mRNA_L-elsbetiae_contig14129.3078.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14129.3078.1
Unique NamemRNA_L-elsbetiae_contig14129.3078.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14129.3078.1 vs. uniprot
Match: A0A6H5JDQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ5_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 8.440e-47
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKTVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPTKEVSKNGFAFRHPDAPPAFDD 261
            MAKSIRSKVKKRNRTEMRK VGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPP+KEVSK+GF+FRHPDAPP FDD
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPPFDD 87
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BLAST of mRNA_L-elsbetiae_contig14129.3078.1 vs. uniprot
Match: D7G0M3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M3_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.040e-46
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKTVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPTKEVSKNGFAFRHPDAPPAFDD 261
            MAKSIRSKVKKRNRTEMRK VGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPP+KEVSK+GF+FRHPDAPP FDD
Sbjct:    1 MAKSIRSKVKKRNRTEMRKNVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPSKEVSKSGFSFRHPDAPPLFDD 87
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BLAST of mRNA_L-elsbetiae_contig14129.3078.1 vs. uniprot
Match: A0A835Z2D3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2D3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.400e-22
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MAKSIRSKVKKRNRTEMRKTVGDPHQRKLQARCTAKIQKSVAFSAGESVTKLKGMLTAAQAANPPTKEVSKNGFAFRHPDAPP 249
            MAKSIRSKVKKRNR +MRK  G+PH +++QA+CTA++Q++V + +G  + KLKG+L  AQA NP   EVSK+   F+HP A P
Sbjct:    1 MAKSIRSKVKKRNRADMRKQYGEPHAQQIQAKCTARLQETVQYHSGPGINKLKGLLNKAQAENPLQPEVSKHSHTFKHPYAKP 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14129.3078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDQ5_9PHAE8.440e-4794.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0M3_ECTSI1.040e-4694.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z2D3_9STRA9.400e-2256.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14129contigL-elsbetiae_contig14129:2957..4638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUncharacterised protein family UPF0642
Ec32 orthologEc-07_001560.1
Exons2
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.5146148-CDS-L-elsbetiae_contig14129:2956..30921622815561.5146148-CDS-L-elsbetiae_contig14129:2956..3092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14129 2957..3092 +
1691682960.6051593-CDS-L-elsbetiae_contig14129:2956..30921691682960.6051593-CDS-L-elsbetiae_contig14129:2956..3092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14129 2957..3092 +
1622815561.525005-CDS-L-elsbetiae_contig14129:4513..46381622815561.525005-CDS-L-elsbetiae_contig14129:4513..4638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14129 4514..4638 +
1691682960.6158986-CDS-L-elsbetiae_contig14129:4513..46381691682960.6158986-CDS-L-elsbetiae_contig14129:4513..4638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14129 4514..4638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14129.3078.1prot_L-elsbetiae_contig14129.3078.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14129 2957..4638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14129.3078.1

>prot_L-elsbetiae_contig14129.3078.1 ID=prot_L-elsbetiae_contig14129.3078.1|Name=mRNA_L-elsbetiae_contig14129.3078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MAKSIRSKVKKRNRTEMRKTVGDPHQRKLQARCTAKIQKSVAFSAGESVT
KLKGMLTAAQAANPPTKEVSKNGFAFRHPDAPPAFDD
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mRNA from alignment at L-elsbetiae_contig14129:2957..4638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14129.3078.1 ID=mRNA_L-elsbetiae_contig14129.3078.1|Name=mRNA_L-elsbetiae_contig14129.3078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1682bp|location=Sequence derived from alignment at L-elsbetiae_contig14129:2957..4638+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGAGTATCCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGAAAAACCGTCGGCGACCCGCACCAGCGGAAGCTGCAGGCGCGCTGCA
CCGCCAAGATACAGAAGTCCGTCGCCTTCAGTGCGGGTGAGTTTTTTTTA
TGTTATGTATATATGTATCCGTCTGTCTTATGTATGTATATTGCCCTCTT
TTTTTCGTCCTCGCGTTTGCACTGCACTGCACCGCACCCGCGGGGAGGGG
CTGGGGAGGCTAAACCTTCCGGTTCATGTTGACGGTTTTCCACTGAATGG
CACGGGTAAATTGTGGTTGCGTGTGTATGGTGTGGGTACATACAGCAGTG
GTATATTATACAACCGGCCCGCTCAAGAGAAACTGAGATTTCCAGGAAAT
TTCGGCCGAGGCTGGGTTTCTAATGCCAGAGGCCAGAGGGTATTTATCGC
CGTATTTTCACACAGCATACACCCGGGGGCAAGTTGCAGGGGGCTCCGCG
AAATGAAAATGGTCACCGGAGTCCACGCAGGCGGGCGAAATTGTCTTCCA
GCCGCCAGCCTTTTTTTTTCGCTGAGCTCAGCCGAGTCACCACCTTTCAG
CACAACCATACCCCTGTCACAGGTCGCAGCTTGCTCTAAATTTGCAGGGG
GTCTCATACATGTCCTTTTCGACGTCCGCAAGTAGTTTGCATGCCTTTGT
TTTGTGCTGAACTCGAGAGATGCTGCGTCGTCGCGACTGGAAGAGGCCAG
TTTGCTGCTGCTTTTTGGCTCAATGTTTGCCCCTCAGCAGCAAGCTGTCG
GCCGTCAGCGGAGTTCACCAAATCATTCGGTGTCTGGGCATAGTGGAGGC
ACATACGTATAGAGTCGTTTCAAGGTTGGAGTAATTTTGGGTCCCAGGCT
TGACGGCCACACCAGCGAACACCCAAAAGTCACCTCTCTTCACAGAAGGG
AAGCAAACCGCGCACCATGAATCTTCCTCCAATGATGTTGATTATTTCAT
TATTTCCTCAAAAAATCTCCCCGTTTTGAACCTTTATCGCTGTATCGGCA
GCCGAAAAAATGCTCCAAAAACCTTTACGATGGTACCAGGCGGTAGAGAA
ATCCACACAGATTCCAAGAAGGTTTAGGATTTTGGATCGCAACTACAGCC
GGAGCTATTACGAAGTGACTGCCCAGCCCAATATGGCCAAGCGGGGGCAG
CGGAGGCTCCGAAATTCCGGCGCTCGTGAACAAAAGATGCCAAAAATCGC
GATGCGGGGAGCCCCCTGCAGCCCGGAGTGGAGTAAGCTGCAGGGCGGGC
TTCATATGTGTACCTAACGTGCGCAGGCACGTGGCGTGGTAAATAATATC
GTGCCGTGGCGGTGGCGGCGTTGTGTCACAGGTTTTATCGGGGTGAAAAA
AGCCGAGCCGAGGAGGGGGGGGGGGGGGGGGGCTAGGCGCGAAAACACAC
CATTTTTGTTTTGTGTGTCCTATTGGATGTCCCTCTTGCTCTGTCTTCTT
AGATATAGCCCCTGCGCCACACGCACGCACGCACGCTTTCGACGCTCTGG
CTGACAGGCGAGAGCGTGACGAAGCTCAAGGGCATGCTGACCGCAGCCCA
GGCGGCCAACCCCCCCACAAAGGAGGTCTCCAAGAACGGCTTCGCCTTCC
GCCACCCGGACGCGCCCCCTGCTTTCGATGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14129:2957..4638+

>mRNA_L-elsbetiae_contig14129.3078.1 ID=mRNA_L-elsbetiae_contig14129.3078.1|Name=mRNA_L-elsbetiae_contig14129.3078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig14129:2957..4638+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGAGTATCCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGAT
GCGAAAAACCGTCGGCGACCCGCACCAGCGGAAGCTGCAGGCGCGCTGCA
CCGCCAAGATACAGAAGTCCGTCGCCTTCAGTGCGGATGGCGAAGAGTAT
CCGGTCGAAGGTGAAGAAGAGGAACAGGACGGAGATGCGAAAAACCGTCG
GCGACCCGCACCAGCGGAAGCTGCAGGCGCGCTGCACCGCCAAGATACAG
AAGTCCGTCGCCTTCAGTGCGGGCGAGAGCGTGACGAAGCTCAAGGGCAT
GCTGACCGCAGCCCAGGCGGCCAACCCCCCCACAAAGGAGGTCTCCAAGA
ACGGCTTCGCCTTCCGCCACCCGGACGCGCCCCCTGCTTTCGATGACGCG
AGAGCGTGACGAAGCTCAAGGGCATGCTGACCGCAGCCCAGGCGGCCAAC
CCCCCCACAAAGGAGGTCTCCAAGAACGGCTTCGCCTTCCGCCACCCGGA
CGCGCCCCCTGCTTTCGATGAC
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