mRNA_L-elsbetiae_contig14115.3069.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14115.3069.1
Unique NamemRNA_L-elsbetiae_contig14115.3069.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.930e-31
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDL 177
            GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRL+QRIPEISEVVQSIPNGP+L
Sbjct:  143 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLMQRIPEISEVVQSIPNGPEL 201
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.290e-30
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNVRVVEIDGPVVRLEL+GACGSCPSSTMTMKMGLERRL+++IPEISEVVQS+P GP LN
Sbjct:   48 GNVRVVEIDGPVVRLELQGACGSCPSSTMTMKMGLERRLIEKIPEISEVVQSMPEGPQLN 107
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A7R9U202_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U202_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.900e-26
Identity = 47/60 (78.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNV V EIDGP+VRLEL+GACG+CPSSTMTMKMGLERRL +RIPEISEVVQ++P+ P+L+
Sbjct:  112 GNVAVAEIDGPIVRLELQGACGTCPSSTMTMKMGLERRLKERIPEISEVVQAVPDAPELS 171
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A7S1D6Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6Z8_CYCTE)

HSP 1 Score: 102 bits (254), Expect = 1.900e-25
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDL 177
            GNV++ EIDGPVVRL+LEGACG+CPSST TMKMGLERRL +RIPEI EV+Q++P GPDL
Sbjct:  111 GNVKIQEIDGPVVRLQLEGACGTCPSSTQTMKMGLERRLRERIPEIQEVIQAMPQGPDL 169
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A4D9D2Y8_9STRA (NifU domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2Y8_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.840e-25
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNV V EIDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  115 GNVVVSEIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 174
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: F0Y565_AURAN (NifU domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y565_AURAN)

HSP 1 Score: 97.1 bits (240), Expect = 9.790e-25
Identity = 44/60 (73.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNVR+  I+GPVV+LELEGACG+CPSSTMTMKMGLERRL + IPEIS+VVQ +P+ PD++
Sbjct:   26 GNVRIAGIEGPVVKLELEGACGTCPSSTMTMKMGLERRLKEAIPEISDVVQYLPDTPDMD 85
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.040e-24
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDL 177
            GNV + EIDGPVVRLEL+GACG+CPSST TMKMGLER+L ++IPEI EVVQS+P GP+L
Sbjct:   50 GNVAISEIDGPVVRLELQGACGTCPSSTQTMKMGLERKLREKIPEIQEVVQSMPEGPEL 108
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BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: W7TNI1_9STRA (Nifu like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNI1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.330e-24
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNV V +IDGPVV+LEL+GACGSCPSSTMTMKMGLERRL ++IPEISEV+Q++P GP L+
Sbjct:  112 GNVVVSDIDGPVVKLELQGACGSCPSSTMTMKMGLERRLKEKIPEISEVIQAMPEGPALS 171
[Close]
BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-24
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDL 177
            GNV + EIDGPVVRLEL+G CG+CPSST TMKMGLER+L++RIPEI EVVQ++P+ PDL
Sbjct:   95 GNVAISEIDGPVVRLELQGECGTCPSSTQTMKMGLERKLMERIPEIQEVVQALPDSPDL 153
[Close]
BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Match: B8BR62_THAPS (NifU like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR62_THAPS)

HSP 1 Score: 98.6 bits (244), Expect = 5.200e-24
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    1 GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVVQSIPNGPDLN 180
            GNV + EIDGP+V+LEL+GACG+CPSST TMKMGLER+L +RIPEI EV+Q++P+ PDLN
Sbjct:  105 GNVAISEIDGPIVKLELQGACGTCPSSTQTMKMGLERKLRERIPEIQEVIQALPDTPDLN 164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14115.3069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE2.930e-3196.61NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z016_9STRA2.290e-3088.33NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9U202_9STRA4.900e-2678.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1D6Z8_CYCTE1.900e-2577.97Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A4D9D2Y8_9STRA8.840e-2578.33NifU domain-containing protein n=1 Tax=Nannochloro... [more]
F0Y565_AURAN9.790e-2573.33NifU domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1H4I0_9STRA1.040e-2476.27Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
W7TNI1_9STRA2.330e-2476.67Nifu like protein n=1 Tax=Nannochloropsis gaditana... [more]
K0SKZ0_THAOC4.200e-2474.58NifU domain-containing protein n=1 Tax=Thalassiosi... [more]
B8BR62_THAPS5.200e-2471.67NifU like protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14115contigL-elsbetiae_contig14115:4032..4211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue4.4e-25
Seed eggNOG ortholog2880.D7FRC2
Preferred nameNFU3
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
EC6.1.1.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Ec32 ortholog descriptionNifU-like protein 2, chloroplast precursor (AtCNfu2) (AtCnfU-V)
Ec32 orthologEc-26_002610.1
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.8588006-CDS-L-elsbetiae_contig14115:4031..42111622815560.8588006-CDS-L-elsbetiae_contig14115:4031..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14115 4032..4211 +
1691682960.2493684-CDS-L-elsbetiae_contig14115:4031..42111691682960.2493684-CDS-L-elsbetiae_contig14115:4031..4211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14115 4032..4211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14115.3069.1prot_L-elsbetiae_contig14115.3069.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14115 4032..4211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14115.3069.1

>prot_L-elsbetiae_contig14115.3069.1 ID=prot_L-elsbetiae_contig14115.3069.1|Name=mRNA_L-elsbetiae_contig14115.3069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
GNVRVVEIDGPVVRLELEGACGSCPSSTMTMKMGLERRLVQRIPEISEVV
QSIPNGPDLN
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mRNA from alignment at L-elsbetiae_contig14115:4032..4211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14115.3069.1 ID=mRNA_L-elsbetiae_contig14115.3069.1|Name=mRNA_L-elsbetiae_contig14115.3069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig14115:4032..4211+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAACGTGCGTGTGGTGGAGATCGATGGACCGGTGGTGCGTCTGGAGCT
GGAGGGCGCGTGCGGCAGCTGCCCTTCGAGCACGATGACCATGAAGATGG
GGCTGGAGAGGCGCCTGGTGCAGCGCATCCCGGAGATCAGCGAGGTGGTG
CAATCCATCCCCAACGGACCGGACTTGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14115:4032..4211+

>mRNA_L-elsbetiae_contig14115.3069.1 ID=mRNA_L-elsbetiae_contig14115.3069.1|Name=mRNA_L-elsbetiae_contig14115.3069.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig14115:4032..4211+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAACGTGCGTGTGGTGGAGATCGATGGACCGGTGGTGCGTCTGGAGCT
GGAGGGCGCGTGCGGCAGCTGCCCTTCGAGCACGATGACCATGAAGATGG
GGCTGGAGAGGCGCCTGGTGCAGCGCATCCCGGAGATCAGCGAGGTGGTG
CAATCCATCCCCAACGGACCGGACTTGAACGGGAACGTGCGTGTGGTGGA
GATCGATGGACCGGTGGTGCGTCTGGAGCTGGAGGGCGCGTGCGGCAGCT
GCCCTTCGAGCACGATGACCATGAAGATGGGGCTGGAGAGGCGCCTGGTG
CAGCGCATCCCGGAGATCAGCGAGGTGGTGCAATCCATCCCCAACGGACC
GGACTTGAAC
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