mRNA_L-elsbetiae_contig14159.3091.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14159.3091.1
Unique NamemRNA_L-elsbetiae_contig14159.3091.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.450e-18
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = -1
Query:   13 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 186
            V EV+++I+ADQQY  RLFEKTGT MT DGSGDERIN+EG+SGP NFMD + GGSS E
Sbjct: 1751 VAEVIEKINADQQYRSRLFEKTGTGMTADGSGDERINLEGVSGPLNFMDADVGGSSGE 1808          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5K5A6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A6_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.150e-13
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -1
Query:   13 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 186
            V +  +EID D+QY FRLFEKTG  MT DGSGD++IN+EG+S  Y+FMD+E G S++E
Sbjct:  233 VAQATEEIDKDEQYRFRLFEKTGCGMTADGSGDDKINLEGLS-TYSFMDMEGGASADE 289          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5K1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.320e-13
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = -1
Query:   13 RHQTAPFEAEASASDTL*RHRRSAGAEVGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 267
            R+  +P EA+A    T    R    + V +  +E+D D+QY FRLFEKT   MT DGSGD++IN+EG+S  Y+FMDVE G S++E
Sbjct:   28 RNSISPQEAKAL---TCSERRVFLTSWVAQATEEMDKDEQYRFRLFEKTECGMTADGSGDDKINLEGLS-TYSFMDVEGGASADE 108          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: D8LRF1_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = -1
Query:   10 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFM----DVEDGGSSEEG 186
            VG  ++E+D+ ++Y FRLFEK G  MTVDGSGD+RI +EG+  PY F       +D GSSE G
Sbjct:  534 VGAAMEELDSREEYRFRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFAGDGDSSDDEGSSETG 596          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5JXP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.480e-10
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = -1
Query:   10 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEEG 186
            +G  +  ++  Q Y +RLFEK G  MTVDGSGD+RI +EG+  PY F D ED    E+G
Sbjct:   84 MGAAMARLNIQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFADGEDSSDDEQG 142          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5KLU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.540e-10
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = -1
Query:   10 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEEG 186
            +G  +  +D+ Q Y +RLFEK G  MTVDGSGD+RI +EG+  PY F + ED    E+G
Sbjct:   89 MGAAMARLDSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDEQG 147          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5JEE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.390e-10
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = -1
Query:   13 IDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 165
            ++ D+QY FRLFEK    MT DGSGD++IN+EG+S  Y+FMDVE G S++E
Sbjct:    1 MEKDEQYRFRLFEKIECGMTADGSGDDKINLEGLS-TYSFMDVEGGASADE 50          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5JBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBK8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.760e-10
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = -1
Query:   13 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 186
            +G  +  +++ Q Y +RLFEK G  MTVDGSGD+RI +EG+  PY F + EDG   E+
Sbjct:   62 MGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDGSDDEQ 119          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5KL79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL79_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.620e-10
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = -1
Query:   13 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEE 186
            +G  +  ++  Q Y +R+FEK G  MTVDGSGD+RI +EG+  PY F + ED  S +E
Sbjct:   81 MGAAMARLNRQQTYRYRIFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSSDDE 138          
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Match: A0A6H5KZ23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ23_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.260e-10
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = -1
Query:   10 VGEVVQEIDADQQYPFRLFEKTGTRMTVDGSGDERINIEGMSGPYNFMDVEDGGSSEEG 186
            +G  +  +++ Q Y +RLFEK G  MTVDGSGD+RI +EG+  PY F + ED    E+G
Sbjct:  100 MGAAMARLNSQQAYRYRLFEKCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDEQG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14159.3091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE4.450e-1872.41Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K5A6_9PHAE1.150e-1360.34DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K1I2_9PHAE1.320e-1348.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF1_ECTSI1.040e-1052.38C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JXP4_9PHAE1.480e-1049.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLU8_9PHAE2.540e-1049.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JEE5_9PHAE4.390e-1058.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBK8_9PHAE4.760e-1048.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL79_9PHAE5.620e-1046.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ23_9PHAE8.260e-1047.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14159contigL-elsbetiae_contig14159:3693..4094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size403
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.7754905-CDS-L-elsbetiae_contig14159:3692..40941622815562.7754905-CDS-L-elsbetiae_contig14159:3692..4094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14159 3693..4094 +
1691682961.3597472-CDS-L-elsbetiae_contig14159:3692..40941691682961.3597472-CDS-L-elsbetiae_contig14159:3692..4094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14159 3693..4094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14159.3091.1prot_L-elsbetiae_contig14159.3091.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14159 3693..4094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14159.3091.1

>prot_L-elsbetiae_contig14159.3091.1 ID=prot_L-elsbetiae_contig14159.3091.1|Name=mRNA_L-elsbetiae_contig14159.3091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
LPLPLLRAAAVFHVHEVVRPGHAFDVDALVSRAVHCHSRPCLLEQTERIL
LVSIDFLDNLSHLCARRSSMSLKSVGGRGFCLKRCCLMSSTWRCDSSCLM
AYNFFKPLIELLVDCAIRTARRSQRDAVVGPGPP
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mRNA from alignment at L-elsbetiae_contig14159:3693..4094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14159.3091.1 ID=mRNA_L-elsbetiae_contig14159.3091.1|Name=mRNA_L-elsbetiae_contig14159.3091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig14159:3693..4094+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCTCCCCCTCCTCAGAGCTGCCGCCGTCTTCCACGTCCATGAAGT TGTACGGCCCGGACATGCCTTCGATGTTGATGCGCTCGTCTCCAGAGCCG TCCACTGTCATTCTCGTCCCTGTCTTCTCGAACAGACGGAACGGATACTG CTGGTCAGCATCGATTTCCTGGACAACCTCTCCCACCTCTGCGCCCGCAG ATCTTCGATGTCGCTAAAGAGTGTCGGAGGCAGAGGCTTCTGCCTCAAAA GGTGCTGTTTGATGTCTTCGACTTGGAGGTGCGACAGCTCATGCTTAATG GCCTACAACTTCTTCAAGCCGCTGATCGAGTTGTTGGTAGATTGCGCCAT CAGGACCGCACGTCGTTCACAGCGCGACGCTGTTGTGGGCCCAGGTCCGC CG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14159:3693..4094+

>mRNA_L-elsbetiae_contig14159.3091.1 ID=mRNA_L-elsbetiae_contig14159.3091.1|Name=mRNA_L-elsbetiae_contig14159.3091.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig14159:3693..4094+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCCCCTCCCCCTCCTCAGAGCTGCCGCCGTCTTCCACGTCCATGAAGT
TGTACGGCCCGGACATGCCTTCGATGTTGATGCGCTCGTCTCCAGAGCCG
TCCACTGTCATTCTCGTCCCTGTCTTCTCGAACAGACGGAACGGATACTG
CTGGTCAGCATCGATTTCCTGGACAACCTCTCCCACCTCTGCGCCCGCAG
ATCTTCGATGTCGCTAAAGAGTGTCGGAGGCAGAGGCTTCTGCCTCAAAA
GGTGCTGTTTGATGTCTTCGACTTGGAGGTGCGACAGCTCATGCTTAATG
GCCTACAACTTCTTCAAGCCGCTGATCGAGTTGTTGGTAGATTGCGCCAT
CAGGACCGCACGTCGTTCACAGCGCGACGCTGTTGTGGGCCCAGGTCCGC
CGCTCCCCCTCCCCCTCCTCAGAGCTGCCGCCGTCTTCCACGTCCATGAA
GTTGTACGGCCCGGACATGCCTTCGATGTTGATGCGCTCGTCTCCAGAGC
CGTCCACTGTCATTCTCGTCCCTGTCTTCTCGAACAGACGGAACGGATAC
TGCTGGTCAGCATCGATTTCCTGGACAACCTCTCCCACCTCTGCGCCCGC
AGATCTTCGATGTCGCTAAAGAGTGTCGGAGGCAGAGGCTTCTGCCTCAA
AAGGTGCTGTTTGATGTCTTCGACTTGGAGGTGCGACAGCTCATGCTTAA
TGGCCTACAACTTCTTCAAGCCGCTGATCGAGTTGTTGGTAGATTGCGCC
ATCAGGACCGCACGTCGTTCACAGCGCGACGCTGTTGTGGGCCCAGGTCC
GCCG
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