mRNA_L-elsbetiae_contig14130.3083.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14130.3083.1
Unique NamemRNA_L-elsbetiae_contig14130.3083.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.830e-16
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGENPG G P Q+W  CLK++
Sbjct:   56 RQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 105
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.310e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  175 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 224
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.330e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  226 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 275
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.830e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  194 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 243
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGENPG G P Q+W  CLK++
Sbjct:  477 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 526
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.110e-15
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGENPG G P Q+W  CLK++
Sbjct:  175 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDD 224
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KLC4_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.130e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  316 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 365
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.560e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  500 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 549
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.630e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  589 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 638
[Close]
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.800e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:  335 RQRHLLFAGALARQPDGRLPKRLMFGTLMGGENPGGGRPPQDWERCLKEN 484
            RQR LLFAGA+ARQPDGRLPKRLMFG L+GGE+PG G P Q+W  CLK++
Sbjct:  918 RQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDD 967
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14130.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF72_9PHAE2.830e-1676.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE7.310e-1674.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE1.330e-1574.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE1.830e-1574.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE1.900e-1576.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4M0_9PHAE2.110e-1576.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLC4_9PHAE3.130e-1574.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE3.560e-1574.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ91_9PHAE3.630e-1574.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE3.800e-1574.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14130contigL-elsbetiae_contig14130:4246..4731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.764815-CDS-L-elsbetiae_contig14130:4245..47311622815561.764815-CDS-L-elsbetiae_contig14130:4245..4731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14130 4246..4731 +
1691682960.7526844-CDS-L-elsbetiae_contig14130:4245..47311691682960.7526844-CDS-L-elsbetiae_contig14130:4245..4731Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14130 4246..4731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14130.3083.1prot_L-elsbetiae_contig14130.3083.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14130 4246..4731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14130.3083.1

>prot_L-elsbetiae_contig14130.3083.1 ID=prot_L-elsbetiae_contig14130.3083.1|Name=mRNA_L-elsbetiae_contig14130.3083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
SSHLSLPSQCAVPTLYGGGIVHRTSGSEREGRRFGYCIFHEFLPSFHFHI
FVARSVRTEKGRLFVCAGISCYLKREEITQRVNELGKVPLHRPSRSEREG
RRFGDFTRRVLPAAAPALRRGSGKAAGRTTPKATDVWHTDGGGEPGRGAP
ATGLGEMLEGEP
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mRNA from alignment at L-elsbetiae_contig14130:4246..4731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14130.3083.1 ID=mRNA_L-elsbetiae_contig14130.3083.1|Name=mRNA_L-elsbetiae_contig14130.3083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig14130:4246..4731+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTCACCTATCGCTGCCTTCGCAATGTGCGGTTCCGACTCTCTACGG
CGGTGGTATCGTGCACCGTACAAGTGGATCTGAGCGGGAGGGGCGGCGAT
TTGGCTATTGTATTTTCCACGAGTTTTTGCCTTCTTTCCACTTTCATATT
TTCGTCGCGCGGTCAGTCAGGACAGAAAAAGGGCGTCTTTTCGTGTGTGC
CGGAATCAGCTGCTATTTAAAACGCGAGGAAATCACTCAGCGTGTGAACG
AATTAGGCAAGGTGCCATTGCACCGTCCAAGTCGCTCTGAGCGGGAGGGG
CGGCGATTTGGCGATTTTACACGACGTGTGCTTCCGGCAGCGGCACCTGC
TCTTCGCCGGGGCTCTGGCAAGGCAGCCGGACGGACGACTCCCAAAGCGA
CTGATGTTTGGCACACTGATGGGGGGGGAGAACCCGGGCGGGGGGCGCCC
GCCACAGGACTGGGAGAGATGCTTGAAGGAGAACCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14130:4246..4731+

>mRNA_L-elsbetiae_contig14130.3083.1 ID=mRNA_L-elsbetiae_contig14130.3083.1|Name=mRNA_L-elsbetiae_contig14130.3083.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig14130:4246..4731+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGTCACCTATCGCTGCCTTCGCAATGTGCGGTTCCGACTCTCTACGG
CGGTGGTATCGTGCACCGTACAAGTGGATCTGAGCGGGAGGGGCGGCGAT
TTGGCTATTGTATTTTCCACGAGTTTTTGCCTTCTTTCCACTTTCATATT
TTCGTCGCGCGGTCAGTCAGGACAGAAAAAGGGCGTCTTTTCGTGTGTGC
CGGAATCAGCTGCTATTTAAAACGCGAGGAAATCACTCAGCGTGTGAACG
AATTAGGCAAGGTGCCATTGCACCGTCCAAGTCGCTCTGAGCGGGAGGGG
CGGCGATTTGGCGATTTTACACGACGTGTGCTTCCGGCAGCGGCACCTGC
TCTTCGCCGGGGCTCTGGCAAGGCAGCCGGACGGACGACTCCCAAAGCGA
CTGATGTTTGGCACACTGATGGGGGGGGAGAACCCGGGCGGGGGGCGCCC
GCCACAGGACTGGGAGAGATGCTTGAAGGAGAACCTAGCAGTCACCTATC
GCTGCCTTCGCAATGTGCGGTTCCGACTCTCTACGGCGGTGGTATCGTGC
ACCGTACAAGTGGATCTGAGCGGGAGGGGCGGCGATTTGGCTATTGTATT
TTCCACGAGTTTTTGCCTTCTTTCCACTTTCATATTTTCGTCGCGCGGTC
AGTCAGGACAGAAAAAGGGCGTCTTTTCGTGTGTGCCGGAATCAGCTGCT
ATTTAAAACGCGAGGAAATCACTCAGCGTGTGAACGAATTAGGCAAGGTG
CCATTGCACCGTCCAAGTCGCTCTGAGCGGGAGGGGCGGCGATTTGGCGA
TTTTACACGACGTGTGCTTCCGGCAGCGGCACCTGCTCTTCGCCGGGGCT
CTGGCAAGGCAGCCGGACGGACGACTCCCAAAGCGACTGATGTTTGGCAC
ACTGATGGGGGGGGAGAACCCGGGCGGGGGGCGCCCGCCACAGGACTGGG
AGAGATGCTTGAAGGAGAACCT
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