSSGDDTLKSIAAVVDG-TYILAGYTSGDLGGPNAGGTDLVAVKLS-ADGDVVWRWQ 168
            GS G D +       +G + ++AGYTSG+  G NAG  D VA+KL+  DG  VWRWQ
Sbjct:  124 GSEGFDVIYGATLADEGESVVMAGYTSGNFSGVNAGSNDFVAIKLNFTDGSEVWRWQ 180          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.380e-6
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   34 IAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQ 168
            +AA+ DG+ +LAG T GD  G NAG  D   VKL+ +G + W WQ
Sbjct:  255 VAALSDGSVVLAGTTDGDYAGTNAGAQDFAVVKLTEEGVLDWTWQ 299          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A2P7TWH5_9SPHI (Uncharacterized protein n=1 Tax=Sphingobacteriales bacterium UPWRP_1 TaxID=2116516 RepID=A0A2P7TWH5_9SPHI)

HSP 1 Score: 49.7 bits (117), Expect = 1.890e-5
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 VGSSGDDTLKSIAAVVDGTYILAGYTSGDLGG--PNAGGTDLVAVKLSADGDVVWR 162
            +G SG+D  +S+ A+ DG +++AGY+    G    N G  DL  VKLSA GDV+W+
Sbjct:  138 LGGSGEDFFRSVIALPDGNFLVAGYSDSADGDFTENLGYKDLWLVKLSAAGDVLWK 193          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A7S6MF65_9BACT (SBBP repeat-containing protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7S6MF65_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 3.520e-5
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    4 GSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQV 171
            G+SGDD  +++A    G   +AG TSG+LGG NAG  D+   +  A G+ VW  Q+
Sbjct:  149 GTSGDDDARALAPDGAGGVFVAGDTSGNLGGQNAGNMDIWLARYDASGNRVWLRQI 204          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 3.530e-5
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1
Query:   34 IAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQ 168
            +AA+ DG+ +LAG T G+  G NAG  D   VKL+ +G + W WQ
Sbjct:  201 VAALSDGSVVLAGTTDGNYAGTNAGAQDFAVVKLTEEGVLDWTWQ 245          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A399Z0P9_9CHLR (Esterase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z0P9_9CHLR)

HSP 1 Score: 48.9 bits (115), Expect = 3.560e-5
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 1
Query:    4 GSSGDDTLKSIAAVVDGTYILAGYTSGDLGGP-NAGGTDLVAVKLSADGDVVWRWQ 168
            G+ G D    +        I+AGYT GDL G  +AGG D+V +KLS DGD++W  Q
Sbjct:  391 GTPGVDRPYGLVVTAQQDVIVAGYTQGDLAGSGSAGGDDIVVLKLSPDGDLLWITQ 446          
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Match: A0A518K6E5_9BACT (Beta-propeller repeat protein n=2 Tax=Botrimarina mediterranea TaxID=2528022 RepID=A0A518K6E5_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 6.620e-5
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = 1
Query:    1 VGSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGDVVWRWQV 171
            +G+   D  + ++A   G   L+GYTSG LGGPNAGG D    K  A G + W  Q+
Sbjct:  234 LGTVKHDRARGVSADGLGNVYLSGYTSGSLGGPNAGGGDAFVSKYDAAGTLQWTQQL 290          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14208.3130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FXY5_ECTSI1.120e-1770.91von Willebrand factor type D domain protein n=1 Ta... [more]
A0A6H5JF09_9PHAE1.580e-1770.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A518DIL0_9BACT7.490e-952.83Beta-propeller repeat protein n=1 Tax=Pirellulimon... [more]
D8LAU1_ECTSI4.430e-747.37PEGA domain family protein n=1 Tax=Ectocarpus sili... [more]
D7FIH5_ECTSI7.380e-648.89Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A2P7TWH5_9SPHI1.890e-544.64Uncharacterized protein n=1 Tax=Sphingobacteriales... [more]
A0A7S6MF65_9BACT3.520e-542.86SBBP repeat-containing protein n=1 Tax=Phycisphaer... [more]
D7FIH4_ECTSI3.530e-546.67Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A399Z0P9_9CHLR3.560e-544.64Esterase n=2 Tax=Chloroflexi bacterium TaxID=20267... [more]
A0A518K6E5_9BACT6.620e-542.11Beta-propeller repeat protein n=2 Tax=Botrimarina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14208contigL-elsbetiae_contig14208:4521..4691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.539487-CDS-L-elsbetiae_contig14208:4520..46911622815566.539487-CDS-L-elsbetiae_contig14208:4520..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14208 4521..4691 +
1691682963.52496-CDS-L-elsbetiae_contig14208:4520..46911691682963.52496-CDS-L-elsbetiae_contig14208:4520..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14208 4521..4691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14208.3130.1prot_L-elsbetiae_contig14208.3130.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14208 4521..4691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14208.3130.1

>prot_L-elsbetiae_contig14208.3130.1 ID=prot_L-elsbetiae_contig14208.3130.1|Name=mRNA_L-elsbetiae_contig14208.3130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
VGSSGDDTLKSIAAVVDGTYILAGYTSGDLGGPNAGGTDLVAVKLSADGD
VVWRWQV
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mRNA from alignment at L-elsbetiae_contig14208:4521..4691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14208.3130.1 ID=mRNA_L-elsbetiae_contig14208.3130.1|Name=mRNA_L-elsbetiae_contig14208.3130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=171bp|location=Sequence derived from alignment at L-elsbetiae_contig14208:4521..4691+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGGTCTAGCGGGGACGATACCCTCAAGAGCATTGCCGCGGTAGTCGA CGGCACCTACATCCTCGCGGGATACACGAGCGGGGACCTCGGAGGCCCCA ACGCCGGCGGGACGGACCTTGTCGCCGTAAAGCTCTCGGCCGACGGCGAT GTCGTTTGGCGCTGGCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14208:4521..4691+

>mRNA_L-elsbetiae_contig14208.3130.1 ID=mRNA_L-elsbetiae_contig14208.3130.1|Name=mRNA_L-elsbetiae_contig14208.3130.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig14208:4521..4691+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGGTCTAGCGGGGACGATACCCTCAAGAGCATTGCCGCGGTAGTCGA
CGGCACCTACATCCTCGCGGGATACACGAGCGGGGACCTCGGAGGCCCCA
ACGCCGGCGGGACGGACCTTGTCGCCGTAAAGCTCTCGGCCGACGGCGAT
GTCGTTTGGCGCTGGCAGGTGGTCGGGTCTAGCGGGGACGATACCCTCAA
GAGCATTGCCGCGGTAGTCGACGGCACCTACATCCTCGCGGGATACACGA
GCGGGGACCTCGGAGGCCCCAACGCCGGCGGGACGGACCTTGTCGCCGTA
AAGCTCTCGGCCGACGGCGATGTCGTTTGGCGCTGGCAGGTG
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