mRNA_L-elsbetiae_contig10.31.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.31.1
Unique NamemRNA_L-elsbetiae_contig10.31.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A0R6M4Q0_UNDPI (30S ribosomal protein S14, chloroplastic n=31 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4Q0_UNDPI)

HSP 1 Score: 183 bits (465), Expect = 1.800e-58
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMIEREKKRE+LV+KY ++RK LLLEFKKANTFSDQM +HKKIEKLPRNSS+IRLRNRCWRTGRSRGVYRDFGLCRHM+REM HNCLLPGVRKASW
Sbjct:    1 MAKQSMIEREKKRERLVIKYREKRKSLLLEFKKANTFSDQMEVHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMVREMGHNCLLPGVRKASW 100
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BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A1I9LVJ7_9PHAE (30S ribosomal protein S14, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 5.160e-58
Identity = 91/100 (91.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMIEREKKREKLVLKYSQ+R+ LLLEFKKANTFSDQM +HKKIEKLPRNSS+IRLRNRCWRTGRSRGVY+DFGLCRHMIREMAHN +LPGVRKASW
Sbjct:    1 MAKQSMIEREKKREKLVLKYSQKRETLLLEFKKANTFSDQMGLHKKIEKLPRNSSRIRLRNRCWRTGRSRGVYKDFGLCRHMIREMAHNGILPGVRKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A8F0FAM9_9PHAE (Ribosomal protein S14 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAM9_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.220e-56
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMI+REKKREKLV KYS++RK LL++FKKAN F DQM IHKKIEKLPRNS+KIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNC+LPGVRKASW
Sbjct:    1 MAKQSMIQREKKREKLVEKYSEKRKALLIDFKKANNFVDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A8F0F7A7_9PHAE (Ribosomal protein S14 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A7_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.360e-54
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMIEREKKR K V KYS+RR+ LLLEFKKA+TFS QM IHKKIE+LPRNSS IRLRNRCWRTGRSRG+YRDFGLCRHMIREMAH+C+LPGVRKASW
Sbjct:    1 MAKQSMIEREKKRTKSVKKYSERRRLLLLEFKKADTFSKQMEIHKKIEQLPRNSSMIRLRNRCWRTGRSRGIYRDFGLCRHMIREMAHDCILPGVRKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A2R4QPV6_9PHAE (30S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 6.770e-54
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMI+REKKREKLVLKY ++R FLL EFK A+ F  QM I KKIEKLPRNSS+IRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW
Sbjct:    1 MAKQSMIQREKKREKLVLKYREKRDFLLFEFKTADNFLQQMEIRKKIEKLPRNSSRIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A1L2F1U9_9PHAE (Ribosomal protein S14 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1U9_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.530e-50
Identity = 77/100 (77.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAK+SMI+RE+KREKLV +Y ++R+ LLLEFKK N F +QM I+++I+KLPRNSSKIRL+NRCWRTGR+RGVYRDFGLCRHMIREMAHNC+LPGV+KASW
Sbjct:    1 MAKKSMIQRERKREKLVFRYIEKRQLLLLEFKKTNNFVEQMQINRRIQKLPRNSSKIRLKNRCWRTGRTRGVYRDFGLCRHMIREMAHNCILPGVKKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A2I4Q2G1_9PHAE (30S ribosomal protein S14, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2G1_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 7.300e-49
Identity = 78/100 (78.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQSMIEREKKR KLV +Y+++RK LL EFK++ TF D+  IH+KIEKLPRNSS IR+RNRCW+TGRSRGVYRDFGLCRHM+REMAHN +LPGVRKASW
Sbjct:    1 MAKQSMIEREKKRVKLVNRYNEKRKLLLSEFKESKTFLDKQVIHQKIEKLPRNSSNIRIRNRCWQTGRSRGVYRDFGLCRHMLREMAHNGMLPGVRKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A8E5BHX8_9PHAE (Ribosomal protein S14 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BHX8_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.470e-48
Identity = 74/100 (74.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQS++EREKKR+K+++KYS RRK LL++ KKANTF +Q+ IHK IEKLPRN++++R+RNRCW TGRSRGVYRDFGLCRHMIR MAHNC+LPG++KASW
Sbjct:    1 MAKQSILEREKKRKKIIIKYSVRRKNLLIKLKKANTFLEQVQIHKIIEKLPRNTAQVRVRNRCWITGRSRGVYRDFGLCRHMIRNMAHNCILPGIKKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A141BSF2_9PHAE (30S ribosomal protein S14, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSF2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.090e-48
Identity = 77/100 (77.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAK+S+I+RE+KREKLV +Y +RR+FLLLE KK   F  QM I++KI+KLPRNSSKIRLRNRCWRTGR+RGVYRDFGLCRHMIREMA NC+LPGV+KASW
Sbjct:    1 MAKKSLIQRERKREKLVSRYMERRQFLLLELKKTTNFVQQMQINRKIQKLPRNSSKIRLRNRCWRTGRTRGVYRDFGLCRHMIREMALNCILPGVKKASW 100
[Close]
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Match: A0A7S6U9W6_9STRA (30S ribosomal protein S14, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9W6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.410e-46
Identity = 75/100 (75.00%), Postives = 85/100 (85.00%), Query Frame = 1 
Query:    1 MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKLPRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW 300
            MAKQS+IEREKKR+ LV+KY ++RK  L  F K N F  +M +HKKIEKLPRNSS+IRLRNRCWRTGRSRG YRDFGLCRHMIREM HN LLPG+RK+SW
Sbjct:    1 MAKQSLIEREKKRQHLVIKYKKKRKTFLALFNKENNFETKMLLHKKIEKLPRNSSRIRLRNRCWRTGRSRGTYRDFGLCRHMIREMGHNGLLPGLRKSSW 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0R6M4Q0_UNDPI1.800e-5889.0030S ribosomal protein S14, chloroplastic n=31 Tax=... [more]
A0A1I9LVJ7_9PHAE5.160e-5891.0030S ribosomal protein S14, chloroplastic n=5 Tax=E... [more]
A0A8F0FAM9_9PHAE1.220e-5688.00Ribosomal protein S14 n=1 Tax=Desmarestia aculeata... [more]
A0A8F0F7A7_9PHAE2.360e-5486.00Ribosomal protein S14 n=1 Tax=Protohalopteris sp. ... [more]
A0A2R4QPV6_9PHAE6.770e-5486.0030S ribosomal protein S14 n=3 Tax=Fucaceae TaxID=3... [more]
A0A1L2F1U9_9PHAE1.530e-5077.00Ribosomal protein S14 n=1 Tax=Coccophora langsdorf... [more]
A0A2I4Q2G1_9PHAE7.300e-4978.0030S ribosomal protein S14, chloroplastic n=1 Tax=D... [more]
A0A8E5BHX8_9PHAE1.470e-4874.00Ribosomal protein S14 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A141BSF2_9PHAE2.090e-4877.0030S ribosomal protein S14, chloroplastic n=13 Tax=... [more]
A0A7S6U9W6_9STRA1.410e-4675.0030S ribosomal protein S14, chloroplastic n=1 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:55696..55998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.1e-43
Seed eggNOG ortholog2880.D1J7A5
Preferred namerps14
KEGG koko:K02954,ko:K20101
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003735,GO:0003824,GO:0004004,GO:0004386,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0199@1,KOG1741@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03019
Exons1
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815232.729383-CDS-L-elsbetiae_contig10:55695..559981622815232.729383-CDS-L-elsbetiae_contig10:55695..55998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 55696..55998 +
1691682784.2312353-CDS-L-elsbetiae_contig10:55695..559981691682784.2312353-CDS-L-elsbetiae_contig10:55695..55998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 55696..55998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.31.1prot_L-elsbetiae_contig10.31.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 55696..55998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.31.1

>prot_L-elsbetiae_contig10.31.1 ID=prot_L-elsbetiae_contig10.31.1|Name=mRNA_L-elsbetiae_contig10.31.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MAKQSMIEREKKREKLVLKYSQRRKFLLLEFKKANTFSDQMAIHKKIEKL
PRNSSKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCLLPGVRKASW
*
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mRNA from alignment at L-elsbetiae_contig10:55696..55998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.31.1 ID=mRNA_L-elsbetiae_contig10.31.1|Name=mRNA_L-elsbetiae_contig10.31.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=303bp|location=Sequence derived from alignment at L-elsbetiae_contig10:55696..55998+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAAGCAATCGATGATTGAAAGAGAAAAAAAAAGAGAAAAATTAGT
TCTAAAGTATAGTCAAAGACGCAAGTTTCTTCTTCTCGAATTTAAGAAAG
CAAATACTTTTTCAGATCAAATGGCAATTCATAAAAAAATAGAAAAGTTA
CCACGTAATAGCTCCAAAATTCGCTTACGCAATAGATGTTGGCGCACTGG
GCGTAGTCGAGGCGTATACAGAGATTTTGGGTTATGCCGCCATATGATAA
GAGAAATGGCACATAATTGTTTATTACCCGGTGTAAGAAAAGCTAGCTGG
TAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:55696..55998+

>mRNA_L-elsbetiae_contig10.31.1 ID=mRNA_L-elsbetiae_contig10.31.1|Name=mRNA_L-elsbetiae_contig10.31.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig10:55696..55998+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTAAGCAATCGATGATTGAAAGAGAAAAAAAAAGAGAAAAATTAGT
TCTAAAGTATAGTCAAAGACGCAAGTTTCTTCTTCTCGAATTTAAGAAAG
CAAATACTTTTTCAGATCAAATGGCAATTCATAAAAAAATAGAAAAGTTA
CCACGTAATAGCTCCAAAATTCGCTTACGCAATAGATGTTGGCGCACTGG
GCGTAGTCGAGGCGTATACAGAGATTTTGGGTTATGCCGCCATATGATAA
GAGAAATGGCACATAATTGTTTATTACCCGGTGTAAGAAAAGCTAGCTGG
TAAATGGCTAAGCAATCGATGATTGAAAGAGAAAAAAAAAGAGAAAAATT
AGTTCTAAAGTATAGTCAAAGACGCAAGTTTCTTCTTCTCGAATTTAAGA
AAGCAAATACTTTTTCAGATCAAATGGCAATTCATAAAAAAATAGAAAAG
TTACCACGTAATAGCTCCAAAATTCGCTTACGCAATAGATGTTGGCGCAC
TGGGCGTAGTCGAGGCGTATACAGAGATTTTGGGTTATGCCGCCATATGA
TAAGAGAAATGGCACATAATTGTTTATTACCCGGTGTAAGAAAAGCTAGC
TGGTAA
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