mRNA_L-elsbetiae_contig1413.3081.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1413.3081.1
Unique NamemRNA_L-elsbetiae_contig1413.3081.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1413.3081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1413contigL-elsbetiae_contig1413:12519..13715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1413.3081.1prot_L-elsbetiae_contig1413.3081.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1413 12519..13715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.649979-CDS-L-elsbetiae_contig1413:12518..125971622815561.649979-CDS-L-elsbetiae_contig1413:12518..12597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 12519..12597 +
1691682960.687766-CDS-L-elsbetiae_contig1413:12518..125971691682960.687766-CDS-L-elsbetiae_contig1413:12518..12597Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 12519..12597 +
1622815561.6619837-CDS-L-elsbetiae_contig1413:12929..130011622815561.6619837-CDS-L-elsbetiae_contig1413:12929..13001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 12930..13001 +
1691682960.6992784-CDS-L-elsbetiae_contig1413:12929..130011691682960.6992784-CDS-L-elsbetiae_contig1413:12929..13001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 12930..13001 +
1622815561.6757345-CDS-L-elsbetiae_contig1413:13551..137151622815561.6757345-CDS-L-elsbetiae_contig1413:13551..13715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 13552..13715 +
1691682960.711223-CDS-L-elsbetiae_contig1413:13551..137151691682960.711223-CDS-L-elsbetiae_contig1413:13551..13715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1413 13552..13715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1413.3081.1

>prot_L-elsbetiae_contig1413.3081.1 ID=prot_L-elsbetiae_contig1413.3081.1|Name=mRNA_L-elsbetiae_contig1413.3081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
LAGLIPPELGKLAALKKLQLQWNMLTGSIPPELGYLAALKELYLADNTLS
GINPANARWSRCRVVLVCIMNTDELVLALTLAGSIPPELGNLAALKILDL
YRNQL
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mRNA from alignment at L-elsbetiae_contig1413:12519..13715+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1413.3081.1 ID=mRNA_L-elsbetiae_contig1413.3081.1|Name=mRNA_L-elsbetiae_contig1413.3081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1197bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:12519..13715+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCAGGTCTCATCCCGCCGGAGCTGGGGAAGCTCGCAGCACTGAAGAA
GCTCCAACTTCAGTGGAACATGCTAACTGGTGAGTGATTATGTTCAAGTT
TCAGGACGAATCTTAACCTAGAACGTTGCTGAAACACAAAAACCGCTAGT
TTACACTCCCTCGCCTGTAAGATTGTTGTAGCGGAGTGTCAGCTGCTTCA
GCTCGCTGAGAGCTCCCAGTGCCTCGGGAATAGGTCCTGCAAAAAATAGG
AGGCGTGGAAAACTAGATTTGTTTTTTAATATTCTGGAGTGTTGTCTCTC
CTTCCAGAGCATGTGTCCTGCGTACGCGTGGGTGAGAAGGTGTTGGTCTA
GAAACCGGGATATTTATTTCGTTTTCCCCCGCCAACTTCGTATCTTGTAT
TTCGCTTGCAGGTTCTATCCCCCCGGAGCTGGGATACCTCGCAGCGCTGA
AGGAGCTCTATCTTGCCGACAACACCCTCAGTGGTAAGTCATTGGATAAA
GTCCCACCAACGGCGTCGGCAAGTAGGCTTCTAGAATGAAGCGGAGCAAT
TTTTTCTTGCAGCGCTACACAGAAATTGTACTCGCTCGCCTCTTACCTGT
TGTACAGCCAAAGCGTTCTCAGCTTCGAGAAGGCTCCGAGCCCGTTGGGT
ATCGGCCCTACGAAAAGATTTGGGGTATCGGCAAGAAAATTTAATAGAAG
TTAAGGTTTCAACTGTCAGAAATGTGTCCTGCGTATGCGTGGGTAGGTGT
TCTAGATGCCGGCGGGGAGTTTTTTTGTTTTTCCCCATTCATATTTTATC
TTACGCTTGCAGGCCCCATCCCGCCGGAGCTTGGAAAACTCGCAGCACTG
ACGTACCTGGACCTTGCGCAAAATCAGCTAATTGATGAGTCATTGCAATT
GGTAAGTATGTTGCCTTCCTGATCAAACTTCAGGAATAAGCCCTGCCAAC
GCGTAGGTGAGTAGGTACGTCCGATGTTCTGGAAAGCTTCATTCATTTCA
TGATTAATAATTGCCTTCCCGATAAAGCTTCAGGAATAAATCCTGCCAAC
GCTAGGTGGTCTAGATGCCGGGTAGTTTTAGTTTGTATTATGAACACTGA
TGAACTCGTACTTGCGCTTACGCTTGCAGGTTCCATCCCACCGGAGCTGG
GAAACCTTGCAGCCCTCAAGATTCTCGACCTATATCGAAACCAGCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1413:12519..13715+

>mRNA_L-elsbetiae_contig1413.3081.1 ID=mRNA_L-elsbetiae_contig1413.3081.1|Name=mRNA_L-elsbetiae_contig1413.3081.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:12519..13715+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGCAGGTCTCATCCCGCCGGAGCTGGGGAAGCTCGCAGCACTGAAGAA
GCTCCAACTTCAGTGGAACATGCTAACTGCTTGCAGGTCTCATCCCGCCG
GAGCTGGGGAAGCTCGCAGCACTGAAGAAGCTCCAACTTCAGTGGAACAT
GCTAACTGGTTCTATCCCCCCGGAGCTGGGATACCTCGCAGCGCTGAAGG
AGCTCTATCTTGCCGACAACACCCTCAGTGGTTCTATCCCCCCGGAGCTG
GGATACCTCGCAGCGCTGAAGGAGCTCTATCTTGCCGACAACACCCTCAG
TGGAATAAATCCTGCCAACGCTAGGTGGTCTAGATGCCGGGTAGTTTTAG
TTTGTATTATGAACACTGATGAACTCGTACTTGCGCTTACGCTTGCAGGT
TCCATCCCACCGGAGCTGGGAAACCTTGCAGCCCTCAAGATTCTCGACCT
ATATCGAAACCAGCTTGAATAAATCCTGCCAACGCTAGGTGGTCTAGATG
CCGGGTAGTTTTAGTTTGTATTATGAACACTGATGAACTCGTACTTGCGC
TTACGCTTGCAGGTTCCATCCCACCGGAGCTGGGAAACCTTGCAGCCCTC
AAGATTCTCGACCTATATCGAAACCAGCTT
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