prot_L-elsbetiae_contig14167.3095.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14167.3095.1
Unique Nameprot_L-elsbetiae_contig14167.3095.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length73
Homology
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BLAST of mRNA_L-elsbetiae_contig14167.3095.1 vs. uniprot
Match: J3L2B6_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3L2B6_ORYBR)

HSP 1 Score: 49.3 bits (116), Expect = 5.030e-5
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0 
Query:    9 DKYAYTTAIHAAGQLGRWARCVRYLDEMDANGVEKDVVTISCAISACA-----DKGQW 61
            D  ++T+ I A  + G+W + +R+L EM A G+  + VTI   +SACA     DKG+W
Sbjct:  187 DVVSWTSMISALARCGQWDKVLRFLSEMQAEGINPNKVTIISVLSACAQTQAVDKGRW 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14167.3095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
J3L2B6_ORYBR5.030e-539.66Uncharacterized protein n=2 Tax=Oryza brachyantha ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 1.4E-5
score: 22.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 8.988
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..66
e-value: 3.3E-13
score: 51.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14167contigL-elsbetiae_contig14167:3644..3862 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14167.3095.1mRNA_L-elsbetiae_contig14167.3095.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14167 3644..3862 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14167.3095.1 ID=prot_L-elsbetiae_contig14167.3095.1|Name=mRNA_L-elsbetiae_contig14167.3095.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MQEDGVWVDKYAYTTAIHAAGQLGRWARCVRYLDEMDANGVEKDVVTISC
AISACADKGQWAQVCGGPRALV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf