mRNA_L-elsbetiae_contig14198.3119.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14198.3119.1
Unique NamemRNA_L-elsbetiae_contig14198.3119.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14198.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14198contigL-elsbetiae_contig14198:1066..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size827
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.4259083-CDS-L-elsbetiae_contig14198:1065..15241622815565.4259083-CDS-L-elsbetiae_contig14198:1065..1524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14198 1066..1524 +
1691682962.7722719-CDS-L-elsbetiae_contig14198:1065..15241691682962.7722719-CDS-L-elsbetiae_contig14198:1065..1524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14198 1066..1524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.436975-UTR-L-elsbetiae_contig14198:1524..18911622815565.436975-UTR-L-elsbetiae_contig14198:1524..1891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14198 1525..1891 +
1691682962.7822626-UTR-L-elsbetiae_contig14198:1524..18911691682962.7822626-UTR-L-elsbetiae_contig14198:1524..1891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14198 1525..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14198.3119.1prot_L-elsbetiae_contig14198.3119.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14198 1066..1524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14198.3119.1

>prot_L-elsbetiae_contig14198.3119.1 ID=prot_L-elsbetiae_contig14198.3119.1|Name=mRNA_L-elsbetiae_contig14198.3119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
AWKIRRASSHLRGCFPLRQLFGSGLIYSRREKAGKILHPSDEPRVSSDTI
IHPPTTAGDTICRIILLVAGRVSTLLSNVATPTQPATVVAFWPVREPKVP
RGSAGVFVKKKNTRPVTSQSEERPTSGHSLPVRPANRVGAPTMAGRAANL
RN*
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mRNA from alignment at L-elsbetiae_contig14198:1066..1891+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14198.3119.1 ID=mRNA_L-elsbetiae_contig14198.3119.1|Name=mRNA_L-elsbetiae_contig14198.3119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=826bp|location=Sequence derived from alignment at L-elsbetiae_contig14198:1066..1891+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTGGAAGATCCGCCGAGCGTCTTCCCATCTTCGCGGGTGTTTCCCACT
CAGACAGTTGTTTGGGTCTGGCTTAATTTACAGCAGGAGAGAGAAGGCAG
GTAAGATTCTTCATCCATCGGATGAACCTCGAGTAAGCTCTGATACAATA
ATACACCCCCCAACAACGGCTGGAGACACTATTTGCAGGATAATACTTCT
CGTTGCAGGGCGTGTTAGCACACTCTTGTCCAACGTAGCCACACCGACCC
AGCCCGCAACCGTCGTGGCCTTTTGGCCGGTCCGAGAGCCTAAAGTGCCT
CGCGGCTCGGCAGGCGTGTTCGTGAAAAAAAAAAACACGCGGCCGGTTAC
TAGCCAATCAGAGGAACGTCCTACTTCAGGACATTCGTTGCCGGTGCGTC
CCGCAAATAGGGTCGGTGCCCCAACAATGGCCGGCAGGGCAGCAAATCTC
CGCAACTAGTGCGATATCACGGCACCCCCCCCCCCTTTTATCACACACAA
CCCCACGGATGTAGGGAGGGCTCTGGTGGCCTCCTACACTACACCGCCCG
GGTTGTCAACGGATGTAAAAAACCCGTCCAAAATATAAGTAGCACACCGG
GTGATGGTGCATTTCTAAACGCCCAAACGTATTCAACGCGGGGTGTGTGA
TGCATTGTGTCATCTACGGCAGCTCAGCTCTCCTCGACGGCAGCACAAGT
TTACCTATGTAGGCTGTTTACGGTGGGGTTCCGCTTGAACATGGTCGGAA
ATGCTGTGGGGAACGGAAAGAAGCCCGCAAGTTTCACAAGAGATATCGCC
GCGCGTGATATTTAGTGATAAACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14198:1066..1891+

>mRNA_L-elsbetiae_contig14198.3119.1 ID=mRNA_L-elsbetiae_contig14198.3119.1|Name=mRNA_L-elsbetiae_contig14198.3119.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig14198:1066..1891+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTGGAAGATCCGCCGAGCGTCTTCCCATCTTCGCGGGTGTTTCCCACT
CAGACAGTTGTTTGGGTCTGGCTTAATTTACAGCAGGAGAGAGAAGGCAG
GTAAGATTCTTCATCCATCGGATGAACCTCGAGTAAGCTCTGATACAATA
ATACACCCCCCAACAACGGCTGGAGACACTATTTGCAGGATAATACTTCT
CGTTGCAGGGCGTGTTAGCACACTCTTGTCCAACGTAGCCACACCGACCC
AGCCCGCAACCGTCGTGGCCTTTTGGCCGGTCCGAGAGCCTAAAGTGCCT
CGCGGCTCGGCAGGCGTGTTCGTGAAAAAAAAAAACACGCGGCCGGTTAC
TAGCCAATCAGAGGAACGTCCTACTTCAGGACATTCGTTGCCGGTGCGTC
CCGCAAATAGGGTCGGTGCCCCAACAATGGCCGGCAGGGCAGCAAATCTC
CGCAACTAGGCTTGGAAGATCCGCCGAGCGTCTTCCCATCTTCGCGGGTG
TTTCCCACTCAGACAGTTGTTTGGGTCTGGCTTAATTTACAGCAGGAGAG
AGAAGGCAGGTAAGATTCTTCATCCATCGGATGAACCTCGAGTAAGCTCT
GATACAATAATACACCCCCCAACAACGGCTGGAGACACTATTTGCAGGAT
AATACTTCTCGTTGCAGGGCGTGTTAGCACACTCTTGTCCAACGTAGCCA
CACCGACCCAGCCCGCAACCGTCGTGGCCTTTTGGCCGGTCCGAGAGCCT
AAAGTGCCTCGCGGCTCGGCAGGCGTGTTCGTGAAAAAAAAAAACACGCG
GCCGGTTACTAGCCAATCAGAGGAACGTCCTACTTCAGGACATTCGTTGC
CGGTGCGTCCCGCAAATAGGGTCGGTGCCCCAACAATGGCCGGCAGGGCA
GCAAATCTCCGCAACTAG
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