mRNA_L-elsbetiae_contig142.3120.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig142.3120.1
Unique NamemRNA_L-elsbetiae_contig142.3120.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig142.3120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig142contigL-elsbetiae_contig142:9809..11346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size860
Cds size846
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig142.3120.1prot_L-elsbetiae_contig142.3120.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig142 9809..11334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.4695432-CDS-L-elsbetiae_contig142:9808..98841622815565.4695432-CDS-L-elsbetiae_contig142:9808..9884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig142 9809..9884 -
1691682962.7918615-CDS-L-elsbetiae_contig142:9808..98841691682962.7918615-CDS-L-elsbetiae_contig142:9808..9884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig142 9809..9884 -
1622815565.481721-CDS-L-elsbetiae_contig142:10564..113341622815565.481721-CDS-L-elsbetiae_contig142:10564..11334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig142 10565..11334 -
1691682962.8038356-CDS-L-elsbetiae_contig142:10564..113341691682962.8038356-CDS-L-elsbetiae_contig142:10564..11334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig142 10565..11334 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.4980001-UTR-L-elsbetiae_contig142:11334..113461622815565.4980001-UTR-L-elsbetiae_contig142:11334..11346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig142 11335..11346 -
1691682962.8119352-UTR-L-elsbetiae_contig142:11334..113461691682962.8119352-UTR-L-elsbetiae_contig142:11334..11346Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig142 11335..11346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig142.3120.1

>prot_L-elsbetiae_contig142.3120.1 ID=prot_L-elsbetiae_contig142.3120.1|Name=mRNA_L-elsbetiae_contig142.3120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
MDAQNDGRDASTASSGAVAGRESTSPLPTAASDGSSGGGGGGGGGAQEMG
STPAGMVAGVAAEAATDGAAWLPRPNKRGREEEQQQQEESGAGAATPLAA
GAEKAAATGAGDPQGRPAAAPQQQSAPTLSGAASAGMDPSSSAAAAAAAA
AATTTAATTTTAPPSAPLNTFAGTGAGAAAAPAGAETTNASASVSSAQDG
TGASTAAGATSGSGVTPMNVEADDVDVGGGSNSGGDEGRASTTPVGRLPG
ISLGRAPSDSSPPTASIAHGFPSNGHIIPPSA
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mRNA from alignment at L-elsbetiae_contig142:9809..11346-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig142.3120.1 ID=mRNA_L-elsbetiae_contig142.3120.1|Name=mRNA_L-elsbetiae_contig142.3120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1538bp|location=Sequence derived from alignment at L-elsbetiae_contig142:9809..11346- (Laminarionema elsbetiae ELsaHSoW15)
CCCACCGGCGTCATGGATGCGCAGAACGACGGAAGAGATGCTTCGACTGC
GTCCTCGGGTGCAGTCGCCGGACGCGAGAGCACGTCACCGCTGCCGACCG
CCGCTAGCGATGGCAGTAGCGGCGGCGGCGGCGGCGGCGGTGGCGGTGCA
CAGGAGATGGGATCGACCCCCGCAGGGATGGTGGCAGGCGTCGCCGCGGA
GGCTGCGACCGATGGAGCAGCGTGGTTGCCGAGGCCAAACAAGCGCGGCC
GGGAGGAAGAGCAGCAACAGCAGGAGGAATCTGGCGCTGGTGCGGCTACG
CCTCTTGCGGCTGGTGCTGAAAAAGCAGCAGCCACCGGGGCTGGAGATCC
CCAGGGGCGGCCCGCGGCAGCGCCGCAACAGCAGTCGGCTCCTACCCTTT
CTGGCGCTGCTTCTGCTGGAATGGACCCATCATCATCAGCGGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAACAACAACAACAGCTCC
GCCGTCAGCCCCGTTGAACACGTTCGCCGGTACTGGTGCCGGTGCCGCCG
CGGCGCCCGCAGGAGCAGAAACAACAAACGCATCGGCATCAGTATCATCA
GCTCAAGACGGCACAGGGGCTTCCACTGCTGCCGGAGCCACGAGCGGCAG
TGGGGTAACGCCCATGAACGTGGAGGCGGATGACGTCGACGTTGGCGGCG
GGAGCAACAGCGGCGGCGACGAGGGGCGGGCCAGCACCACCCCAGTCGGG
AGGCTGCCTGGGATTTCGCTGGGGCGCGCCCCGTGAGTGGAAACAACAAG
TTGTTATTTTGTTGCTTTTTCAGTATTTTTACCTGTCTGATTTCGGCCTG
TTTCGCCTCAGGATTGGTGTGTACCCGCTCTCCTGCGCCACCCCCCCCAC
CCCCCCCCATTCTACAACCCCCCCTCGTGCCGTGCACGCTGGCTGCGGTG
GAAAAATGACCTTCTGGGCCGTTTCTAGCGTTCTTGTCAGAAGAGCGACG
CCGACGCTGCTCAAACCCTGCACGCTATCGTCTGCCGAGCGAAATTCCAA
CCTCCTCCTTGCGAACTTTGATGTTAGTTAGGCCCCCACGCAATGGTAGG
AATGAAAACCTGGTTAAAAAAAAAACATCACGTTCCGTTGCGTGGTTCCG
CATCCCGATCTTGTGAGGTTGCTTGCGCATTTGTCTGTCTCCAGACTTGA
GGTTTCAATGGTACGTATTTGCTGCCCGAATCGCAATAAATACGCGAGTT
CCAGTGTTTATATATTTTTTCCATAAATATATATATATGCACATGAAGCA
AGGCTCAACAATTGATGCCCGGAGACACTTTTTGCGGTGTTTCTCCGCTC
TGCTTGTGCGGAACTTGATGTGTATACTGTTCCCGATCTCAAAATTTGGT
CCACACGCCTTTTTTGTTTTTGCGTTTTGTATTCGTTCGCCTACCTTTTT
TCTTTTTCGCAGGTCGGACTCCTCCCCCCCCACCGCTAGCATCGCCCACG
GGTTCCCCTCCAACGGCCACATCATCCCTCCTTCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig142:9809..11346-

>mRNA_L-elsbetiae_contig142.3120.1 ID=mRNA_L-elsbetiae_contig142.3120.1|Name=mRNA_L-elsbetiae_contig142.3120.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig142:9809..11346- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGCGCAGAACGACGGAAGAGATGCTTCGACTGCGTCCTCGGGTGC
AGTCGCCGGACGCGAGAGCACGTCACCGCTGCCGACCGCCGCTAGCGATG
GCAGTAGCGGCGGCGGCGGCGGCGGCGGTGGCGGTGCACAGGAGATGGGA
TCGACCCCCGCAGGGATGGTGGCAGGCGTCGCCGCGGAGGCTGCGACCGA
TGGAGCAGCGTGGTTGCCGAGGCCAAACAAGCGCGGCCGGGAGGAAGAGC
AGCAACAGCAGGAGGAATCTGGCGCTGGTGCGGCTACGCCTCTTGCGGCT
GGTGCTGAAAAAGCAGCAGCCACCGGGGCTGGAGATCCCCAGGGGCGGCC
CGCGGCAGCGCCGCAACAGCAGTCGGCTCCTACCCTTTCTGGCGCTGCTT
CTGCTGGAATGGACCCATCATCATCAGCGGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAACAACAGCAGCAACAACAACAACAGCTCCGCCGTCAGCCCC
GTTGAACACGTTCGCCGGTACTGGTGCCGGTGCCGCCGCGGCGCCCGCAG
GAGCAGAAACAACAAACGCATCGGCATCAGTATCATCAGCTCAAGACGGC
ACAGGGGCTTCCACTGCTGCCGGAGCCACGAGCGGCAGTGGGGTAACGCC
CATGAACGTGGAGGCGGATGACGTCGACGTTGGCGGCGGGAGCAACAGCG
GCGGCGACGAGGGGCGGGCCAGCACCACCCCAGTCGGGAGGCTGCCTGGG
ATTTCGCTGGGGCGCGCCCCATGGATGCGCAGAACGACGGAAGAGATGCT
TCGACTGCGTCCTCGGGTGCAGTCGCCGGACGCGAGAGCACGTCACCGCT
GCCGACCGCCGCTAGCGATGGCAGTAGCGGCGGCGGCGGCGGCGGCGGTG
GCGGTGCACAGGAGATGGGATCGACCCCCGCAGGGATGGTGGCAGGCGTC
GCCGCGGAGGCTGCGACCGATGGAGCAGCGTGGTTGCCGAGGCCAAACAA
GCGCGGCCGGGAGGAAGAGCAGCAACAGCAGGAGGAATCTGGCGCTGGTG
CGGCTACGCCTCTTGCGGCTGGTGCTGAAAAAGCAGCAGCCACCGGGGCT
GGAGATCCCCAGGGGCGGCCCGCGGCAGCGCCGCAACAGCAGTCGGCTCC
TACCCTTTCTGGCGCTGCTTCTGCTGGAATGGACCCATCATCATCAGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAACAACAACA
ACAGCTCCGCCGTCAGCCCCGTTGAACACGTTCGCCGGTACTGGTGCCGG
TGCCGCCGCGGCGCCCGCAGGAGCAGAAACAACAAACGCATCGGCATCAG
TATCATCAGCTCAAGACGGCACAGGGGCTTCCACTGCTGCCGGAGCCACG
AGCGGCAGTGGGGTAACGCCCATGAACGTGGAGGCGGATGACGTCGACGT
TGGCGGCGGGAGCAACAGCGGCGGCGACGAGGGGCGGGCCAGCACCACCC
CAGTCGGGAGGCTGCCTGGGATTTCGCTGGGGCGCGCCCCGTCGGACTCC
TCCCCCCCCACCGCTAGCATCGCCCACGGGTTCCCCTCCAACGGCCACAT
CATCCCTCCTTCCGCGGTCGGACTCCTCCCCCCCCACCGCTAGCATCGCC
CACGGGTTCCCCTCCAACGGCCACATCATCCCTCCTTCCGCG
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