mRNA_L-elsbetiae_contig14107.3064.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14107.3064.1
Unique NamemRNA_L-elsbetiae_contig14107.3064.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14107.3064.1 vs. uniprot
Match: D7FKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.070e-93
Identity = 160/223 (71.75%), Postives = 183/223 (82.06%), Query Frame = 1 
Query:    1 QVISAPISQYDIENGRSACTCICLEAAVQTLREFADG-AWAGTPDHVVNYVTGGVSSYEAVAAAGTLSVEHTSVAEILATVARYRDALQPATAQATHQGLLGSDTSIASILREIGGARQEKNKPVAVAVTKPPETVVCFLPPERNP----ATAGAPSS--WLLFDSHPRPQLGLVGASVRSFAGEDALIEALNDIFPAFDLGAEDNVMASMYNMFDCVPLTLK 648
            QV+SA ISQYD++NGRS+CTCICLEA++  L    DG AWAG+PD V N V  GV+ YEAVAA GTL+VEHTSVAEILATVARY DALQPAT + THQGLLGSDTSIA +L EI G R+++++PVAV +TKPPETVVCFLP E       AT GAPS+  WLLFDSHPRPQ GLVGASVR FA E+AL+EALNDIFPA DLG  D+VM+SMYNMFDCVPL+LK
Sbjct:   14 QVVSASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETVVCFLPAESQAEGGAATTGAPSTRQWLLFDSHPRPQHGLVGASVRCFAAEEALVEALNDIFPAVDLGT-DSVMSSMYNMFDCVPLSLK 235
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BLAST of mRNA_L-elsbetiae_contig14107.3064.1 vs. uniprot
Match: K0R0Z2_THAOC (UBA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Z2_THAOC)

HSP 1 Score: 90.1 bits (222), Expect = 4.910e-16
Identity = 76/223 (34.08%), Postives = 113/223 (50.67%), Query Frame = 1 
Query:    1 QVISAPISQYDIENGRSACTCICLEAAVQTLREFADGAW-AGTPDHVVNYVTGGVSSYEAVAAAGTLSVEHTSVAEILATV---ARYRDALQPAT--AQATHQGLLGS----DTSIASILREIGGARQEKNKPVAVAVTKPPETVVCFLPPERNPATAGAPSSWLLFDSHPRPQLGLVGASVRSFAGEDALIEALNDIFPAFDLGAE-DNVMASMYNMFDCVP 636
            +++ + +SQY   +G+SACT I L  AV     F +G   A T +++ + V  G+  Y  + AA   S EH+SV E+LA V   A + + L P T    +  QGLL +       +  +L +        N  VA  +TKPPET++  LPP      +G P  ++L DSHPRP L   G+     +  D L+E+   +F   +LG +   +MA MYN FD  P
Sbjct:   77 RLVHSSLSQYSDPSGKSACTSIALNLAVN----FLNGEQTAVTAEYLGSSVLEGIQMYSELHAASGAS-EHSSVEELLAAVNLSAVHSEKLAPMTMLGGSPRQGLLSNARDNPMGLDVVLSQCQRDAAHVNSYVAAVITKPPETILVLLPPRGQ---SGLP--YILVDSHPRPNLCASGSYALLNSDFDGLLESSRQVFSPTELGPDVPELMAMMYNSFDVYP 289
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BLAST of mRNA_L-elsbetiae_contig14107.3064.1 vs. uniprot
Match: A0A7S2UJ74_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ74_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-12
Identity = 75/229 (32.75%), Postives = 99/229 (43.23%), Query Frame = 1 
Query:    4 VISAPISQYDIENGRSACTCICLEAAVQTLREFA----DGAWAGTPDHVVNYVTGGVSSYEAV----AAAGTL---SVEHTSVAEILATVARYRDALQPATAQATHQGLLGSDT-SIASILREIGGARQEKNKPV-----AVAVTKPPETVVCFLPPERNPATAGAPSSWLLFDSHPRPQLGLVGASVRSFAGEDALIEALNDIFPAFDLGAE-DNVMASMYNMFDCVP 636
            +I+   SQY I+NGRSACTCI L  A   L E +    D     TP  +   +  GV  Y  +    A+ G     +VEH S  E+L  V         A  +   QG++  D        R++   R +  K V     AV +TK PETVV  L               LL DSHPRP+L   G+     A  D+L   L  +FP   + ++    MA MYN FD  P
Sbjct:   89 MINCDASQYTIQNGRSACTCIALAGANAFLSEMSKPDPDPFEIITPAFLQRVLARGVWVYHQLMQKEASTGNSEKSNVEHKSAEEVLLAVPDTTFGSMTAQGRTVVQGIIDDDMFHPMGFRRKLASLRDDMAKTVRSSWMAVVITKTPETVVVCLSDN---------DECLLLDSHPRPELQATGSYAMMHADLDSLCLTLFKLFPPVHMTSDISETMAMMYNSFDLYP 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14107.3064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKS0_ECTSI1.070e-9371.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0R0Z2_THAOC4.910e-1634.08UBA domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2UJ74_9STRA1.990e-1232.75Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14107contigL-elsbetiae_contig14107:525..3846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score304.3
Seed ortholog evalue4.6e-80
Seed eggNOG ortholog2880.D7FKS0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3UP@1,2SAUQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001890.1
Exons4
Model size2369
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14107.3064.1prot_L-elsbetiae_contig14107.3064.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14107 2240..3846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.1254818-UTR-L-elsbetiae_contig14107:524..22391622815560.1254818-UTR-L-elsbetiae_contig14107:524..2239Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14107 525..2239 -
1691682959.7789543-UTR-L-elsbetiae_contig14107:524..22391691682959.7789543-UTR-L-elsbetiae_contig14107:524..2239Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14107 525..2239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.139338-CDS-L-elsbetiae_contig14107:2239..24911622815560.139338-CDS-L-elsbetiae_contig14107:2239..2491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 2240..2491 -
1691682959.789265-CDS-L-elsbetiae_contig14107:2239..24911691682959.789265-CDS-L-elsbetiae_contig14107:2239..2491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 2240..2491 -
1622815560.1505165-CDS-L-elsbetiae_contig14107:3061..32181622815560.1505165-CDS-L-elsbetiae_contig14107:3061..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3062..3218 -
1691682959.802753-CDS-L-elsbetiae_contig14107:3061..32181691682959.802753-CDS-L-elsbetiae_contig14107:3061..3218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3062..3218 -
1622815560.161626-CDS-L-elsbetiae_contig14107:3393..34971622815560.161626-CDS-L-elsbetiae_contig14107:3393..3497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3394..3497 -
1691682959.812684-CDS-L-elsbetiae_contig14107:3393..34971691682959.812684-CDS-L-elsbetiae_contig14107:3393..3497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3394..3497 -
1622815560.1881034-CDS-L-elsbetiae_contig14107:3705..38461622815560.1881034-CDS-L-elsbetiae_contig14107:3705..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3706..3846 -
1691682959.8220694-CDS-L-elsbetiae_contig14107:3705..38461691682959.8220694-CDS-L-elsbetiae_contig14107:3705..3846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14107 3706..3846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14107.3064.1

>prot_L-elsbetiae_contig14107.3064.1 ID=prot_L-elsbetiae_contig14107.3064.1|Name=mRNA_L-elsbetiae_contig14107.3064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
QVISAPISQYDIENGRSACTCICLEAAVQTLREFADGAWAGTPDHVVNYV
TGGVSSYEAVAAAGTLSVEHTSVAEILATVARYRDALQPATAQATHQGLL
GSDTSIASILREIGGARQEKNKPVAVAVTKPPETVVCFLPPERNPATAGA
PSSWLLFDSHPRPQLGLVGASVRSFAGEDALIEALNDIFPAFDLGAEDNV
MASMYNMFDCVPLTLKH*
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mRNA from alignment at L-elsbetiae_contig14107:525..3846-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14107.3064.1 ID=mRNA_L-elsbetiae_contig14107.3064.1|Name=mRNA_L-elsbetiae_contig14107.3064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3322bp|location=Sequence derived from alignment at L-elsbetiae_contig14107:525..3846- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGATATCTGCTCCCATCAGCCAGTATGACATCGAGAACGGTCGATC
TGCGTGTACGTGCATTTGCTTGGAAGCTGCGGTGCAAACTCTGAGGGAAT
TTGCCGATGGCGCTTGGGCTGGGACACCTGACCATGTGGTGGTGAGTCGG
TGCAAAAGCACAATTCACAGAAGCACGTGGAGCCTCCACCGGCATTGTGG
GGGGTATTTTGATGGCATTTACTGCTGTTATGCTGCTCCCTCTCTTGTTA
ATTGAGCCCGTTTGATGGCTCTGTCTGTATGTATCGGCATCGACGAGTGC
ATGCCTGCATGCCCGAACTACCCGTGTTGTTCGTTGTCGCTTCATTCAGA
ACTACGTCACCGGTGGGGTGAGCAGTTACGAAGCAGTGGCAGCCGCTGGG
ACGCTCTCGGTGGAACATACCTCTGTTGCTGAAATCCTCGCCACTGTCGC
AAGGTGATCTGACAATGGCGGCGCGAGAGATACCCCGACAGCGATCCTCG
CTCACTTCGTGTGTGCTGCTTACATAGGTGCTCGCTTGAGCTGCTGCTTG
CCTGTAGACGTGTTGAGATGCCAGAATATTTTTTTGGTTGACGTGCCCTC
GTCCCGTCCTGCTGCTTCTATATGTCAGATATCGTGATGCCTTACAGCCG
GCAACCGCCCAGGCAACACATCAGGGGTTGCTGGGCTCCGACACTTCCAT
CGCTAGTATTTTGCGCGAAATCGGTGGCGCAAGGCAAGAAAAAAATAAGC
CCGTGGCAGTGGCGGTCACGAAGCCTCCCGAAACGGTGAGTACCTTGTGG
ATTTGTTCGCTACAACCTATTTGTTGTTGCTTCTGCAAACGTGCCGCTCA
AACAGAAGCAGCGAAAGTCTTCAACGTACTTTGCCTGCCTTCTGGAGAAG
TAAGCCTGACTCGTTTCCGCCTGCCCCCCCGCCCCAGGAGTAAGGTAGGT
AACATACATGTTATGTAGATGTTACCAAGACCTGGTGGTGCACCTGCAGG
CATAGTACCCAAACACAAAAAGGGAAAGCTTTCAAGTTTTTTTGCCTCCC
TGCGGTGAGAGTGAGCCTCGCTCCTTTCCCCCCCCCCCCCCCCCCCCCCC
CCCCTCCCATATATCCAAGGTACTAGTATACAATATACTAGTATGTACAT
ATATTTACAGGTCGAGAGGCGAACTACACTTTTGTATTTCCGTACTTGGC
GAATCGTGCACGACGTATCTGTACCGGCTTAACTGGTGCAGAAGCCCCCG
TCACTGATCGACTGCCGCGGATGACCTTGTAGACTCTAGCTTGCGCGCGG
TGAGATCGGCAGTCACAATGCAGTTTCGGTTGGTCGCCGGATTGAAAACA
ATCAGGTGGTGTGCTTCCTGCCTCCAGAGCGGAATCCTGCAACCGCGGGC
GCACCGTCGTCTTGGCTCCTCTTTGATTCGCACCCCCGCCCTCAGCTAGG
TTTGGTGGGAGCAAGCGTTCGATCATTTGCTGGGGAGGATGCGCTTATCG
AAGCATTGAACGACATTTTCCCTGCGTTCGATTTGGGGGCGGAAGACAAT
GTCATGGCAAGCATGTATAACATGTTTGACTGCGTCCCTTTGACATTGAA
GCACTAACAGAGGAGAGGTTTGGCGTTGCAGATATGGACCTTCGCAGATT
ATTTTGTTGCGCTGAGCAGGTAGAATGTCGCTAGGCAAGCTTGTAGGCTC
CGAAAAAATTTCATGTGGATCCCTGCTGAATATGTTGGTATTGTGTCCGA
ATGAAGGTAGGGGCCGCAAAAAGAGTATTTGCCGACTGACTGGGTGTGCA
TCACACGCACCATTTCGTGAGCTGATTGCTAAGTTCAGCTAGTATGCGTG
AGAAGGCATAACACCAGCACATCGGCGTCACCCCCTCCTGTGTGACCCGG
GTTGGTTATAGTTGTACAGACAAATGCACTGCAAAGTGCAGTACCTCCAA
GTACACCGCAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAA
AATAAATGGGGAGGACACACACACACACACACATCGGCGTCAATGCCGAG
CACCCGAGTGCAGACATCTGCATGGTCGAGTCGATGTAGACGAGACATAT
CTTACCTATTCTAAATCCACTTTAGTGGCACTACTGTATTTAGTTTTCTC
AAGCCAAACGATCCAAACCTATAGTCTTACGGGTTAACCCGCCGCGTTTT
TGGTAATGCGTTTTTGGTAATAGGTTTTGGCCCAAAACGCGTCATCCCGT
TTTCTCGCCGCTCACGCCACCAACGGGCGTCTATTTTCGCCGGTGAACGC
ATGTGGGCCTCAAGGTTATGCCCCCCCAATTTCCCTTGTCGCCGACGCTG
GGCGCATGAGATAGCGACGACGAACCACCCCAAATCTCGGTCAAATCAGT
ATTTATCTGTGTTGCACCCTTGGGAGCACAACTGCGAGCCGCTAGCGCTG
TAGCTAAGGCTGTCGCACATCAAGTGGCCGAGTTACGTAGGAATCGTTGG
AGCCGATTAGGAGAAAATCAAGACTGTGCACGCCTCCCTGAACCTCGGTG
GTGGTCCTCTCGTAGACCAGGAGTCCACTCATATTTTGAACTCGGTGTCC
AACTTTGGCCATCATGTCAGAGACACAAGCAGGAAGATTCTATCTACTCC
ACAGCTCGCGGTTTTCCTTATCTATCTATATGTCACAAAGGGCGGCCGCG
TTAGGTTTTGGGCCGCGAGAGAGTGTGTTCGCGAAATGGTCCGGATCGGC
CAGAACGCGCGAGTACTTTCGATTGTCTTTTGTTTGAAGTCTCCGGGAGC
GCTCACAGCTATGTTCGCTACTGCAGTGGAGGTTGCCAAGGCTTCTCACT
GCCGTTTAAAAGCCAGGTCTACATCTATTCGATACTCGGTGTCGGCTGTA
GTCTGTGGGAGTCTAGCGTTACTCTGCATGGTGTACTAGTCTACGCTGTA
TGAGATGTGCGTGACACGTGACACCTGCGGCGGCGGAAAAAAAAAGGAGG
GAGTCCGCAGCGGGAATTGGGGGTGTGTCACAACCGAAAGTTGGATGTGT
CGGGGGGGGTGGTCTCTTTCCGCGCGCCCCAGCCTGCAGGTGTTTGCATC
ACGGTTTGTTGCTATTGGTGCTCAAGGTAAAATATCAATAGTGGGGGGCC
CTCTATAGTGCCGGGTAGTGTCCTGAGATTTTACCGGCACTATTCATAAT
AGTGCCTCGATAGTGCCGAATCGGCACTATTGAGGAGGTGTTTGATTTCA
TGTGTGGCGCTCACGCTTTGCGGGCCAACAGAGTACGAAATGGATCGAGA
TCATGTTTTTTTTATTTTCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14107:525..3846-

>mRNA_L-elsbetiae_contig14107.3064.1 ID=mRNA_L-elsbetiae_contig14107.3064.1|Name=mRNA_L-elsbetiae_contig14107.3064.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig14107:525..3846- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGATATCTGCTCCCATCAGCCAGTATGACATCGAGAACGGTCGATC
TGCGTGTACGTGCATTTGCTTGGAAGCTGCGGTGCAAACTCTGAGGGAAT
TTGCCGATGGCGCTTGGGCTGGGACACCTGACCATGTGGTGCAGGTGATA
TCTGCTCCCATCAGCCAGTATGACATCGAGAACGGTCGATCTGCGTGTAC
GTGCATTTGCTTGGAAGCTGCGGTGCAAACTCTGAGGGAATTTGCCGATG
GCGCTTGGGCTGGGACACCTGACCATGTGGTGAACTACGTCACCGGTGGG
GTGAGCAGTTACGAAGCAGTGGCAGCCGCTGGGACGCTCTCGGTGGAACA
TACCTCTGTTGCTGAAATCCTCGCCACTGTCGCAAGAACTACGTCACCGG
TGGGGTGAGCAGTTACGAAGCAGTGGCAGCCGCTGGGACGCTCTCGGTGG
AACATACCTCTGTTGCTGAAATCCTCGCCACTGTCGCAAGATATCGTGAT
GCCTTACAGCCGGCAACCGCCCAGGCAACACATCAGGGGTTGCTGGGCTC
CGACACTTCCATCGCTAGTATTTTGCGCGAAATCGGTGGCGCAAGGCAAG
AAAAAAATAAGCCCGTGGCAGTGGCGGTCACGAAGCCTCCCGAAACGATA
TCGTGATGCCTTACAGCCGGCAACCGCCCAGGCAACACATCAGGGGTTGC
TGGGCTCCGACACTTCCATCGCTAGTATTTTGCGCGAAATCGGTGGCGCA
AGGCAAGAAAAAAATAAGCCCGTGGCAGTGGCGGTCACGAAGCCTCCCGA
AACGGTGGTGTGCTTCCTGCCTCCAGAGCGGAATCCTGCAACCGCGGGCG
CACCGTCGTCTTGGCTCCTCTTTGATTCGCACCCCCGCCCTCAGCTAGGT
TTGGTGGGAGCAAGCGTTCGATCATTTGCTGGGGAGGATGCGCTTATCGA
AGCATTGAACGACATTTTCCCTGCGTTCGATTTGGGGGCGGAAGACAATG
TCATGGCAAGCATGTATAACATGTTTGACTGCGTCCCTTTGACATTGAAG
CACTAAGTGGTGTGCTTCCTGCCTCCAGAGCGGAATCCTGCAACCGCGGG
CGCACCGTCGTCTTGGCTCCTCTTTGATTCGCACCCCCGCCCTCAGCTAG
GTTTGGTGGGAGCAAGCGTTCGATCATTTGCTGGGGAGGATGCGCTTATC
GAAGCATTGAACGACATTTTCCCTGCGTTCGATTTGGGGGCGGAAGACAA
TGTCATGGCAAGCATGTATAACATGTTTGACTGCGTCCCTTTGACATTGA
AGCACTAA
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