mRNA_L-elsbetiae_contig1413.3079.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 206 bits (523), Expect = 3.800e-59 Identity = 103/123 (83.74%), Postives = 108/123 (87.80%), Query Frame = 1 Query: 1 SGLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTGQPVPKGPDRTVGIEIT-DWRPLDEARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSKEVQSVVGNFTDPR 366 SG E ALGWWEDV+RFGEGKSN+LKMVLVGLA AGKTTIVRH TG+ VPK DRTVGIEIT DW+P DE LQVSVWDFAGQA YYSSHQLFLTKGALFLLVVDLHAFSKE+ S V NFTDPR Sbjct: 260 SGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMTGRSVPKRSDRTVGIEITTDWKPGDEVPLQVSVWDFAGQADYYSSHQLFLTKGALFLLVVDLHAFSKEIGSGVDNFTDPR 382
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: D8LK68_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK68_ECTSI) HSP 1 Score: 142 bits (357), Expect = 9.640e-37 Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTG-QPVPKGPDRTVGIEITDWRPLDEARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSKEVQSVVGNFTDPR 366 GL SA WW+ + RFGEG S++LKMVLVGLAEAGKTTIVRHFTG P K RT+G+E+++W+P L VS+WDF+GQ+ Y++SHQ+FLT+GALFLLVVDL ++ +S DPR Sbjct: 406 GLVSAGRWWDGIARFGEGTSSKLKMVLVGLAEAGKTTIVRHFTGGDPADK---RTIGVELSEWKPNKNLPLAVSLWDFSGQSDYHASHQIFLTEGALFLLVVDLFELGRDEKS--AGIPDPR 522
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE) HSP 1 Score: 108 bits (270), Expect = 4.970e-25 Identity = 60/125 (48.00%), Postives = 79/125 (63.20%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTG----QPVPKGPDRTVGIEITDWR----PLD-----EARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSKEVQS 339 GL A + +D+E FG SNRLK+VLVGL AGKT++ G +P+P +RTVG+EI D R P + A L V +WDFAGQ YY +HQ+FLT GALF+LVVD+ A+S++ S Sbjct: 26 GLAYAASFLKDLEDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLAPSKPLPSAKERTVGVEIRDIRLGSGPANARSGGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFAYSEDGHS 150
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.890e-23 Identity = 57/125 (45.60%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTG----QPVPKGPDRTVGIEITDWR----PLD-----EARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSKEVQS 339 G+ A + +D+ FG SNRLK+VLVGL AGKT++ G +P+P +RTVG+EI D + P + A L V +WDFAGQ YY +HQ+FLT GALF+LVVD+ A+S++ S Sbjct: 198 GMAYAARFLKDLNDFGRTSSNRLKVVLVGLGNAGKTSVAVRLEGLASSKPLPTAEERTVGVEIRDIQLAPGPANGGSRGNAELDVKLWDFAGQRAYYDTHQMFLTPGALFVLVVDIFAYSEDGHS 322
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.840e-22 Identity = 56/120 (46.67%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFT---GQPVPKGPDRTVGIEITDWR----PLDEA-----RLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSK 327 G+ A + D++ +G SNRLK+VLVGL EAGKT+I G PK +RTVG+EI D + P +E L VS+WDFAGQ YY +HQ+FLT GALF+LVVD+ +++ Sbjct: 334 GMAHAAVFLRDLDDYGRAWSNRLKVVLVGLGEAGKTSIATRLEDRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTYTE 453
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A6H5L2L4_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L4_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.050e-21 Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTGQ---PVPKGPDRTVGIEITDWR----PLDEA-----RLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAF 321 G+ + +D++ +G NRLK+VLVGL EAGKT+I G+ PK +RTVG+EI D + P +E L VS+WDFAGQ YY +HQ+FLT GALF+LVVD+ + Sbjct: 79 GMAHTAVFLKDLDDYGRAWYNRLKVVLVGLGEAGKTSIATRLEGRLGSSCPKPEERTVGVEIRDIKLGPGPTNEGIGPNDELDVSLWDFAGQRAYYDTHQMFLTPGALFVLVVDMFTY 196
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.680e-19 Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 1 Query: 4 GLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFT---GQPVPKGPDRTVGIEI---------TDWRPLDEARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSK 327 G+ A + D++ +G SNRLK+VLVGL AGKT+I G P +RTVG+EI T L VS+WDFAGQ YY +HQ+FLT+GALF+LVVD+ A+++ Sbjct: 39 GMAYAAVFLRDLDDYGRAWSNRLKVVLVGLGGAGKTSIATRLEDRLGGCCPNPEERTVGVEIRNIKLGPGATSEGSGPNVELDVSLWDFAGQRAYYDTHQMFLTQGALFVLVVDMFAYAE 158
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 8.020e-19 Identity = 56/119 (47.06%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 22 GWWEDVERFGEGKSNR-------LKMVLVGLAEAGKTTIVRHFT-GQPVPKGPDRTVGIE--ITDWRPLDEARLQVSVWDFAGQAGYYSSHQLFLTKGALFLLVVDLHAFSKEVQSVVG 348 G W+ V F EG S LK+VLVG AGKTT+ R G+ P RT GI+ I W P + L+V +WDFAG Y+S+HQ+FLT GAL LLVVDLH F ++V S G Sbjct: 165 GGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLPPRTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQMFLTDGALHLLVVDLHKFDRDVLSRGG 283
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A822BCY3_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822BCY3_9BILA) HSP 1 Score: 77.0 bits (188), Expect = 2.120e-14 Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 67 RLKMVLVGLAEAGKTTIVRHFTGQPVPKGPDRTVGIEITDWR-PLDEAR--LQVSVWDFAGQAGYYSSHQLFLTKGALFLLV 303 R K++LVGL AGKT++VR F K P+ T GI+I W+ PL++ L+ SVWDFAGQ+ YY +HQ FL K A+++LV Sbjct: 130 RTKLMLVGLGGAGKTSLVRAFLKSHSDKPPEITDGIDIVKWKVPLNQPDDFLEFSVWDFAGQSVYYHTHQFFLAKKAVYVLV 211
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Match: A0A818UFR4_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818UFR4_9BILA) HSP 1 Score: 77.0 bits (188), Expect = 5.050e-14 Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 67 RLKMVLVGLAEAGKTTIVRHFTGQPVPKGPDRTVGIEITDWR-PLDEAR--LQVSVWDFAGQAGYYSSHQLFLTKGALFLLV 303 R K++LVGL AGKT++VR F K P+ T GI+I W+ PL++ L+ SVWDFAGQ+ YY +HQ FL K A+++LV Sbjct: 112 RTKLMLVGLGGAGKTSLVRAFLKSHSDKPPEITDGIDIVKWKVPLNQPDDFLEFSVWDFAGQSVYYHTHQFFLAKKAVYVLV 193 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1413.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1413.3079.1 >prot_L-elsbetiae_contig1413.3079.1 ID=prot_L-elsbetiae_contig1413.3079.1|Name=mRNA_L-elsbetiae_contig1413.3079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp SGLESALGWWEDVERFGEGKSNRLKMVLVGLAEAGKTTIVRHFTGQPVPKback to top mRNA from alignment at L-elsbetiae_contig1413:5518..5883+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1413.3079.1 ID=mRNA_L-elsbetiae_contig1413.3079.1|Name=mRNA_L-elsbetiae_contig1413.3079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:5518..5883+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1413:5518..5883+ >mRNA_L-elsbetiae_contig1413.3079.1 ID=mRNA_L-elsbetiae_contig1413.3079.1|Name=mRNA_L-elsbetiae_contig1413.3079.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1413:5518..5883+ (Laminarionema elsbetiae ELsaHSoW15)back to top |