mRNA_L-elsbetiae_contig14164.3094.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14164.3094.1
Unique NamemRNA_L-elsbetiae_contig14164.3094.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14164.3094.1 vs. uniprot
Match: A0A6H5K5N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.420e-16
Identity = 44/71 (61.97%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:    1 TQAEAQSLREIVHASLEQSKTMQQASVDLRQRVALGEECLQEALKETLSLREEITKRKQHGEVLLARIRSL 213
            TQ + QSLR++V AS ++S+ +++ S  LR++VA+GEECL +AL+E+LSLREEI +RKQHGEVLLARIR L
Sbjct:  217 TQVDLQSLRDVVQASFKESQAVKKESAALREKVAIGEECLHDALQESLSLREEIARRKQHGEVLLARIRFL 287
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BLAST of mRNA_L-elsbetiae_contig14164.3094.1 vs. uniprot
Match: D8LEA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 6.780e-16
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    1 TQAEAQSLREIVHASLEQSKTMQQASVDLRQRVALGEECLQEALKETLSLREEITKRKQHGEVLLARIRSL 213
            TQ + QSLR++V AS ++S+ +++ S  LR++VA+GEECL +AL+E LSLREEI +RKQHGEVL ARIR L
Sbjct:  315 TQVDLQSLRDVVQASFKESQAVKEESAALREKVAIGEECLYDALQEALSLREEIARRKQHGEVLFARIRFL 385
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14164.3094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N0_9PHAE1.420e-1661.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEA8_ECTSI6.780e-1660.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14164contigL-elsbetiae_contig14164:339..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815563.1367824-CDS-L-elsbetiae_contig14164:338..4131622815563.1367824-CDS-L-elsbetiae_contig14164:338..413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14164 339..413 +
1691682961.5889935-CDS-L-elsbetiae_contig14164:338..4131691682961.5889935-CDS-L-elsbetiae_contig14164:338..413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14164 339..413 +
1622815563.15255-CDS-L-elsbetiae_contig14164:928..10691622815563.15255-CDS-L-elsbetiae_contig14164:928..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14164 929..1069 +
1691682961.5996733-CDS-L-elsbetiae_contig14164:928..10691691682961.5996733-CDS-L-elsbetiae_contig14164:928..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14164 929..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14164.3094.1prot_L-elsbetiae_contig14164.3094.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14164 339..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14164.3094.1

>prot_L-elsbetiae_contig14164.3094.1 ID=prot_L-elsbetiae_contig14164.3094.1|Name=mRNA_L-elsbetiae_contig14164.3094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
TQAEAQSLREIVHASLEQSKTMQQASVDLRQRVALGEECLQEALKETLSL
REEITKRKQHGEVLLARIRSLK
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mRNA from alignment at L-elsbetiae_contig14164:339..1069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14164.3094.1 ID=mRNA_L-elsbetiae_contig14164.3094.1|Name=mRNA_L-elsbetiae_contig14164.3094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=731bp|location=Sequence derived from alignment at L-elsbetiae_contig14164:339..1069+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCAGGCGGAGGCGCAGTCTCTGCGCGAGATCGTCCATGCGTCTCTCGA
GCAGTCGAAGACGATGCAGCAAGCAGTGAGTGCACACCTTCCTTCAACGG
CACCAGCAGCGGTATCGTGTGCTTGGTCTGATTGGTTTGATGCGCACGCA
CGGGCGTGCTGTCCCAAATGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTTTTTTTTTTTCT
TTTCCTTGTCTCCTTTCGTACCTCAGATGTCTCCCGCTGCGGGGGCGGGG
GGGNNNNNNNNNNCTCCCACCGCCCCACCAGCGGGTTTGGGTGGTTTGTC
TGGTTTGTTTGTTGCCCCCCCCCGGGCGGGCTGCCCCAAACCCCCCCCCC
CCCCCCCCCTCCTACTCTACCGCACCCCGGGCCTACTTGTTGTGCTCCGT
TCCTTTTTCCCAGACGTCCAAAGGAGCATGCGCTTTCCGTGTAGTTGCCG
GAAGGAAGTCTGTGCTTACGGCTCTCCTCGACCTGGGCCTCATTCGCGCT
GCTCGCTCTTGTTATTGCAACACGGATTGAATTAATTCAGTCGGTCGACC
TCCGGCAGCGGGTTGCTTTGGGGGAGGAGTGCCTGCAGGAAGCGTTGAAA
GAGACGCTGTCCCTGAGAGAGGAGATCACCAAAAGAAAACAGCACGGGGA
AGTTTTACTGGCCAGGATCCGCTCTCTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14164:339..1069+

>mRNA_L-elsbetiae_contig14164.3094.1 ID=mRNA_L-elsbetiae_contig14164.3094.1|Name=mRNA_L-elsbetiae_contig14164.3094.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig14164:339..1069+ (Laminarionema elsbetiae ELsaHSoW15)
ACGCAGGCGGAGGCGCAGTCTCTGCGCGAGATCGTCCATGCGTCTCTCGA
GCAGTCGAAGACGATGCAGCAAGCAACGCAGGCGGAGGCGCAGTCTCTGC
GCGAGATCGTCCATGCGTCTCTCGAGCAGTCGAAGACGATGCAGCAAGCA
TCGGTCGACCTCCGGCAGCGGGTTGCTTTGGGGGAGGAGTGCCTGCAGGA
AGCGTTGAAAGAGACGCTGTCCCTGAGAGAGGAGATCACCAAAAGAAAAC
AGCACGGGGAAGTTTTACTGGCCAGGATCCGCTCTCTCAAGTCGGTCGAC
CTCCGGCAGCGGGTTGCTTTGGGGGAGGAGTGCCTGCAGGAAGCGTTGAA
AGAGACGCTGTCCCTGAGAGAGGAGATCACCAAAAGAAAACAGCACGGGG
AAGTTTTACTGGCCAGGATCCGCTCTCTCAAG
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