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Homology
BLAST of mRNA_L-elsbetiae_contig14097.3051.1 vs. uniprot
Match: A0A6H5JM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM75_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.140e-21 Identity = 50/83 (60.24%), Postives = 60/83 (72.29%), Query Frame = 2
Query: 41 MANPITQPDIIHCLVDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVHTKVPQLRQSFECGQRLEAKVCRAIAALGKLDLL 289
M NP+ QPDI+ L++FV EQY+FF GVSR WR++W RP TRA T T VPQL QSF+CG + VCR IAALG+LDLL
Sbjct: 1 MPNPLMQPDIVFRLMEFVGGEQYIFFAGVSRTWRDAWEGRPTTTRAFTADTGVPQLSQSFKCGLAPRSTVCRDIAALGRLDLL 83
BLAST of mRNA_L-elsbetiae_contig14097.3051.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 102 bits (254), Expect = 6.200e-21 Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 2
Query: 65 DIIHCLVDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVHTKVPQLRQSFECGQRLEAKVCRAIAALGKLDLLQ 292
DI+ + +FVDD QYLFF VSRGWR+ WGKRP T+A+T T VPQL SFECG R A VC +A LG+LDLL+
Sbjct: 8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLR 83
BLAST of mRNA_L-elsbetiae_contig14097.3051.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.820e-18 Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2
Query: 65 DIIHCLVDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVHTKVPQLRQSFECGQRLEAKVCRAIAALGKLDLLQ 292
DI+ + +FVDD QYLFF VSRGWR+ WGKRP T+A+T T V QL SFECG R A VC +A LG+LDLL+
Sbjct: 10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLR 85
BLAST of mRNA_L-elsbetiae_contig14097.3051.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.870e-18 Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 2
Query: 59 QPDIIHCLVDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVHTKVPQLRQSFECGQRLEAKVCRAIAALGKLDLLQ 292
Q D+ CLV+FVD EQ+LFF GV R W+ +WG+RP TRAVT T V QL Q+F+CG L A VC ++A LG+LDLLQ
Sbjct: 8 QSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQ 85
BLAST of mRNA_L-elsbetiae_contig14097.3051.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.620e-17 Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 2
Query: 83 VDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVHTKVPQLRQSFECGQRLEAKVCRAIAALGKLDLL 289
++FV EQYLFF GVSR WR++W RP TRAVT T VPQL QSFECG + VC+ IAALG+LDLL
Sbjct: 1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLL 69
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 2273 |
Cds size | 1755 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815558.7932687-UTR-L-elsbetiae_contig14097:2265..2305 | 1622815558.7932687-UTR-L-elsbetiae_contig14097:2265..2305 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14097 2266..2305 + |
1691682958.941935-UTR-L-elsbetiae_contig14097:2265..2305 | 1691682958.941935-UTR-L-elsbetiae_contig14097:2265..2305 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14097 2266..2305 + |
1622815558.8204303-UTR-L-elsbetiae_contig14097:4060..4538 | 1622815558.8204303-UTR-L-elsbetiae_contig14097:4060..4538 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14097 4061..4538 + |
1691682958.961219-UTR-L-elsbetiae_contig14097:4060..4538 | 1691682958.961219-UTR-L-elsbetiae_contig14097:4060..4538 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig14097 4061..4538 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815558.8076572-CDS-L-elsbetiae_contig14097:2305..4060 | 1622815558.8076572-CDS-L-elsbetiae_contig14097:2305..4060 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14097 2306..4060 + |
1691682958.9516244-CDS-L-elsbetiae_contig14097:2305..4060 | 1691682958.9516244-CDS-L-elsbetiae_contig14097:2305..4060 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig14097 2306..4060 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14097.3051.1 >prot_L-elsbetiae_contig14097.3051.1 ID=prot_L-elsbetiae_contig14097.3051.1|Name=mRNA_L-elsbetiae_contig14097.3051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=585bp
MANPITQPDIIHCLVDFVDDEQYLFFVGVSRGWRNSWGKRPLHTRAVTVH TKVPQLRQSFECGQRLEAKVCRAIAALGKLDLLQCARESGCPWDADTCSY AAGNGHLEVLQWCRSNGCDWDKWTTAEAAGKGHLGVLRWARNNGCVWDED ACRLAALEGHLHILKFARLNGCPWDEEVMCSTAAEGGNIEVLKYAREEGC PWNANTCCYAAKEGHLEVLKYAHEGGCPWDESTCTVAVMEGHLEVLKYAR EGGCPWDGLTCCARAANSGHIEVLKYAREEGCPWNANTCYFAANSGHIEV LKYAREEGCPWNANTCYYAAKEGHLEVLKYAHEGGCPWDANTCCDAAEGG HLEVLKYAREEGCPWDANTCYYAAKKGHLEVLKYAHEGGCPWDESTCTVA AKSGHLEVLKYAREGGCRWDANTCYYAAKKGHLEVLKYAREGGCPWDART CSSAASSGHLEVLKYAREGGCPWDARTCSSAASSGHLEVLKYAREGGCPW DAITCSSAAWSGHLEVFKYAREGGCPWDARTCSNAASSGHLEVLKYARGE GCPWGETNLGVAESRGHHDVVEWAVANGCPRCQL* back to topmRNA from alignment at L-elsbetiae_contig14097:2266..4538+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig14097.3051.1 ID=mRNA_L-elsbetiae_contig14097.3051.1|Name=mRNA_L-elsbetiae_contig14097.3051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2273bp|location=Sequence derived from alignment at L-elsbetiae_contig14097:2266..4538+ (Laminarionema elsbetiae ELsaHSoW15) AGATCCACCCGGCCAAGACACTAGTGCGCAGCCGGCTGCCATGGCCAACC
CGATCACACAACCGGACATCATCCATTGCCTGGTAGATTTCGTGGACGAC
GAGCAGTATCTGTTCTTCGTGGGGGTGTCCAGAGGCTGGAGGAACTCGTG
GGGGAAACGCCCGCTTCACACCCGTGCCGTGACGGTGCATACGAAGGTGC
CCCAGCTGCGGCAGAGCTTTGAGTGCGGCCAACGGTTGGAAGCCAAGGTG
TGCCGGGCGATCGCTGCCCTCGGAAAGCTGGATCTCCTGCAGTGCGCCCG
AGAAAGCGGCTGCCCCTGGGATGCAGACACGTGCTCCTACGCGGCTGGGA
ACGGGCACCTCGAGGTCCTTCAGTGGTGTAGGAGCAATGGTTGTGACTGG
GACAAATGGACCACTGCCGAGGCGGCTGGGAAGGGTCACCTAGGCGTGCT
GAGGTGGGCCAGAAACAATGGTTGCGTTTGGGACGAGGATGCCTGCCGCT
TGGCCGCTCTGGAAGGCCATCTGCACATCTTGAAATTTGCTCGCCTGAAT
GGCTGTCCTTGGGACGAGGAAGTCATGTGTTCAACAGCTGCTGAGGGAGG
CAACATTGAGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGGAATG
CAAATACTTGCTGTTATGCCGCAAAGGAAGGCCATCTTGAGGTTCTCAAG
TATGCGCATGAGGGAGGATGCCCGTGGGATGAGAGTACTTGCACTGTTGC
CGTAATGGAAGGCCACCTCGAGGTTCTCAAGTATGCCCGTGAGGGAGGAT
GCCCGTGGGATGGGTTAACTTGCTGCGCTCGTGCCGCGAATTCAGGCCAC
ATTGAGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGGAATGCAAA
TACTTGCTATTTTGCCGCGAATTCAGGCCACATTGAGGTTCTCAAGTATG
CACGCGAGGAAGGATGTCCGTGGAATGCAAATACTTGCTATTATGCCGCA
AAGGAAGGCCATCTTGAAGTTCTCAAGTATGCGCATGAGGGAGGATGCCC
GTGGGATGCAAATACTTGCTGTGATGCCGCAGAGGGAGGCCACCTCGAGG
TTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGGGATGCAAATACTTGC
TATTATGCCGCAAAGAAAGGACATCTTGAGGTTCTCAAGTATGCGCATGA
AGGAGGATGTCCGTGGGATGAGAGTACTTGCACTGTTGCCGCGAAGTCAG
GCCACCTCGAGGTTCTCAAGTATGCCCGTGAGGGAGGATGTCGGTGGGAT
GCAAATACTTGCTATTATGCCGCAAAGAAAGGCCATCTTGAGGTTCTCAA
GTATGCGCGTGAGGGAGGATGCCCGTGGGATGCCAGAACTTGTTCTTCTG
CCGCGTCGTCAGGCCACCTCGAGGTTCTCAAGTATGCACGTGAGGGAGGA
TGCCCGTGGGATGCCAGAACTTGCTCTTCTGCCGCGTCGTCAGGCCACCT
TGAGGTTCTCAAGTATGCACGCGAGGGAGGTTGTCCGTGGGATGCCATAA
CTTGCTCTTCTGCCGCGTGGTCAGGCCACCTCGAGGTTTTCAAGTATGCA
CGTGAGGGAGGATGCCCGTGGGATGCCAGAACTTGCTCTAATGCCGCGTC
GTCAGGCCACCTTGAGGTTCTCAAGTACGCACGTGGGGAGGGATGTCCGT
GGGGCGAGACTAATTTGGGCGTAGCCGAATCGCGAGGGCACCACGACGTA
GTAGAATGGGCGGTCGCCAATGGTTGTCCAAGATGTCAACTCTGATCCGA
CCGAACGGCAGCTGGTGTGGCATACTATGTATGCACCGAATCTTTGCTTG
CAGCCCACTGCCCCGTTCAGAATCTGGAGATAAGTTCTTGGTGCCTTTAG
CAGCCCCGAGCATGTACCATTACCACCGGGGCCCACTCTGTAGTACAAGT
GCCTGGTGCGCTGCGTAATATTCTGCTTCCAAGCAACATGTTGACCGTGC
TATCCTAAGGCAGCAGCAGCGAACCGTAGCTAACAAGGTAGCAAGGCCCG
GACACGCAGTACTGTTCGTGTGAAGAGGTGGATTATTAGTAGGCCCTGAC
TCCGTAGGCATCTTTTTTCTGTGTTTTTGGCACATAAAATACGTACTTTT
AGGCTTATTTTTTTCCTTTTTTGCTCGCCTTTTTTTCTTTTGGCGACCGG
TGGTGTCTTTGATGCTCTTTAAAAAAAAAAAAGGCACCTCAAAAAATGTT
TACGCCCCCAATTTTGCACCCCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig14097:2266..4538+ >mRNA_L-elsbetiae_contig14097.3051.1 ID=mRNA_L-elsbetiae_contig14097.3051.1|Name=mRNA_L-elsbetiae_contig14097.3051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3510bp|location=Sequence derived from alignment at L-elsbetiae_contig14097:2266..4538+ (Laminarionema elsbetiae ELsaHSoW15) ATGGCCAACCCGATCACACAACCGGACATCATCCATTGCCTGGTAGATTT CGTGGACGACGAGCAGTATCTGTTCTTCGTGGGGGTGTCCAGAGGCTGGA GGAACTCGTGGGGGAAACGCCCGCTTCACACCCGTGCCGTGACGGTGCAT ACGAAGGTGCCCCAGCTGCGGCAGAGCTTTGAGTGCGGCCAACGGTTGGA AGCCAAGGTGTGCCGGGCGATCGCTGCCCTCGGAAAGCTGGATCTCCTGC AGTGCGCCCGAGAAAGCGGCTGCCCCTGGGATGCAGACACGTGCTCCTAC GCGGCTGGGAACGGGCACCTCGAGGTCCTTCAGTGGTGTAGGAGCAATGG TTGTGACTGGGACAAATGGACCACTGCCGAGGCGGCTGGGAAGGGTCACC TAGGCGTGCTGAGGTGGGCCAGAAACAATGGTTGCGTTTGGGACGAGGAT GCCTGCCGCTTGGCCGCTCTGGAAGGCCATCTGCACATCTTGAAATTTGC TCGCCTGAATGGCTGTCCTTGGGACGAGGAAGTCATGTGTTCAACAGCTG CTGAGGGAGGCAACATTGAGGTTCTCAAGTATGCACGCGAGGAAGGATGT CCGTGGAATGCAAATACTTGCTGTTATGCCGCAAAGGAAGGCCATCTTGA GGTTCTCAAGTATGCGCATGAGGGAGGATGCCCGTGGGATGAGAGTACTT GCACTGTTGCCGTAATGGAAGGCCACCTCGAGGTTCTCAAGTATGCCCGT GAGGGAGGATGCCCGTGGGATGGGTTAACTTGCTGCGCTCGTGCCGCGAA TTCAGGCCACATTGAGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGT GGAATGCAAATACTTGCTATTTTGCCGCGAATTCAGGCCACATTGAGGTT CTCAAGTATGCACGCGAGGAAGGATGTCCGTGGAATGCAAATACTTGCTA TTATGCCGCAAAGGAAGGCCATCTTGAAGTTCTCAAGTATGCGCATGAGG GAGGATGCCCGTGGGATGCAAATACTTGCTGTGATGCCGCAGAGGGAGGC CACCTCGAGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGGGATGC AAATACTTGCTATTATGCCGCAAAGAAAGGACATCTTGAGGTTCTCAAGT ATGCGCATGAAGGAGGATGTCCGTGGGATGAGAGTACTTGCACTGTTGCC GCGAAGTCAGGCCACCTCGAGGTTCTCAAGTATGCCCGTGAGGGAGGATG TCGGTGGGATGCAAATACTTGCTATTATGCCGCAAAGAAAGGCCATCTTG AGGTTCTCAAGTATGCGCGTGAGGGAGGATGCCCGTGGGATGCCAGAACT TGTTCTTCTGCCGCGTCGTCAGGCCACCTCGAGGTTCTCAAGTATGCACG TGAGGGAGGATGCCCGTGGGATGCCAGAACTTGCTCTTCTGCCGCGTCGT CAGGCCACCTTGAGGTTCTCAAGTATGCACGCGAGGGAGGTTGTCCGTGG GATGCCATAACTTGCTCTTCTGCCGCGTGGTCAGGCCACCTCGAGGTTTT CAAGTATGCACGTGAGGGAGGATGCCCGTGGGATGCCAGAACTTGCTCTA ATGCCGCGTCGTCAGGCCACCTTGAGGTTCTCAAGTACGCACGTGGGGAG GGATGTCCGTGGGGCGAGACTAATTTGGGCGTAGCCGAATCGCGAGGGCA CCACGACGTAGTAGAATGGGCGGTCGCCAATGGTTGTCCAAGATGTCAAC TCTGAATGGCCAACCCGATCACACAACCGGACATCATCCATTGCCTGGTA GATTTCGTGGACGACGAGCAGTATCTGTTCTTCGTGGGGGTGTCCAGAGG CTGGAGGAACTCGTGGGGGAAACGCCCGCTTCACACCCGTGCCGTGACGG TGCATACGAAGGTGCCCCAGCTGCGGCAGAGCTTTGAGTGCGGCCAACGG TTGGAAGCCAAGGTGTGCCGGGCGATCGCTGCCCTCGGAAAGCTGGATCT CCTGCAGTGCGCCCGAGAAAGCGGCTGCCCCTGGGATGCAGACACGTGCT CCTACGCGGCTGGGAACGGGCACCTCGAGGTCCTTCAGTGGTGTAGGAGC AATGGTTGTGACTGGGACAAATGGACCACTGCCGAGGCGGCTGGGAAGGG TCACCTAGGCGTGCTGAGGTGGGCCAGAAACAATGGTTGCGTTTGGGACG AGGATGCCTGCCGCTTGGCCGCTCTGGAAGGCCATCTGCACATCTTGAAA TTTGCTCGCCTGAATGGCTGTCCTTGGGACGAGGAAGTCATGTGTTCAAC AGCTGCTGAGGGAGGCAACATTGAGGTTCTCAAGTATGCACGCGAGGAAG GATGTCCGTGGAATGCAAATACTTGCTGTTATGCCGCAAAGGAAGGCCAT CTTGAGGTTCTCAAGTATGCGCATGAGGGAGGATGCCCGTGGGATGAGAG TACTTGCACTGTTGCCGTAATGGAAGGCCACCTCGAGGTTCTCAAGTATG CCCGTGAGGGAGGATGCCCGTGGGATGGGTTAACTTGCTGCGCTCGTGCC GCGAATTCAGGCCACATTGAGGTTCTCAAGTATGCACGCGAGGAAGGATG TCCGTGGAATGCAAATACTTGCTATTTTGCCGCGAATTCAGGCCACATTG AGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGGAATGCAAATACT TGCTATTATGCCGCAAAGGAAGGCCATCTTGAAGTTCTCAAGTATGCGCA TGAGGGAGGATGCCCGTGGGATGCAAATACTTGCTGTGATGCCGCAGAGG GAGGCCACCTCGAGGTTCTCAAGTATGCACGCGAGGAAGGATGTCCGTGG GATGCAAATACTTGCTATTATGCCGCAAAGAAAGGACATCTTGAGGTTCT CAAGTATGCGCATGAAGGAGGATGTCCGTGGGATGAGAGTACTTGCACTG TTGCCGCGAAGTCAGGCCACCTCGAGGTTCTCAAGTATGCCCGTGAGGGA GGATGTCGGTGGGATGCAAATACTTGCTATTATGCCGCAAAGAAAGGCCA TCTTGAGGTTCTCAAGTATGCGCGTGAGGGAGGATGCCCGTGGGATGCCA GAACTTGTTCTTCTGCCGCGTCGTCAGGCCACCTCGAGGTTCTCAAGTAT GCACGTGAGGGAGGATGCCCGTGGGATGCCAGAACTTGCTCTTCTGCCGC GTCGTCAGGCCACCTTGAGGTTCTCAAGTATGCACGCGAGGGAGGTTGTC CGTGGGATGCCATAACTTGCTCTTCTGCCGCGTGGTCAGGCCACCTCGAG GTTTTCAAGTATGCACGTGAGGGAGGATGCCCGTGGGATGCCAGAACTTG CTCTAATGCCGCGTCGTCAGGCCACCTTGAGGTTCTCAAGTACGCACGTG GGGAGGGATGTCCGTGGGGCGAGACTAATTTGGGCGTAGCCGAATCGCGA GGGCACCACGACGTAGTAGAATGGGCGGTCGCCAATGGTTGTCCAAGATG TCAACTCTGA back to top
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