mRNA_L-elsbetiae_contig14101.3062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14101.3062.1
Unique NamemRNA_L-elsbetiae_contig14101.3062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 8.020e-80
Identity = 141/223 (63.23%), Postives = 153/223 (68.61%), Query Frame = 1
Query:    1 MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRG--KLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEG-SVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 660
            MAPRQVFPY +   G LR +PRQLL ++ +   K  +                                             DL DALND XXXX    S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M
Sbjct:    1 MAPRQVFPYHE--CGVLR-TPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKPSPFTPTFDESGSSGGEAACVQQPHCSDLRDALNDDXXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 220          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.640e-70
Identity = 138/222 (62.16%), Postives = 149/222 (67.12%), Query Frame = 1
Query:    1 MAPRQVFPYSDEGAGGLRPSPRQLLVDA--VRGKLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 660
            MAPRQVFPY +   G LR +PRQLL ++                                                      DL DAL D XXXX E S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QAN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M
Sbjct:    1 MAPRQVFPYDE--CGVLR-TPRQLLAESQXXXXXXXXXXXXXXXHQREPWLDLDNPSPFTPTFDESGSSGGEAGCVQQPHSSDLRDALKDDXXXXXE-SLDLGTAWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 218          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.470e-36
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  283 EGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKEN 657
            EGS  L          P  GVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF   +QAN AI+ M  ++FK G +LG+LPSDENRTL+V G+ + WS + +      N
Sbjct:  214 EGSDHLSFCCGETPGSPPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSAN 338          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.550e-30
Identity = 66/125 (52.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  331 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLREDWSCEYISQLL 648
            P  GVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF T +QAN A+++M  F+FK G +L                    VLPSDENRTL+  G+ ED S + +   L
Sbjct:  151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFL 275          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 5.190e-17
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  280 GEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            G G+ +L +  A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +   W+ E I Q LK+
Sbjct:  234 GSGAQELAA--AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 355          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 88.6 bits (218), Expect = 1.070e-16
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            A+++   K+  EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLFVG +   W+ E I Q LK+
Sbjct:  324 AAKERRVKKEHEIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKD 436          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-16
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +   W+ E I Q LK+
Sbjct:  540 AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 652          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 87.8 bits (216), Expect = 2.010e-16
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  313 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M       G+  G  P+++N TLF+G +   W+ E I Q LKE
Sbjct:  334 AAKERKVKKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKE 446          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00087821D9 (nucleolin-like isoform X8 n=4 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00087821D9)

HSP 1 Score: 87.0 bits (214), Expect = 3.870e-16
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  316 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            +++ + ++ +E+FVGGL R    + L+  FQH GEV +VR+ R+    + +GY +V+FAT +QA+RA+  M R     G+  G  PS++N TLF+G +   W+ E + Q LK+
Sbjct:  507 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 618          
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A314LEQ0_NICAT (Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0A314LEQ0_NICAT)

HSP 1 Score: 87.0 bits (214), Expect = 3.960e-16
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  316 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 654
            +++ + ++ +E+FVGGL R    + L+  FQH GEV +VR+ R+    + +GY +V+FAT +QA+RA+  M R     G+  G  PS++N TLF+G +   W+ E + Q LK+
Sbjct:  662 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 773          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYA2_ECTSI8.020e-8063.23RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9D0_9PHAE1.640e-7062.16RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CJD8_9STRA2.470e-3655.20RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CKV5_9STRA1.550e-3052.80RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A803NB38_CHEQI5.190e-1739.20Uncharacterized protein n=1 Tax=Chenopodium quinoa... [more]
A0A7C9F016_OPUST1.070e-1642.11Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A803NC05_CHEQI1.550e-1640.35Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
UPI00053FBE2C2.010e-1641.23nucleolin-like isoform X1 n=2 Tax=Beta vulgaris su... [more]
UPI00087821D93.870e-1638.05nucleolin-like isoform X8 n=4 Tax=Nicotiana toment... [more]
A0A314LEQ0_NICAT3.960e-1638.05Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14101contigL-elsbetiae_contig14101:3468..4127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.3
Seed ortholog evalue6.7e-63
Seed eggNOG ortholog2880.D7FYA2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytidine to uridine editing
EggNOG OGsKOG0117@1,KOG0117@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-24_003230.1
Exons1
Model size660
Cds size660
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815560.039701-CDS-L-elsbetiae_contig14101:3467..41271622815560.039701-CDS-L-elsbetiae_contig14101:3467..4127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14101 3468..4127 -
1691682959.7487044-CDS-L-elsbetiae_contig14101:3467..41271691682959.7487044-CDS-L-elsbetiae_contig14101:3467..4127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14101 3468..4127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14101.3062.1prot_L-elsbetiae_contig14101.3062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14101 3468..4127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14101.3062.1

>prot_L-elsbetiae_contig14101.3062.1 ID=prot_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRGKLADDTLSTSDDNAPPFIA
PPPLSSGGGGCHETCPQQQQQQQQQQEDSGDLHDALNDDDDDDGEGSVDL
GSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDK
RRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFV
GGLREDWSCEYISQLLKENM
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mRNA from alignment at L-elsbetiae_contig14101:3468..4127-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14101.3062.1 ID=mRNA_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig14101:3468..4127- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCGAGACAGGTGTTTCCGTACAGCGATGAGGGTGCTGGAGGCCT GCGACCGTCACCTAGGCAGCTCCTGGTGGACGCCGTCCGTGGCAAGTTGG CCGATGATACCCTGTCAACAAGCGATGACAACGCACCGCCTTTTATCGCT CCGCCGCCATTGTCAAGCGGCGGCGGCGGCTGCCATGAGACGTGCCCGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGACAGCGGCGACCTCCACG ACGCCCTCAACGACGACGATGATGATGACGGAGAGGGGAGCGTGGACCTG GGGTCCACGTGGGCTAGCCGCGACTTCGTGCCCAAGCGAGGCGTCGAGAT TTTCGTTGGGGGCCTAACCCGGAGCACGCGTCGCGACATGCTTCGAGACT GGTTCCAGCACGCCGGGGAGGTGACCGAGGTTCGCATCGCCCGCGACAAG CGGCGCCGGAGGTGCCGCGGGTACGGCTACGTCCGCTTCGCCACGGGCGA CCAGGCGAACCGCGCCATCGACACCATGCACCGCTTCGAGTTCAAGCACG GCAGGTTCCTCGGCGTGCTGCCATCCGACGAGAACCGCACGCTCTTCGTG GGCGGCTTGCGGGAGGACTGGAGCTGCGAGTACATATCCCAGCTGCTCAA GGAAAACATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14101:3468..4127-

>mRNA_L-elsbetiae_contig14101.3062.1 ID=mRNA_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig14101:3468..4127- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCGAGACAGGTGTTTCCGTACAGCGATGAGGGTGCTGGAGGCCT
GCGACCGTCACCTAGGCAGCTCCTGGTGGACGCCGTCCGTGGCAAGTTGG
CCGATGATACCCTGTCAACAAGCGATGACAACGCACCGCCTTTTATCGCT
CCGCCGCCATTGTCAAGCGGCGGCGGCGGCTGCCATGAGACGTGCCCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGACAGCGGCGACCTCCACG
ACGCCCTCAACGACGACGATGATGATGACGGAGAGGGGAGCGTGGACCTG
GGGTCCACGTGGGCTAGCCGCGACTTCGTGCCCAAGCGAGGCGTCGAGAT
TTTCGTTGGGGGCCTAACCCGGAGCACGCGTCGCGACATGCTTCGAGACT
GGTTCCAGCACGCCGGGGAGGTGACCGAGGTTCGCATCGCCCGCGACAAG
CGGCGCCGGAGGTGCCGCGGGTACGGCTACGTCCGCTTCGCCACGGGCGA
CCAGGCGAACCGCGCCATCGACACCATGCACCGCTTCGAGTTCAAGCACG
GCAGGTTCCTCGGCGTGCTGCCATCCGACGAGAACCGCACGCTCTTCGTG
GGCGGCTTGCGGGAGGACTGGAGCTGCGAGTACATATCCCAGCTGCTCAA
GGAAAACATGATGGCTCCGAGACAGGTGTTTCCGTACAGCGATGAGGGTG
CTGGAGGCCTGCGACCGTCACCTAGGCAGCTCCTGGTGGACGCCGTCCGT
GGCAAGTTGGCCGATGATACCCTGTCAACAAGCGATGACAACGCACCGCC
TTTTATCGCTCCGCCGCCATTGTCAAGCGGCGGCGGCGGCTGCCATGAGA
CGTGCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGACAGCGGC
GACCTCCACGACGCCCTCAACGACGACGATGATGATGACGGAGAGGGGAG
CGTGGACCTGGGGTCCACGTGGGCTAGCCGCGACTTCGTGCCCAAGCGAG
GCGTCGAGATTTTCGTTGGGGGCCTAACCCGGAGCACGCGTCGCGACATG
CTTCGAGACTGGTTCCAGCACGCCGGGGAGGTGACCGAGGTTCGCATCGC
CCGCGACAAGCGGCGCCGGAGGTGCCGCGGGTACGGCTACGTCCGCTTCG
CCACGGGCGACCAGGCGAACCGCGCCATCGACACCATGCACCGCTTCGAG
TTCAAGCACGGCAGGTTCCTCGGCGTGCTGCCATCCGACGAGAACCGCAC
GCTCTTCGTGGGCGGCTTGCGGGAGGACTGGAGCTGCGAGTACATATCCC
AGCTGCTCAAGGAAAACATG
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