mRNA_L-elsbetiae_contig14079.3044.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14079.3044.1
Unique NamemRNA_L-elsbetiae_contig14079.3044.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14079.3044.1 vs. uniprot
Match: A0A6H5JFK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.730e-5
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = -3 
Query:  407 VRRSRSLTHAHVRPTQVMRLMLVLMCEPLFQRNVGFDPTAS 529
            ++RSR L    +   +VMRL+LVLMCEPLFQRNVGFDPTAS
Sbjct:  216 IQRSRELEANRI---EVMRLLLVLMCEPLFQRNVGFDPTAS 253
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BLAST of mRNA_L-elsbetiae_contig14079.3044.1 vs. uniprot
Match: D7FT96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT96_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.200e-5
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = -3 
Query:  407 VRRSRSLTHAHVRPTQVMRLMLVLMCEPLFQRNVGFDPTAS 529
            ++RSR L    +   +VMRL+LVLMCEPLFQRNVGFDPTAS
Sbjct:  225 IQRSRELEANRI---EVMRLLLVLMCEPLFQRNVGFDPTAS 262
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14079.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFK3_9PHAE2.730e-568.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT96_ECTSI3.200e-568.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14079contigL-elsbetiae_contig14079:2528..4756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size861
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14079.3044.1prot_L-elsbetiae_contig14079.3044.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14079 4025..4678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.1311293-UTR-L-elsbetiae_contig14079:2527..26101622815558.1311293-UTR-L-elsbetiae_contig14079:2527..2610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 2528..2610 +
1691682958.581502-UTR-L-elsbetiae_contig14079:2527..26101691682958.581502-UTR-L-elsbetiae_contig14079:2527..2610Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 2528..2610 +
1622815558.1414638-UTR-L-elsbetiae_contig14079:3978..40241622815558.1414638-UTR-L-elsbetiae_contig14079:3978..4024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 3979..4024 +
1691682958.6032698-UTR-L-elsbetiae_contig14079:3978..40241691682958.6032698-UTR-L-elsbetiae_contig14079:3978..4024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 3979..4024 +
1622815558.1626685-UTR-L-elsbetiae_contig14079:4678..47561622815558.1626685-UTR-L-elsbetiae_contig14079:4678..4756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 4679..4756 +
1691682958.6243563-UTR-L-elsbetiae_contig14079:4678..47561691682958.6243563-UTR-L-elsbetiae_contig14079:4678..4756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14079 4679..4756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.1525483-CDS-L-elsbetiae_contig14079:4024..46781622815558.1525483-CDS-L-elsbetiae_contig14079:4024..4678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14079 4025..4678 +
1691682958.6149838-CDS-L-elsbetiae_contig14079:4024..46781691682958.6149838-CDS-L-elsbetiae_contig14079:4024..4678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14079 4025..4678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14079.3044.1

>prot_L-elsbetiae_contig14079.3044.1 ID=prot_L-elsbetiae_contig14079.3044.1|Name=mRNA_L-elsbetiae_contig14079.3044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=218bp
MGRMPCPRGSREIESSSARCQARPADTQDASTSTTTTANNNNDNNNDRIR
NTPEGFPLPLPPQTLTPKFHETERTKSTTTPRATGPIYASTHWKRSGQIP
RSAGKGARTSEPASIASPVWGARARVSASVSVARGYREGLDRWRAWAIVW
FVGGLLVGFDGTARHGTARHPCIRHTHLCVLASEEETPTHADTRRTVNKY
VKCQNEKARPRVEIIWM*
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mRNA from alignment at L-elsbetiae_contig14079:2528..4756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14079.3044.1 ID=mRNA_L-elsbetiae_contig14079.3044.1|Name=mRNA_L-elsbetiae_contig14079.3044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2229bp|location=Sequence derived from alignment at L-elsbetiae_contig14079:2528..4756+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTCCGCCTGTGAAGACACCAAACTCGTGGGCGCTGTGTTGGGACCCAA
CCGAGGTGCCTCGATGCTATGCTAAGACCGCTGGTGCGTGGCGGGCGCAT
CAAAGATATTTTCCCCCAGGTTTCTTTGCCATGGGGAGTACGCACACCCC
ACAGTGAATCAAAACGCCTTTTTTGTCGCCTTTTTTGGAGAGGAAACGTT
GAATCAAGGGAGGGCAGTGACCGCAACTAACCAATGTCTCGACCGCTAGA
CCGCGAATCAAAGCGAAAGCTTCACAGGCGTCATCTCTATCTACTACTTC
ATGCTCGGAGATGCAAAACAAGGAACGATTCGGTGTAGATTTAGCGCAAC
GGGAGGTGTCTGGTACTGCTACCTGCTTCCACCGGCCGTTTTTTAATTTT
CCCGCCGCTCTCGGTCATTCGAAGAGACCAAACGGAATAATTATGCAGTT
CATCTCTCCGACCTCTGCCTATTCCTTCACACGCACATCATTGCCCTTCA
ATGGCGGTGAGGGTGGGAACACCAATGAAGCGAAATGACGCTGCTTGCGT
CTTGAGCCGAAAACATTCACAACGTTTCTTTTGAAGTGCTCCACAGCGAG
AGGAGTGCCAATCCCGAAAAGGGCGGCGCTGGAAATATCTCATCGATAGC
TAGCTGTCCGAGAACGTGTCGTCGGGTATTACGATCATACCCGTTGCGGA
GTAACGGAGCTTTGAAAATCGATCCAGGGGGTGTGTTAATCTTGTGTCGT
ATACGGTACCCGAGCAAAGGGGAGCCACCACCCACAAAAAAGGAGGTAAG
ACGGCAACACAACCCCGAAAAAAAACAGAAAATATGCCTACAACAGTCAG
TGAGCTGTCCCCCCGGAACGACTTTGTTGACAGATTGGACGTAAAAGATC
GCCGAAACATTTTTATTTAGACACTACCATACGTAGTTTAAAAATGCATA
ACAGGCCCGTGCATACCCCCCCCCACCGCAAGACGAGGCACCACGCAGAA
AAAATAAGCACAAACCTGTGCCGACATCTCCAGCTGCCGGGCGGGGAGGT
CGCTGGTGAACGAGCCCCCGTACGGCACCCCCTAGCCCACGGGGTCGTAC
ATAGCGATCACGCTCAGGAGGGAAAAAAAGAGCTCCGAGGCGAAGGGGGC
GTCCGCCCTGCACACCTCTGCTGCAAACCTTTTTTGGGGGGGTTGGACGT
TGCGTATTACGTATGCATGTATGTACATCGCGCATGGAAGGGTGCGGGGG
GGGGTAGAAGAGGCGGAACACGAACAAACTGAGGCCCGGGCGGTCGTTGT
GTTCGTTCGGCCGGTTTTCGTGTGTTATGCAGAAGCGTAGTTTTGAGGCG
GGTTCTCTGCAGCCAACTCATTTCTTGCGTAGAAACAGGTACGTACGTGT
ACACACAGCCAGTGGCAACCTTCTTAACACTCTTTTGCCTCGCGATGCAA
GGGTGCTGTCGGCAGGGAGAGCAAGAGCAGTCCTGCTGGAAGGATGGATG
GGGCGCATGCCCTGCCCGCGTGGGTCTCGGGAAATCGAGTCATCATCCGC
CCGGTGTCAGGCGAGACCGGCCGACACACAAGACGCCAGCACCAGCACCA
CCACCACCGCCAACAACAACAACGACAACAACAATGACCGCATCAGGAAC
ACTCCGGAGGGCTTTCCGCTTCCGCTTCCGCCTCAAACACTAACGCCTAA
GTTTCACGAAACTGAACGGACCAAAAGCACCACCACGCCCCGAGCTACCG
GTCCTATTTACGCGTCAACGCACTGGAAGCGGTCGGGTCAAATCCCACGT
TCCGCTGGAAAAGGGGCTCGCACATCAGAACCAGCATCAATCGCATCACC
TGTGTGGGGCGCACGTGCGCGTGTGTCAGCGAGCGTGAGCGTCGCACGGG
GGTACAGAGAGGGGCTGGATCGGTGGCGTGCTTGGGCGATTGTTTGGTTT
GTGGGTGGGTTACTGGTGGGGTTCGACGGCACGGCACGGCACGGCACGGC
ACGACACCCGTGCATACGACACACACATCTGTGCGTCCTGGCATCGGAAG
AAGAGACACCAACGCATGCCGACACGCGCCGAACCGTTAATAAATATGTT
AAATGTCAGAACGAAAAAGCCCGCCCGCGGGTGGAAATAATATGGATGTA
ACCATTCCCCCGACGCAAAAAGAAGAACCCCATCGACAGGCTGCAAAAAA
GGAAAGGGAGAGAGAGAGAGGAAATAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14079:2528..4756+

>mRNA_L-elsbetiae_contig14079.3044.1 ID=mRNA_L-elsbetiae_contig14079.3044.1|Name=mRNA_L-elsbetiae_contig14079.3044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1308bp|location=Sequence derived from alignment at L-elsbetiae_contig14079:2528..4756+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGCATGCCCTGCCCGCGTGGGTCTCGGGAAATCGAGTCATCATC
CGCCCGGTGTCAGGCGAGACCGGCCGACACACAAGACGCCAGCACCAGCA
CCACCACCACCGCCAACAACAACAACGACAACAACAATGACCGCATCAGG
AACACTCCGGAGGGCTTTCCGCTTCCGCTTCCGCCTCAAACACTAACGCC
TAAGTTTCACGAAACTGAACGGACCAAAAGCACCACCACGCCCCGAGCTA
CCGGTCCTATTTACGCGTCAACGCACTGGAAGCGGTCGGGTCAAATCCCA
CGTTCCGCTGGAAAAGGGGCTCGCACATCAGAACCAGCATCAATCGCATC
ACCTGTGTGGGGCGCACGTGCGCGTGTGTCAGCGAGCGTGAGCGTCGCAC
GGGGGTACAGAGAGGGGCTGGATCGGTGGCGTGCTTGGGCGATTGTTTGG
TTTGTGGGTGGGTTACTGGTGGGGTTCGACGGCACGGCACGGCACGGCAC
GGCACGACACCCGTGCATACGACACACACATCTGTGCGTCCTGGCATCGG
AAGAAGAGACACCAACGCATGCCGACACGCGCCGAACCGTTAATAAATAT
GTTAAATGTCAGAACGAAAAAGCCCGCCCGCGGGTGGAAATAATATGGAT
GTAAATGGGGCGCATGCCCTGCCCGCGTGGGTCTCGGGAAATCGAGTCAT
CATCCGCCCGGTGTCAGGCGAGACCGGCCGACACACAAGACGCCAGCACC
AGCACCACCACCACCGCCAACAACAACAACGACAACAACAATGACCGCAT
CAGGAACACTCCGGAGGGCTTTCCGCTTCCGCTTCCGCCTCAAACACTAA
CGCCTAAGTTTCACGAAACTGAACGGACCAAAAGCACCACCACGCCCCGA
GCTACCGGTCCTATTTACGCGTCAACGCACTGGAAGCGGTCGGGTCAAAT
CCCACGTTCCGCTGGAAAAGGGGCTCGCACATCAGAACCAGCATCAATCG
CATCACCTGTGTGGGGCGCACGTGCGCGTGTGTCAGCGAGCGTGAGCGTC
GCACGGGGGTACAGAGAGGGGCTGGATCGGTGGCGTGCTTGGGCGATTGT
TTGGTTTGTGGGTGGGTTACTGGTGGGGTTCGACGGCACGGCACGGCACG
GCACGGCACGACACCCGTGCATACGACACACACATCTGTGCGTCCTGGCA
TCGGAAGAAGAGACACCAACGCATGCCGACACGCGCCGAACCGTTAATAA
ATATGTTAAATGTCAGAACGAAAAAGCCCGCCCGCGGGTGGAAATAATAT
GGATGTAA
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