mRNA_L-elsbetiae_contig1419.3112.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1419.3112.1
Unique NamemRNA_L-elsbetiae_contig1419.3112.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1419.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1419contigL-elsbetiae_contig1419:13334..15612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size427
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1419.3112.1prot_L-elsbetiae_contig1419.3112.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1419 15328..15612 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.9249034-UTR-L-elsbetiae_contig1419:13333..134711622815564.9249034-UTR-L-elsbetiae_contig1419:13333..13471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 13334..13471 +
1691682962.4690037-UTR-L-elsbetiae_contig1419:13333..134711691682962.4690037-UTR-L-elsbetiae_contig1419:13333..13471Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 13334..13471 +
1622815564.938804-UTR-L-elsbetiae_contig1419:15325..153271622815564.938804-UTR-L-elsbetiae_contig1419:15325..15327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 15326..15327 +
1691682962.4779792-UTR-L-elsbetiae_contig1419:15325..153271691682962.4779792-UTR-L-elsbetiae_contig1419:15325..15327Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1419 15326..15327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.949318-CDS-L-elsbetiae_contig1419:15327..156121622815564.949318-CDS-L-elsbetiae_contig1419:15327..15612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 15328..15612 +
1691682962.4864569-CDS-L-elsbetiae_contig1419:15327..156121691682962.4864569-CDS-L-elsbetiae_contig1419:15327..15612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1419 15328..15612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1419.3112.1

>prot_L-elsbetiae_contig1419.3112.1 ID=prot_L-elsbetiae_contig1419.3112.1|Name=mRNA_L-elsbetiae_contig1419.3112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MEGSGHHYFIGASNDLFNANPDLPRISTALNHEPFYLPVAMGKSASNYAK
AELQARQNMQKLAEDAAGLPFPSVFFAPGGLSYPFDVGPQKAIQY
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mRNA from alignment at L-elsbetiae_contig1419:13334..15612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1419.3112.1 ID=mRNA_L-elsbetiae_contig1419.3112.1|Name=mRNA_L-elsbetiae_contig1419.3112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2279bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:13334..15612+ (Laminarionema elsbetiae ELsaHSoW15)
CATACATGCACACGAATAGGTCCATCTTGAGAGGAGTCACAATTCAGTGA
CAGGACATCATCTACAAGAAGTGTGCCGGTATTCAGGACCTTTCGTAGTG
GGAGCCCCCGCTTGATCACGCTGTGAGAAATAAGAAACGTGAGTGAACCT
TGAGGTTTGATACCCTGCTAGGAGTGGTCGGGTCCGCCCTACACTGCTCC
TCTGTATCGTAGTATCCTTTAAACTATGCTGTAGCAAGCCGCCGGGGTAG
ATCTAGAGCGGACAACTTCGGTAGATCTCTATCTAGATATCTTGTAGAGG
AGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGTCCCCACTCGACAGGTG
TTTACGCGTTGACTGTTGAACCTGCGTCGCGTCTTCCATACCATTATTTC
GTTGGGCGATTTGGTCTATTGCAGCATTGCAAGCCACACCTCGCTTTCGA
TTGCACTCGGCTGAAAGAACGTACAATACAATACATATCTACAAAAAGCC
AACATAGATAGATAGATATAGATATGTACTTCGTACGTATATCTTGCTTG
AATCACCTGTAGTGTGCATATCTAGGTAGCCAGAAAGAGAAAGTATTTCC
GTTGCCACAGCCAGTCCCCCACAGCCCCACCAGCCCATGCGTTTAGATGG
TAAATCTAGAGTTGCGATGCTCGGCAAGGCACCCATTGTTGTCTGCATTG
TGTAGGCAAATATCCGGTGCGTACCGGTGTGCGCCTATGTATTGTAGCAA
GCCGGGATTGATGTATTCAGTGGACACCGGAATATAGACAGACCTAGACA
CAACCTTGACCAAAAGCACGCGGCTGCCGCAAGAAGGATGGAACCCATGA
CCAAAAGCACGCCATACACTCGAAGCTATATTTTCGTCTGTCTCTATACG
GTGGGCGACTAAGGCGTCGGAGGGGGTAGGACGTGTGCTGCGCTCGGGTT
GATGTGAAGCGTGGGTTGTTGCCTCAGCCAACTTGCCCCAACGGAAAGAA
AAGCAGATAGATGTTGCGACAAACAACTGTCCCTCACTGTGTTTTCAGTT
GCTGGAATAGGTTTCTGCTGTGATGGGGAGGTGTTCCCGCGTGAGCGAAC
AAAGCGATGCATTTCCTGTTCGTCTGGTCGCTAGGGCAGCAAAATTTGGT
TTCAGATATTTTGCTTATCTGGTGATTTTGAGGAGTATGCTTGGTTTCAA
ATATTTTGCCCAAATAGATATTTACTTCGAACTGGTCAACCTCCAAAAAA
TGGTCTGCTCAAACAAGTTGGTTTTACTTCCGACCTCTTGAAAGGAAATC
AGTTAAATTGTTAAATAATCATAATGAACCTTACCCCAAAAATGAGACGG
ACTGCGTGGTTCAACCGGTATTCGAGGTATCCGACTGAAAAAATCGTTCC
TGGGGGACTAGTCTATCTAGATATGAAACTATAATACACACTTCAAGTGC
ATACATACCCCTGTTGTACCAGTTGTCCAATAGCCCTCCCTTACTTGCCG
TCCCAGACAAAAGTACATGGAGTAAAATCGCAATCCGTGTCCAGCTTTTT
TTATCTTCGGTATTTATGGGGTACCGGGGTTAGAACCGGCCACTGCCCCG
AGCAAGGCGTTGGCAGTGAAGTCCATCGGGGGGGGGGGGGTCCTTCATTA
AGTAAGTTGACGACAAAATAGCACATTTTGCGTGGACTGCGGTCTCTAAA
AGTCTAAACTGACTGTGCTGTGACCGCTCACCAATACCTTGTCCTCGTCA
TAGACCTCCTCCTTCCACACTATGCCCACTCACCCGTCTCTCCCCTCGCA
CGTTTTGCCCGACAGTCGAAAGCATGCTGTCCGAGCTTGGGATGTTCATG
CTTGCTGAAACCGTTCTAGCCGAGCTACCGGCAATAGCTCGTCCACGGTA
TCATACAGGCTCGGCTAGGCCCATGGCATGTAATTCCAACGCCGTCGCCA
AAACGGTTGTGAGCGACAAGTTTCGCGTCTTGGCCGTCGCAGGTATGGAG
GGTTCTGGCCATCACTACTTCATTGGCGCCAGCAATGACCTGTTCAACGC
TAACCCCGACCTTCCTAGAATCAGCACGGCCCTGAATCACGAACCGTTCT
ACCTACCTGTGGCCATGGGTAAAAGCGCTTCCAACTACGCTAAAGCCGAG
CTCCAGGCCAGGCAAAACATGCAGAAGCTGGCGGAGGACGCAGCTGGCTT
GCCCTTTCCCTCAGTATTTTTTGCGCCAGGCGGACTTTCCTATCCGTTCG
ACGTTGGCCCGCAGAAAGCGATACAGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1419:13334..15612+

>mRNA_L-elsbetiae_contig1419.3112.1 ID=mRNA_L-elsbetiae_contig1419.3112.1|Name=mRNA_L-elsbetiae_contig1419.3112.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig1419:13334..15612+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGTTCTGGCCATCACTACTTCATTGGCGCCAGCAATGACCTGTT
CAACGCTAACCCCGACCTTCCTAGAATCAGCACGGCCCTGAATCACGAAC
CGTTCTACCTACCTGTGGCCATGGGTAAAAGCGCTTCCAACTACGCTAAA
GCCGAGCTCCAGGCCAGGCAAAACATGCAGAAGCTGGCGGAGGACGCAGC
TGGCTTGCCCTTTCCCTCAGTATTTTTTGCGCCAGGCGGACTTTCCTATC
CGTTCGACGTTGGCCCGCAGAAAGCGATACAGTACATGGAGGGTTCTGGC
CATCACTACTTCATTGGCGCCAGCAATGACCTGTTCAACGCTAACCCCGA
CCTTCCTAGAATCAGCACGGCCCTGAATCACGAACCGTTCTACCTACCTG
TGGCCATGGGTAAAAGCGCTTCCAACTACGCTAAAGCCGAGCTCCAGGCC
AGGCAAAACATGCAGAAGCTGGCGGAGGACGCAGCTGGCTTGCCCTTTCC
CTCAGTATTTTTTGCGCCAGGCGGACTTTCCTATCCGTTCGACGTTGGCC
CGCAGAAAGCGATACAGTAC
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