mRNA_L-elsbetiae_contig1413.3080.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1413.3080.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 432 bits (1112), Expect = 7.790e-139 Identity = 231/387 (59.69%), Postives = 275/387 (71.06%), Query Frame = 1 Query: 1 MRVPGAAIALVGSHVDNMKKEGLDADLAKKRLHE---------------VVRKFIVDKAANTLKGKNSRCIDTESPTTMDADHLRDGAQAVPLDDRLAQRSSSSKLSTEPLVLHDHVFEVSLNPASVRVLREWVVKAASGRDCPRGFSFPAVDQVVPNAWIKAFYVMDVVERTTPCVMWSEAVAKFSDAMSG----TDDPSKVLLRAMQHREAEGSALLLLADASAPGDTDMLHLDPSWLVELVRRLADHNLVDEDEKKQGIIKQQLHRYAKEQQTDFEPLWDMHGVYCKSGHLSQDYLRFLWTYRKIDPPGPAVDLTDIKFESIISTMVRLLVMYKARGEGDFVVPARLPEYGDQRVLPPDNIAEVVVMVECSFGQAYPPLGIVGR 1104 MRVPGAA+ALVGSHVD M+ E DA A+ LH VV KFI DKA N + ++ RCID ES M+ DHLRD D R+A RS SS+ + EPLVLH +VF+VSL P SV LR+W+VKAASGR+CP GF+FPAVDQ V AWI+A+ MDV++ T PCV+WS AV +F MSG D KVLLRAMQHREAEG LL LAD SAP +DMLHLDPSWL+ELVRRLADHNLVD+D+KK+G ++Q L YAK Q PL+D+H VYC+SG L++ YLRFLW +RKI+ PGP VDLTD +FESI+STM RLLVMY AR + VVPARL EYGDQR+ PD + +V+ +ECSFGQ YPP GIVGR Sbjct: 394 MRVPGAAVALVGSHVDQMESE--DARQAETHLHTGEASWFFRGRVPCSLVVSKFIKDKAGNASRRQSIRCIDAESTKPMEVDHLRD-------DGRMAPRSGSSRFTAEPLVLHGNVFKVSLAPTSVVELRQWIVKAASGRECPTGFNFPAVDQTVSKAWIEAYDAMDVLKGTAPCVLWSRAVEEFRRKMSGIPPVAGDAGKVLLRAMQHREAEGGVLLSLADDSAPVASDMLHLDPSWLIELVRRLADHNLVDKDKKKRGSLEQGLRVYAKRQGLAAAPLFDIHNVYCRSGRLNRAYLRFLWMHRKIEGPGPTVDLTDPEFESIVSTMERLLVMYTARDADNLVVPARLQEYGDQRI--PDRLTNMVLKIECSFGQVYPPPGIVGR 769
BLAST of mRNA_L-elsbetiae_contig1413.3080.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 188 bits (477), Expect = 3.600e-49 Identity = 113/306 (36.93%), Postives = 170/306 (55.56%), Query Frame = 1 Query: 274 STEPLVLHDHVFEVSLNPAS-VRVLREWVVKAASGRDCPRGFSFPAVDQVVPNAWIKAFYVMDVV--ERTTPCVMWSEAVAKFSDAMS---------------GTDDPSKVLLRAMQHREAEGSALLLLADASAPGDTDMLHLDPSWLVELVRRLADHNLVDEDEKKQGIIKQQLHRYAKEQQ---TDFEPLWDMHGVYCKSGHLSQDYLRFLWTYRKIDPPGP--AVDLTDIKFESIISTMVRLLVMYKARGEGD-----FVVPARLPEYGDQRVLPPD-NIAEVVVMVECSFGQAYPPLGIVGR 1104 ST PL+LH VF SL + + L +W++ A + FSFPAV ++P AW+ A ++ + E+ TP V+W +AV F +D + L AM+HREAEG +L L D S+P +DM+H+DP WL+ELVRR+ DHNLVD+ KKQ I Q+L Y + + + ++ L + H + + G L++DYLRFLW +RK++ G L F+S++ TM++ L +Y + GE +VPARLPE+G+ +L + EVVV F +++ P GI+GR Sbjct: 1467 STHPLILHPRVFCASLGLDNRIGRLSDWIIGVAPEKI---SFSFPAVATILPAAWVDAIAAVEALHKEKGTPYVLWGDAVRAFQRYFQEKHKEEGKEERNKPLSDEDAATNLKEAMKHREAEGGVILSLRDESSPAQSDMIHVDPRWLIELVRRVTDHNLVDK--KKQNKILQELLEYDRTRPDTLSGYKNLCETHACFIRQGRLNRDYLRFLWVHRKLEVEGDYAGAQLDKDAFDSMVDTMIKYLFIYPSHGECSNAEDCHIVPARLPEHGNDNILEESIGLGEVVVGKTAWFLRSHAPTGIIGR 1767
BLAST of mRNA_L-elsbetiae_contig1413.3080.1 vs. uniprot
Match: A0A6H5JR01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR01_9PHAE) HSP 1 Score: 165 bits (418), Expect = 4.650e-42 Identity = 102/287 (35.54%), Postives = 163/287 (56.79%), Query Frame = 1 Query: 277 TEPLVLHDHVFEVSLNPAS-VRVLREWVVKAASGRDCPRGFSFPAVDQVVPNAWIKAFYVMDVVERTTPCVMWSEAVAKFSDAMSGTDDPSKVLLRAMQHREAEGSALLLLADASAPGDTDMLHLDPSWLVELVRRLADHNLVDEDEKKQGIIKQQLHRYAKEQQ---TDFEPLWDMHGVYCKSGHLSQDYLRFLWTYRKIDPPG--PAVDLTDIKFESIISTMVRLLVMYKARGE-----GDFVVPARLPEYGDQRVLPPD-NIAEVVVMVECSFGQAYPPLGIVG 1101 T PL+LH VF SL + V L +W++ ++ + FSFPAV ++P+AW+ + +R E + + +S ++ S L AM+HREAEG +L L + S+P +DM+H+DP WL++LVRR+ DHNLVD+ K + I ++L Y + + + ++ L + H + + G L++ YLRFLW +RK++ G V L + F+S++ TM++ L +Y + GE G ++VPARLPE G VL + EVVV F +++ P GI+G Sbjct: 40 TLPLILHPRVFRASLGLDNRVNRLSDWIIDVSTEKI---SFSFPAVATILPSAWVLWGDAVKAFQRYFQEKHKEEREDERNKPLSD-EEASSNLKEAMKHREAEGGVILSLREESSPAQSDMIHVDPRWLIDLVRRVTDHNLVDK--KNEHEILKELLEYGRTRPDTLSGYKNLCETHTCFIRQGRLNRKYLRFLWVHRKLEVEGGYAGVQLENDTFDSMVDTMIKYLFIYPSHGECSKAEGFYIVPARLPEIGKDNVLEESIGLDEVVVGKTAWFLRSHAPTGIIG 320
BLAST of mRNA_L-elsbetiae_contig1413.3080.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.020e-12 Identity = 86/384 (22.40%), Postives = 167/384 (43.49%), Query Frame = 1 Query: 4 RVPGAAIALVGSHVDNMKKEGLDADLAKKRLHEVVRKFIVDKAANTLKGKNSRCIDTESPTTMDADH--LRDGAQAVPLDDRLAQRSSSSKLSTEPLVLHDHVFEVSLNPA---SVRVLREWVVKAASGRDCPRGFSFPAVDQVVPNAWIKAFYVMDVVERTT--------------------------PCVMWSEAVAKFSDA-----MSG--TDDPSKVLLRAMQHREAEGSALLLLADAS------APGDTDMLHLDPSWLVELVRRLADHNLVDEDEKKQGIIKQQLHRYAKEQQTDFEPLWDMHGVYCKSGHLSQDYLRFLWTYRKID------PPGPAVDLTDIKFESIISTMVRLLVMYKAR-GEGDFVVPARLPEY 1002 RVPG+ + L+G+H D+ A+ +K+ V F+ + K + I E D H ++D + PL +V+ + ++L+P+ + LRE + A G G+SFP+V+ VP + A ++ V R P V++ EA+++F + M G + ++V L A++ E +G+ LL AD A + ++H++P+W +L+RR+ D L+D + +Q + + R D L H + +G L++ Y+RFLW R ++ P +++++ +I+ +++ + M++ R E ++VP+ LP++ Sbjct: 165 RVPGSVVLLMGTHSDSFDSP---AECSKR-----VDCFVKGELLPLYKNFIMKRIGDECKAAADRGHAGVQDNRRYEPL----------------RVVVVKELLALNLSPSGGVTTAELREHIEGVAYG--VHDGYSFPSVNNEVPEPHLLAVATLEAVRRGVSLRGSGGEPAEVARRLNAGTKVGEGHPFVLFPEALSRFLEVAGEKPMFGGKATEGARVFLAAIKLHEVQGAILLTRADGGGEMEDMASEEHLVIHMNPAWFADLIRRIVDVRLLDPAQARQEKVADLIKRQPPASVGD---LSKQHHRFFLAGELNRRYMRFLWKDRDLELGPASPNTAPPLEMSEEDITTIVESLLDVRFMFRVRQNEDHYIVPSCLPDH 519 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1413.3080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1413.3080.1 >prot_L-elsbetiae_contig1413.3080.1 ID=prot_L-elsbetiae_contig1413.3080.1|Name=mRNA_L-elsbetiae_contig1413.3080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=368bp MRVPGAAIALVGSHVDNMKKEGLDADLAKKRLHEVVRKFIVDKAANTLKGback to top mRNA from alignment at L-elsbetiae_contig1413:5917..8109+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1413.3080.1 ID=mRNA_L-elsbetiae_contig1413.3080.1|Name=mRNA_L-elsbetiae_contig1413.3080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2193bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:5917..8109+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1413:5917..8109+ >mRNA_L-elsbetiae_contig1413.3080.1 ID=mRNA_L-elsbetiae_contig1413.3080.1|Name=mRNA_L-elsbetiae_contig1413.3080.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2208bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:5917..8109+ (Laminarionema elsbetiae ELsaHSoW15)back to top |