mRNA_L-elsbetiae_contig14090.3050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14090.3050.1
Unique NamemRNA_L-elsbetiae_contig14090.3050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14090.3050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14090contigL-elsbetiae_contig14090:2585..3989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14090.3050.1prot_L-elsbetiae_contig14090.3050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14090 2594..3989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.726653-UTR-L-elsbetiae_contig14090:2584..25931622815558.726653-UTR-L-elsbetiae_contig14090:2584..2593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14090 2585..2593 +
1691682958.9085-UTR-L-elsbetiae_contig14090:2584..25931691682958.9085-UTR-L-elsbetiae_contig14090:2584..2593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14090 2585..2593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.740235-CDS-L-elsbetiae_contig14090:2593..29631622815558.740235-CDS-L-elsbetiae_contig14090:2593..2963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14090 2594..2963 +
1691682958.9239469-CDS-L-elsbetiae_contig14090:2593..29631691682958.9239469-CDS-L-elsbetiae_contig14090:2593..2963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14090 2594..2963 +
1622815558.752272-CDS-L-elsbetiae_contig14090:3873..39891622815558.752272-CDS-L-elsbetiae_contig14090:3873..3989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14090 3874..3989 +
1691682958.9328747-CDS-L-elsbetiae_contig14090:3873..39891691682958.9328747-CDS-L-elsbetiae_contig14090:3873..3989Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14090 3874..3989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14090.3050.1

>prot_L-elsbetiae_contig14090.3050.1 ID=prot_L-elsbetiae_contig14090.3050.1|Name=mRNA_L-elsbetiae_contig14090.3050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MRHDPQNDASAPRPRAYRSRFLSVMLGSLSFLGMIDFSRSQSLAEHQLAD
DWVQTTAQTILAGGEAKELAVYRKLQSNRAKQTDQRAPTPLEEKFKARLT
QGMLTRLQEDRDPESIFEFENDAYKCGPSDVGGNVFDPSSYTCSATCELT
NGVPSTPIGVFH
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mRNA from alignment at L-elsbetiae_contig14090:2585..3989+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14090.3050.1 ID=mRNA_L-elsbetiae_contig14090.3050.1|Name=mRNA_L-elsbetiae_contig14090.3050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1405bp|location=Sequence derived from alignment at L-elsbetiae_contig14090:2585..3989+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGCGGCATGCGTCATGACCCACAAAATGACGCGTCCGCACCACGCCC
CCGTGCCTACCGTTCCCGATTCCTGTCCGTCATGCTTGGATCCCTGTCCT
TCCTGGGGATGATCGACTTTTCGCGGTCTCAATCGCTCGCAGAGCATCAA
CTCGCGGATGACTGGGTTCAGACAACCGCTCAAACCATCTTGGCCGGGGG
CGAGGCCAAGGAGCTTGCGGTGTACCGGAAGCTGCAGAGCAATAGAGCCA
AACAGACTGACCAGCGTGCCCCGACTCCGTTGGAGGAGAAATTCAAGGCC
CGGCTGACGCAGGGAATGTTGACCAGGCTTCAAGAGGACCGCGACCCCGA
AAGTATATTCGAGTTCGAGAACGACGCATGTAGGTGTATCTAGTCGAGAC
GGTTGCAGGCCAGTCTATGTACATACATTACACACATGTATCTACATATG
TAGTCTAGATGAGTTTGGAGATATTCCCGTTGTCAGAGAATATTGTTGTT
CCGAAATTTACATACTTCGAAGTACGTCCGCCTGTGGTCGCCGCTCCACA
ACGTAGCTCACAACCCTCGAACCTTTTGGAGCCGAGTCACTGCGGCCCCA
GCAGCCACCCCACTGCGTACCATTGCGCATCTCATGTGACGCAAAGTGTG
AGCGTTTATGGTTACCGTGCGCGTGTTTGGCGTTGAGGATCAGTTTGGCG
TCCCCGGGAAATGTCGGACTGTCTCGATCATGATCTTGACCGACAGGAAA
AAGATCCAGAATATCCAGCTATTTGGATAGTCGACTAGACGAACTTCCCG
TCTCACTCCCCAACGCGCGCCTCAATGTGTGTGTGTCTATGTATGTGTTC
ATCATGTAGGTGCAGTGGTTTTGCTGCGAGCGCGTGTTTCGTTGTGTTTT
GTGTGAAACCCGGTAGGTCGGTGTGTTTTTTTGCCGCGTTTCGGGTCATC
TCTCTGCATCGAGAGTTTTTGAAAATCGAATCAGGAGGAATTATTTTTCG
GGCAATCTCTCAATGCCGAGGTTTTCCTAAAAGGTTCTACAGTAGTCTAC
AGCCTGCGAAAAATTAGTTCCACGAGGAGCGTTGTACGCAAACCCGCGAA
AAGTATTGTATTGAGTCTACCATCTGATCATCTGATCAAGCAATATTTTA
ATGAAGATTTTCTCCCGTTTATCTATTTCCTTACCGTCGCCAAAAACTAT
TACTTCCCAACGGTGCTCACGATACCCTCCTCCCACCGCTTGTTCGCCCC
GGCTGCATGCACGGCTCATTGGATGTGTTGTCCTCGCAGACAAATGTGGT
CCCAGCGACGTGGGCGGCAACGTCTTCGATCCCTCCAGCTACACGTGCTC
GGCCACCTGCGAGCTGACCAACGGCGTTCCGAGCACACCGATCGGGGTCT
TCCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14090:2585..3989+

>mRNA_L-elsbetiae_contig14090.3050.1 ID=mRNA_L-elsbetiae_contig14090.3050.1|Name=mRNA_L-elsbetiae_contig14090.3050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig14090:2585..3989+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCATGACCCACAAAATGACGCGTCCGCACCACGCCCCCGTGCCTA
CCGTTCCCGATTCCTGTCCGTCATGCTTGGATCCCTGTCCTTCCTGGGGA
TGATCGACTTTTCGCGGTCTCAATCGCTCGCAGAGCATCAACTCGCGGAT
GACTGGGTTCAGACAACCGCTCAAACCATCTTGGCCGGGGGCGAGGCCAA
GGAGCTTGCGGTGTACCGGAAGCTGCAGAGCAATAGAGCCAAACAGACTG
ACCAGCGTGCCCCGACTCCGTTGGAGGAGAAATTCAAGGCCCGGCTGACG
CAGGGAATGTTGACCAGGCTTCAAGAGGACCGCGACCCCGAAAGTATATT
CGAGTTCGAGAACGACGCATATGCGTCATGACCCACAAAATGACGCGTCC
GCACCACGCCCCCGTGCCTACCGTTCCCGATTCCTGTCCGTCATGCTTGG
ATCCCTGTCCTTCCTGGGGATGATCGACTTTTCGCGGTCTCAATCGCTCG
CAGAGCATCAACTCGCGGATGACTGGGTTCAGACAACCGCTCAAACCATC
TTGGCCGGGGGCGAGGCCAAGGAGCTTGCGGTGTACCGGAAGCTGCAGAG
CAATAGAGCCAAACAGACTGACCAGCGTGCCCCGACTCCGTTGGAGGAGA
AATTCAAGGCCCGGCTGACGCAGGGAATGTTGACCAGGCTTCAAGAGGAC
CGCGACCCCGAAAGTATATTCGAGTTCGAGAACGACGCATACAAATGTGG
TCCCAGCGACGTGGGCGGCAACGTCTTCGATCCCTCCAGCTACACGTGCT
CGGCCACCTGCGAGCTGACCAACGGCGTTCCGAGCACACCGATCGGGGTC
TTCCACACAAATGTGGTCCCAGCGACGTGGGCGGCAACGTCTTCGATCCC
TCCAGCTACACGTGCTCGGCCACCTGCGAGCTGACCAACGGCGTTCCGAG
CACACCGATCGGGGTCTTCCAC
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