mRNA_L-elsbetiae_contig14121.3072.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14121.3072.1
Unique NamemRNA_L-elsbetiae_contig14121.3072.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14121.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14121contigL-elsbetiae_contig14121:1263..1800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14121.3072.1prot_L-elsbetiae_contig14121.3072.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14121 1327..1650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.127512-UTR-L-elsbetiae_contig14121:1262..13261622815561.127512-UTR-L-elsbetiae_contig14121:1262..1326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14121 1263..1326 +
1691682960.4195414-UTR-L-elsbetiae_contig14121:1262..13261691682960.4195414-UTR-L-elsbetiae_contig14121:1262..1326Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14121 1263..1326 +
1622815561.1582193-UTR-L-elsbetiae_contig14121:1650..18001622815561.1582193-UTR-L-elsbetiae_contig14121:1650..1800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14121 1651..1800 +
1691682960.4374988-UTR-L-elsbetiae_contig14121:1650..18001691682960.4374988-UTR-L-elsbetiae_contig14121:1650..1800Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14121 1651..1800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815561.1435797-CDS-L-elsbetiae_contig14121:1326..16501622815561.1435797-CDS-L-elsbetiae_contig14121:1326..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14121 1327..1650 +
1691682960.428496-CDS-L-elsbetiae_contig14121:1326..16501691682960.428496-CDS-L-elsbetiae_contig14121:1326..1650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14121 1327..1650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14121.3072.1

>prot_L-elsbetiae_contig14121.3072.1 ID=prot_L-elsbetiae_contig14121.3072.1|Name=mRNA_L-elsbetiae_contig14121.3072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MYLLLYSRSIYLVPKHPWGPVVTITQGTLDAAEETHCVGVLTPNLFPSAG
VCCFVGGPLRCKTEQNTFEAFLWANTHRGHIDIYQVVVDLSWLTAHTATL
ASAAEAE*
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mRNA from alignment at L-elsbetiae_contig14121:1263..1800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14121.3072.1 ID=mRNA_L-elsbetiae_contig14121.3072.1|Name=mRNA_L-elsbetiae_contig14121.3072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=538bp|location=Sequence derived from alignment at L-elsbetiae_contig14121:1263..1800+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCATTTGTTGTTTCACATTAGCCATGTGCTTGTTGTTGTTTTAGTTGT
TTCTAACGTCAGCTATGTACTTGTTGTTGTACTCTCGAAGTATATATTTA
GTCCCAAAACACCCATGGGGCCCCGTGGTCACAATAACACAGGGCACACT
CGACGCCGCGGAAGAAACACATTGCGTAGGTGTGCTGACGCCCAATCTCT
TTCCCTCCGCCGGCGTCTGCTGCTTCGTGGGCGGGCCTCTGAGATGTAAA
ACAGAGCAAAACACATTCGAGGCGTTTCTCTGGGCAAACACCCACCGTGG
GCACATTGATATATACCAGGTAGTAGTAGATTTATCTTGGTTGACTGCAC
ACACCGCAACACTCGCCAGTGCAGCAGAGGCAGAGTAGCCGCGAAAGCTT
CCAGTTGCAAATTAGATCAGCTAGCCTAGAGCGTTATTTTATACACACAC
ACGGCAGCAGGTCCCTCAAATAGTCTCCTTGTTTTCGGTGTTGACGAGGC
CTTCGAAAGGAATTTTTCCGAGACGCCGCCTTTCTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14121:1263..1800+

>mRNA_L-elsbetiae_contig14121.3072.1 ID=mRNA_L-elsbetiae_contig14121.3072.1|Name=mRNA_L-elsbetiae_contig14121.3072.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig14121:1263..1800+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTTGTTGTTGTACTCTCGAAGTATATATTTAGTCCCAAAACACCC
ATGGGGCCCCGTGGTCACAATAACACAGGGCACACTCGACGCCGCGGAAG
AAACACATTGCGTAGGTGTGCTGACGCCCAATCTCTTTCCCTCCGCCGGC
GTCTGCTGCTTCGTGGGCGGGCCTCTGAGATGTAAAACAGAGCAAAACAC
ATTCGAGGCGTTTCTCTGGGCAAACACCCACCGTGGGCACATTGATATAT
ACCAGGTAGTAGTAGATTTATCTTGGTTGACTGCACACACCGCAACACTC
GCCAGTGCAGCAGAGGCAGAGTAGATGTACTTGTTGTTGTACTCTCGAAG
TATATATTTAGTCCCAAAACACCCATGGGGCCCCGTGGTCACAATAACAC
AGGGCACACTCGACGCCGCGGAAGAAACACATTGCGTAGGTGTGCTGACG
CCCAATCTCTTTCCCTCCGCCGGCGTCTGCTGCTTCGTGGGCGGGCCTCT
GAGATGTAAAACAGAGCAAAACACATTCGAGGCGTTTCTCTGGGCAAACA
CCCACCGTGGGCACATTGATATATACCAGGTAGTAGTAGATTTATCTTGG
TTGACTGCACACACCGCAACACTCGCCAGTGCAGCAGAGGCAGAGTAG
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