mRNA_L-elsbetiae_contig14158.3090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14158.3090.1
Unique NamemRNA_L-elsbetiae_contig14158.3090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14158.3090.1 vs. uniprot
Match: A0A6H5L8S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.750e-28
Identity = 91/146 (62.33%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  139 KKWSWRYVNVEKKCLLVWDRRGGRLLRSIPLRDIESLLVLPDQEAPASLLEVYLSSPAPHANAGCRNSEISADDDTGVTGHLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEGARDVERVDGGVLVLQARSRRETLLWAKVLQ 576
            K W+WRYVNVEKK LLVWDRRGGRLLRSI LRDIESLLV+PD+ APAS+LEVY+SSP+   + G  N  ++ D         +G        XXXXXXXXXXXXXXXXXXX               VLVLQARSRRETLLWAKVLQ
Sbjct:  127 KAWAWRYVNVEKKKLLVWDRRGGRLLRSISLRDIESLLVIPDEGAPASILEVYISSPS--NSGGASNGTVTGDGSENSPIEGAGDEGEEEAQXXXXXXXXXXXXXXXXXXX---------------VLVLQARSRRETLLWAKVLQ 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14158.3090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8S0_9PHAE1.750e-2862.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14158contigL-elsbetiae_contig14158:2859..4614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size576
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14158.3090.1prot_L-elsbetiae_contig14158.3090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14158 3094..4570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.6985717-UTR-L-elsbetiae_contig14158:2858..30931622815562.6985717-UTR-L-elsbetiae_contig14158:2858..3093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14158 2859..3093 -
1691682961.315166-UTR-L-elsbetiae_contig14158:2858..30931691682961.315166-UTR-L-elsbetiae_contig14158:2858..3093Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14158 2859..3093 -
1622815562.740428-UTR-L-elsbetiae_contig14158:4570..46141622815562.740428-UTR-L-elsbetiae_contig14158:4570..4614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14158 4571..4614 -
1691682961.3476052-UTR-L-elsbetiae_contig14158:4570..46141691682961.3476052-UTR-L-elsbetiae_contig14158:4570..4614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14158 4571..4614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.7102482-CDS-L-elsbetiae_contig14158:3093..31671622815562.7102482-CDS-L-elsbetiae_contig14158:3093..3167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14158 3094..3167 -
1691682961.323792-CDS-L-elsbetiae_contig14158:3093..31671691682961.323792-CDS-L-elsbetiae_contig14158:3093..3167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14158 3094..3167 -
1622815562.722973-CDS-L-elsbetiae_contig14158:4347..45701622815562.722973-CDS-L-elsbetiae_contig14158:4347..4570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14158 4348..4570 -
1691682961.3385255-CDS-L-elsbetiae_contig14158:4347..45701691682961.3385255-CDS-L-elsbetiae_contig14158:4347..4570Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14158 4348..4570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14158.3090.1

>prot_L-elsbetiae_contig14158.3090.1 ID=prot_L-elsbetiae_contig14158.3090.1|Name=mRNA_L-elsbetiae_contig14158.3090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MRERRQRQRHQPGWTGPQQQQQRQQQEQQDQQEVVVAVRERGEEVSAGVG
PTRRAAAEVHPPQGHRVPAGAPRPGSPCQPSRGVPFFSGAARERRLQK*
back to top

mRNA from alignment at L-elsbetiae_contig14158:2859..4614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14158.3090.1 ID=mRNA_L-elsbetiae_contig14158.3090.1|Name=mRNA_L-elsbetiae_contig14158.3090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1756bp|location=Sequence derived from alignment at L-elsbetiae_contig14158:2859..4614- (Laminarionema elsbetiae ELsaHSoW15)
CAGAGAGATGGAGGAGGGCAGCGCGGAGCGGCGGACAGCGGAGAATGCGA
GAGCGAAGACAACGACAACGGCACCAGCCTGGATGGACAGGGCCACAACA
ACAACAACAACGACAGCAGCAAGAACAACAAGACCAACAAGAAGTGGTCG
TGGCGGTACGTGAACGTGGAGAAGAAGTGTCTGCTGGTGTGGGACCGACG
CGGCGGGCGGCTGCTGAGGTCCATCCCCCTCAGGGACATCGAGTCCCTGC
TGGTGCTCCCAGACCAGGTGAGGGGGGCAACCTACACATACATCCGTGCA
AGTGGTGCCGGCTGGAGGCCCGGAGGTGCACTCCCGTCGCTTGTCCATTT
CCCGCGCATCCACGGAACCCCATCGAGGGTAGGCTTGCGTAAACTATCCC
TGGCGCATCCACGGAACCCCTCATTTGAGGGCACACTTGGCTTAAACTGT
CCCTGGTGCATCCACGGAGCCCCTCTCGAGGGCACGCCTGGGGTAATATA
GAGGCCCCGCCGAATCCCTCAATCGCTCTCCCCCTCCTTTTGTGAAGCTA
TGTATGCCCCCTCTGTGCATGTTGTTGAAAGACCTATAGAAGCGGAAACT
AAATCATTTGACCAGTCAGTATGTATCAGTACTGAATGGTCTATTGGTCT
AATTTCCGCTTCTACAAAAGTTAGTCGTGGGTTCGAATCCCAGACTGAGC
ACTTTTTCTCTTGAGACTGGTCTAATGGTTTAATTTCCGCTTCTACAGAC
CTCCCCTCCCTGCTTTTCTTGTCTCTGCCTTAGATGACCCAAGGTACCAC
CCCCCCCCCTCCCTGGGCGTATTTTCAAAGCTCCACTACTCCGTAACGAA
GAGGGTGCCAGCACCAAACGACACCTTTTCGGACAGCCCTCGACCAGATC
TTTCCAACGCCAGCCCATTCCGGCACTGGCACTCTTCTTGCTGGGGAGGA
ATCAAGCTTTAAAAATCTGTCCAGAAGGGGTGGGGGGTGGTATCTTGTGT
TATCTACGGTACCCCATCGTCGTGCGCGGCTCTGCCTCGCTGCCCAGGCG
TCAACGCCGCGTCTTCCAACGCTGTGTGTGCGTGTGCCAGAGATTGTTGG
TCTGATTCTCCCCTCTCTGCTCCGTGCTTTCTCCTTCCCCGCTCTCGTGC
CTCTCGTACGTTGCTGCTGTCGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTACGGCTGCTGCTACGGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCG
CTGCTGCTGCTGCTGCTGCGGCCGCTGCTCCCCCCCCATGCTTTCCTTCT
CCGCTCCTGTTCCTCTCGTACGTTGCTGCTGCTGCTTCTGCTTCTTCTTC
TGCTTCTTCTGCTGCTTCTGCTGTTTCCACTGCTGCTGCTGCTTCCACTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGTCGTCTGTTGATCACCCCAGGAA
GCCCCTGCCAGCCTTCTCGAGGTGTACCTTTCTTCTCCGGCGCCGCACGC
GAACGCCGGCTGCAGAAATAGCGAAATCAGCGCCGACGACGACACCGGCG
TCACCGGCCATCTCAGCGGCGGCGGCGGCGGAAACGGTGGTCCCCGGGGG
GAAGAAGAGGAAGACGCGCGGCGGCAGCGGGAGCGGGAGCCGCGGCAGCA
AGGGGGCGGGGAGGGGGCCCGTGACGTAGAACGGGTGGACGGGGGGGTTC
TGGTTCTGCAGGCGAGGTCGCGTCGCGAGACTCTGCTCTGGGCGAAGGTG
CTGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14158:2859..4614-

>mRNA_L-elsbetiae_contig14158.3090.1 ID=mRNA_L-elsbetiae_contig14158.3090.1|Name=mRNA_L-elsbetiae_contig14158.3090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig14158:2859..4614- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGAGCGAAGACAACGACAACGGCACCAGCCTGGATGGACAGGGCC
ACAACAACAACAACAACGACAGCAGCAAGAACAACAAGACCAACAAGAAG
TGGTCGTGGCGGTACGTGAACGTGGAGAAGAAGTGTCTGCTGGTGTGGGA
CCGACGCGGCGGGCGGCTGCTGAGGTCCATCCCCCTCAGGGACATCGAGT
CCCTGCTGGTGCTCCCAGACCAGATGCGAGAGCGAAGACAACGACAACGG
CACCAGCCTGGATGGACAGGGCCACAACAACAACAACAACGACAGCAGCA
AGAACAACAAGACCAACAAGAAGTGGTCGTGGCGGTACGTGAACGTGGAG
AAGAAGTGTCTGCTGGTGTGGGACCGACGCGGCGGGCGGCTGCTGAGGTC
CATCCCCCTCAGGGACATCGAGTCCCTGCTGGTGCTCCCAGACCAGGAAG
CCCCTGCCAGCCTTCTCGAGGTGTACCTTTCTTCTCCGGCGCCGCACGCG
AACGCCGGCTGCAGAAATAGGAAGCCCCTGCCAGCCTTCTCGAGGTGTAC
CTTTCTTCTCCGGCGCCGCACGCGAACGCCGGCTGCAGAAATAG
back to top