mRNA_L-elsbetiae_contig1419.3114.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1419.3114.1
Unique NamemRNA_L-elsbetiae_contig1419.3114.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.020e-48
Identity = 86/159 (54.09%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:    1 MEDRDGPCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLNGK-KIYNLPCGDLCGEPA--PSLLAPAEDYVGCFHD 468
             E RDGPC   +R+ F FPI+EYCHPDY SDD  E D+   VDICG R ++G +VIGG+VYRG   AD+LYGAYVF D  +  +YYI +D NGVW  GTIISD S+ V+ FAED +GELM+++    IY LPCGD+C       S   P  + +GCF D
Sbjct:  366 QESRDGPCLDTDRSAFTFPIYEYCHPDYSSDDADEADFVAGVDICGTRMVSGTAVIGGYVYRGTYFADVLYGAYVFGDNTSNNIYYIVQD-NGVWSVGTIISDSSVSVIGFAEDNNGELMVIDQDYNIYQLPCGDMCASTCLDQSDQQPTYESLGCFVD 523
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 6.950e-41
Identity = 72/144 (50.00%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:   19 PCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLNGK-KIYNLPCGDLCGEPAPSLLAPAED 447
            PC G +R+GF +P+FEYCHPDY S D  E ++T   D CG+R + G  VIGG+VYRG   +DLL GAY+F D   R +Y+++++  G W  GTIISD S+++V+FAED +GE+M+L+ + ++Y++PCGDLC   A + L  AED
Sbjct:  314 PCDGVDRSGFTYPLFEYCHPDYDSTDADEQEFTGGADTCGDRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLREEEAG-WAVGTIISDASVQIVSFAEDVNGEIMMLDYQHRMYHMPCGDLC---ATTCLEQAED 453
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 4.650e-40
Identity = 74/156 (47.44%), Postives = 105/156 (67.31%), Query Frame = 1 
Query:   19 PCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLN-GKKIYNLPCGDLCGEPAPSLLAPAEDY-----VGCFHD 468
            PC G +R+ F +P+FEYCHPD+ S D  E ++T   D CGNR + G  VIGG+VYRG   +DLL GAY+F D   R +Y++K++ +G W  GTI+SD S+++++FAED +GE++LL+    IY++PCGDLC     + L  AED      +GCF D
Sbjct:  355 PCDGVDRSDFTYPLFEYCHPDFDSTDADEQEFTGGADTCGNRFVVGNCVIGGYVYRGNFFSDLLDGAYIFGDSTMRNIYFLKEEEDG-WAVGTIVSDASVQIISFAEDVNGEIVLLDYNHDIYHMPCGDLC---VTTCLDQAEDQPAYESLGCFAD 506
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 5.900e-39
Identity = 73/152 (48.03%), Postives = 102/152 (67.11%), Query Frame = 1 
Query:   22 CRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLNGK-KIYNLPCGDLCGEPAPSLLA--PAEDYVGCFHD 468
            C G +R+GF FP++EYCHPDY S  D E  +T   DICG+R + G +VIGG+VYRG   +DLL GAY+F D   + +YY+ ++  G W  GTIISD S+++++F+ED +GE++LL+ +  IY++PCGDLC           P  D VGCF D
Sbjct:  438 CDGISRSGFTFPLYEYCHPDYQSTGDDE--FTAGNDICGDRVLLGNAVIGGYVYRGNYFSDLLNGAYIFGDSTMKNIYYLVEEDGG-WSLGTIISDASVQIISFSEDINGEIVLLDLQHNIYHMPCGDLCATTCLDQTEDQPTYDSVGCFAD 586
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.360e-31
Identity = 58/110 (52.73%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:   19 PCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDAD 348
            PC G +R+GF FP++EYCHPDY S  D E  +T  VDICG+R + G +VIGG+VYRG   +DLLYG Y+F D   + ++Y+ K+G+G W  GTIISD S+++++FAED +
Sbjct:  374 PCDGVDRSGFTFPLYEYCHPDYSSVGDDE--FTAGVDICGDRVLLGNAVIGGYVYRGNFFSDLLYGHYIFGDSTMKNIFYLVKEGDG-WSLGTIISDASVQIISFAEDVN 480
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.090e-29
Identity = 71/164 (43.29%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:   16 GPCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLNGK-KIYNLPCGDLC--GEP---APSLLAPAEDY------VGCFHDG 471
            G C G +RA + FP+FEYCH DY S  +       + D CG+R +TG SVIGG VYRGAK  D+L G Y+FAD +   ++++     G W +GT++S    ++  FAE  DGEL ++  +  IY+LPCGDLC  GE    A S   P  D       +GCF DG
Sbjct:  445 GECSGLDRADYAFPVFEYCHVDYDSSQE-------EFDACGDRTVTGLSVIGGHVYRGAKYDDILGGHYIFADHSVGSLHHLAPAAGGGWTAGTVLSSIP-KIGGFAEGNDGELYMVGYQGNIYDLPCGDLCESGEEQKEASSACLPQSDTTPTFEEIGCFLDG 600
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: A0A835YRR0_9STRA (Sorbosone dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.070e-13
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:   55 PIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSI---RVVAFAEDADGELMLLNGKKIYNLP 393
            P+++YCH DY  +  + G        C N+++ G+SV GGFVYRGA LA  L  AY+FAD+ +R +  I+ D      +  I++D +    ++  FAEDADGEL+L++    YN P
Sbjct:  335 PVYQYCHADYQLEP-KPGQAAYARAACKNQKVMGRSVTGGFVYRGAALAAELGSAYIFADYEDRVLAAIRYDDATATWTEQILADGTNGLGQISTFAEDADGELLLVS----YNPP 445
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: A0A836CM86_9STRA (Sorbosone dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM86_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.480e-12
Identity = 39/119 (32.77%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:   46 FEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLL---NGKKIYNLP 393
            ++ P++ YCH           D   D   C  +  TG+SV GGF YRG + AD   G Y+FAD+    V  + KD +G W+   ++      + + AED++GE+ +L   +G  +Y LP
Sbjct:  439 YQHPLYMYCH-----------DGVEDSQ-CQGKPFTGESVTGGFRYRGTQQADQYGGQYIFADYQQGRVLRLYKDDSGAWQGSEVVQSTGWTIPSLAEDSNGEIYILRYGDGANVYALP 545
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: A0A835Z9U7_9STRA (Sorbosone dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9U7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.430e-11
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:   25 RGANRA--GFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREMTGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLL---NGKKIYNLP 393
            +GAN     +E   F+YCH          G +      C  +  TG  VIGG+VYRG+K AD+  G Y+FAD+    +  + + G+G W+S  I+      + + A+D++GEL ++   NG  +Y LP
Sbjct:  397 QGANHGWRNYEGTRFQYCHSGV------SGPW------CDGKPFTGDCVIGGYVYRGSKYADVYGGNYIFADYQQGRIVRMYRQGDG-WQSEVIVQSTGWLISSLAQDSNGELYIIRYGNGGNVYELP 511
[Close]
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 9.080e-11
Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:  250 VYYIKKDGNGVWKSGTIISDRSIRVVAFAEDADGELMLLNGK-KIYNLPCGDLCGEPAPSLLAPAEDY-----VGCFHD 468
            +Y+++++ +G W  GTIISD S+++V+FAED +GE+MLL+ +  +Y++PCGDLC   A + L  AED      +GC+ D
Sbjct:  365 IYFLREEEDG-WAVGTIISDASVQIVSFAEDVNGEIMLLDYQHNMYHMPCGDLC---ATTCLDQAEDQPTYESLGCYAD 439
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1419.3114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6T7_ECTSI1.020e-4854.09WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KT40_9PHAE6.950e-4150.00GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G961_ECTSI4.650e-4047.44Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G4P3_ECTSI5.900e-3948.03Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE2.360e-3152.73GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJP1_ECTSI1.090e-2943.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRR0_9STRA6.070e-1339.66Sorbosone dehydrogenase-domain-containing protein ... [more]
A0A836CM86_9STRA7.480e-1232.77Sorbosone dehydrogenase-domain-containing protein ... [more]
A0A835Z9U7_9STRA1.430e-1133.59Sorbosone dehydrogenase-domain-containing protein ... [more]
D7G957_ECTSI9.080e-1144.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1419contigL-elsbetiae_contig1419:20994..24129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue4.7e-42
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size477
Cds size477
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1419.3114.1prot_L-elsbetiae_contig1419.3114.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1419 20994..24129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815565.0588386-CDS-L-elsbetiae_contig1419:20993..210991622815565.0588386-CDS-L-elsbetiae_contig1419:20993..21099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 20994..21099 -
1691682962.5371463-CDS-L-elsbetiae_contig1419:20993..210991691682962.5371463-CDS-L-elsbetiae_contig1419:20993..21099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 20994..21099 -
1622815565.0726936-CDS-L-elsbetiae_contig1419:21572..215951622815565.0726936-CDS-L-elsbetiae_contig1419:21572..21595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 21573..21595 -
1691682962.5504658-CDS-L-elsbetiae_contig1419:21572..215951691682962.5504658-CDS-L-elsbetiae_contig1419:21572..21595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 21573..21595 -
1622815565.085986-CDS-L-elsbetiae_contig1419:22463..225661622815565.085986-CDS-L-elsbetiae_contig1419:22463..22566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 22464..22566 -
1691682962.5606592-CDS-L-elsbetiae_contig1419:22463..225661691682962.5606592-CDS-L-elsbetiae_contig1419:22463..22566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 22464..22566 -
1622815565.0990376-CDS-L-elsbetiae_contig1419:22830..229061622815565.0990376-CDS-L-elsbetiae_contig1419:22830..22906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 22831..22906 -
1691682962.570845-CDS-L-elsbetiae_contig1419:22830..229061691682962.570845-CDS-L-elsbetiae_contig1419:22830..22906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 22831..22906 -
1622815565.111677-CDS-L-elsbetiae_contig1419:23204..233071622815565.111677-CDS-L-elsbetiae_contig1419:23204..23307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 23205..23307 -
1691682962.5835567-CDS-L-elsbetiae_contig1419:23204..233071691682962.5835567-CDS-L-elsbetiae_contig1419:23204..23307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 23205..23307 -
1622815565.1238852-CDS-L-elsbetiae_contig1419:24063..241291622815565.1238852-CDS-L-elsbetiae_contig1419:24063..24129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 24064..24129 -
1691682962.6046867-CDS-L-elsbetiae_contig1419:24063..241291691682962.6046867-CDS-L-elsbetiae_contig1419:24063..24129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 24064..24129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1419.3114.1

>prot_L-elsbetiae_contig1419.3114.1 ID=prot_L-elsbetiae_contig1419.3114.1|Name=mRNA_L-elsbetiae_contig1419.3114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MEDRDGPCRGANRAGFEFPIFEYCHPDYHSDDDREGDYTNDVDICGNREM
TGQSVIGGFVYRGAKLADLLYGAYVFADWNNRGVYYIKKDGNGVWKSGTI
ISDRSIRVVAFAEDADGELMLLNGKKIYNLPCGDLCGEPAPSLLAPAEDY
VGCFHDGRR
back to top

mRNA from alignment at L-elsbetiae_contig1419:20994..24129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1419.3114.1 ID=mRNA_L-elsbetiae_contig1419.3114.1|Name=mRNA_L-elsbetiae_contig1419.3114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3136bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:20994..24129- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACCGCGACGGGCCGTGCAGAGGAGCCAACCGCGCCGGGTTCGA
GTTTCCTATTTTCGAGGTGATTTTTGTTGCGTGTGGGGTCCGTCGCTGTG
ACCGACCTCACACCTGGTACGGATTTTAGTCACCGGATGTATCTATCTAT
CTATATAGTTTACCTTTTGTCGCAGCCTAATGTGGCGTGTCTTGCCTACT
TTTAAAAAATAAACAATGAATCAAAGATAGAACCTACCCCACACTAGAGC
AAGGACTCGATATGGGGTTCAAAGGGTATTCCTTACAGAGACGTAATATT
TGGCGAAGCGAGCAGAAAAGCAACCTAAACTATCAGAAGAGTTCAACATC
TCCCCTGCAAAGATTTAAGATTTGCGAGTTCGGCCGACAATTATTCAGGC
GGGTAGAAGTAATGCACAGCCAGTACCAAGGCGCACCCAGGCACGCAAAG
ACTAGGAAATAATATGTATCTCAAACAATCTCGTTTCTTGTAAGGATGTC
TATTGAAAAAGCATAGAGCTGCATTATTGGTCCGTTGGTGATGGGATTTG
TGGAGACAAACACCCTTTGGGGGTTAAGGTGGGACTGACTGACCAAGCAA
CCCACAACAACAACCTAACAAGCAGTAGCAGCAATTATAACTATTAACTT
TGAATCTAACACGTCCTGTAAACACGCAGGTAGGTTTATATGGCCTGAGT
GGACGTGTTCCAGGTAGGTGATTCGGGCCCTGTGGCTCGATACCCGCCGT
CTCCGCTTGTGAAGCATTTTTTGAACCCGTCACGATCTTCGTCGCTTTCC
TCCTGTTGGTAACCATGCGCAGTACTGCCACCCTGACTACCACTCAGACG
ACGACCGCGAGGGCGACTACACCAACGATGTGGACATCTGCGGCAACAGA
GAGATGACCGGTCAATCCGTGATCGGTAATGGCAACACACGCGTTGGTCG
ATGTGTCGGCCCTCCGCAGTAGCCGAGAAGCCCAAACCCAAACACCATCA
CGGGCCGCGTACTTACTTACACACGAGCGCTCGCCCTCTGCCGCCCTCGG
GCCGTGACGTTTACTGCTGGTGCTGTTTCCCTCCGGCGCATCGCGCCTTC
TCGTTCCAAGCCGACTTGGAAAATGCTGACTGACCTGCTGGTGTATATCT
ATCCGCGTGTAATAGCCGAAGATGACCGAAACTGATCGTTGAGCTGCCCG
CGGCACTGCGCGCAACAAACCAGGCGGCTTCGTCTACAGGGGGGCAAAAC
TCGCGGACCTGCTGTACGGCGCTTACGTCTTCGCAGACTGGAACAACAGG
TGTGTTTTTGGTTTTTGTCTGATTCCGGGGGCATGCTTGGAGGCCGCAGG
CAGTACGTACCTGTCGAAACGGTTTCAAGCGCATTGCAACTGCTGTAACT
TTCACCGGCCGGTGACATGAACATGAATGCCCCACAAGGCATGTTATTTG
TAGTCTACTGCTGTAGATTTGCTACACGGGCTTCAGGAGAAGACCCCGCG
GAATCCGGCGTTCGTGATCTGACGCATGGCGGGTTATGGACCATGGCTGC
ACGTTGCACACAGGGGCGTGTACTACATCAAGAAGGACGGCAATGGGGTG
TGGAAGAGTGGCACCATCATCAGCGACCGGAGCATCAGAGTTGTCGCTTT
CGCAGAGGACGCCGATGTGAGAGGGGGGAGGAAAATGGGGATATAAACGT
ATTTTCGGGTGCTGTTGCTGCTGTTGTTGTTGCTGCCGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGCCAAATCAAGTCCGACC
CGATCTCGCTCTGCTCAGTACCGTCCTCTGTCCGTGCGTGATGCCGTCGA
TCCCGTGGCCACAAGCTGTGCAGCCTACCCAAAAAAAGGTGCTTCGTTAA
GTGTAGATATGTATTTCTGGTGAAAAAGGGCTAAAACGACTTAAATTACC
TGACAACACACATACATACTTCGTACATAGTCTATGGTATGGAGGATGAT
GCCTGCGAAACAACGCCCAACACAAGCAATTACAGCCCAATCAGGGCGAG
CACGCACCGAAGTCGGGGCTGTTTAACCATTCGCCCGCCCTGTTTAACCG
CAAGGACCGCCTACGCGAAGAAAATCGTCAAATTCAGGTTCATATGTGAA
ATAGAGTCAGGGGGTTCCGTAACCCTAACCGCAACCGTGACCCTAACCAC
GACCCCCCCCCCCCATTCCTCCGATTCTATCTTTATCCCATATATTTTGC
TGACTGAAAACCTGCGTAGACTATCATTCCGCAAACCTCCTCTCTCCGGC
CCTTCTGTGTTGTGCGGTTCGGTAAACATGTGCACTTTGGGGATGGATCT
GCTACTTTTACCCCCTTCTGCGGCCCTGTTCCAGGGGGAACTGATGCTCC
TCAATGGGTGAGCAGGCCATTGCACTCTCCCCGGACGAGTGCGCGGTACT
CCCGCTCGCGATAGATTACAAGGGGCGGTTCGTAGGCCTTGTAACAACGG
CCGAGGCAGAGAGCGGGGGTGCTCAAGCCACGCCCAAAACGAGACCCCCG
GGATTCGCGCTTTTGTTGCTGATACATGCAGCAGTACACGCAAGATCAGC
TTGGGAAGAGGGCAAAGTAGAGGGGACCCGTCGTGGCCGAACAGGAGGAG
GGGGAGGTGCTTTCGTTGCACGGACAGAGCGGGGCGTGCTTAAGCAGTCG
CCTTGTTTGCTTAGCCTCTTGGTTTTTCAACGGAAAAACTACACAGAATA
TGTTATAATATGTACCGCTGAAATATTTTCCCGTTTTCTTCAGAGCGTAC
ATACATACTACCATGTGAAATCCATGCGTCTGAATGAGATGCCCTCACGG
CCGCCCACCGTCTCCGCGTCCGCGACGTAGAAAAAAAATCTACAATCTCC
CGTGCGGAGACTTGTGCGGCGAGCCTGCCCCTTCCCTTTTGGCGCCTGCC
GAAGACTACGTCGGATGCTTTCACGACGGAAGGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1419:20994..24129-

>mRNA_L-elsbetiae_contig1419.3114.1 ID=mRNA_L-elsbetiae_contig1419.3114.1|Name=mRNA_L-elsbetiae_contig1419.3114.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:20994..24129- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACCGCGACGGGCCGTGCAGAGGAGCCAACCGCGCCGGGTTCGA
GTTTCCTATTTTCGAGATGGAGGACCGCGACGGGCCGTGCAGAGGAGCCA
ACCGCGCCGGGTTCGAGTTTCCTATTTTCGAGTACTGCCACCCTGACTAC
CACTCAGACGACGACCGCGAGGGCGACTACACCAACGATGTGGACATCTG
CGGCAACAGAGAGATGACCGGTCAATCCGTGATCGTACTGCCACCCTGAC
TACCACTCAGACGACGACCGCGAGGGCGACTACACCAACGATGTGGACAT
CTGCGGCAACAGAGAGATGACCGGTCAATCCGTGATCGGCGGCTTCGTCT
ACAGGGGGGCAAAACTCGCGGACCTGCTGTACGGCGCTTACGTCTTCGCA
GACTGGAACAACAGGCGGCTTCGTCTACAGGGGGGCAAAACTCGCGGACC
TGCTGTACGGCGCTTACGTCTTCGCAGACTGGAACAACAGGGGCGTGTAC
TACATCAAGAAGGACGGCAATGGGGTGTGGAAGAGTGGCACCATCATCAG
CGACCGGAGCATCAGAGTTGTCGCTTTCGCAGAGGACGCCGATGGGCGTG
TACTACATCAAGAAGGACGGCAATGGGGTGTGGAAGAGTGGCACCATCAT
CAGCGACCGGAGCATCAGAGTTGTCGCTTTCGCAGAGGACGCCGATGGGG
AACTGATGCTCCTCAATGGGGGGAACTGATGCTCCTCAATGGAAAAAAAA
TCTACAATCTCCCGTGCGGAGACTTGTGCGGCGAGCCTGCCCCTTCCCTT
TTGGCGCCTGCCGAAGACTACGTCGGATGCTTTCACGACGGAAGGCGCAA
AAAAAATCTACAATCTCCCGTGCGGAGACTTGTGCGGCGAGCCTGCCCCT
TCCCTTTTGGCGCCTGCCGAAGACTACGTCGGATGCTTTCACGACGGAAG
GCGC
back to top