mRNA_L-elsbetiae_contig14077.3043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14077.3043.1
Unique NamemRNA_L-elsbetiae_contig14077.3043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5KCC0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.370e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+GA IKVLEDN GA A IENP SSARSKHIDVR+HFIRELFKSG
Sbjct:   18 SFIAPETSGAKIKVLEDNKGAPALIENPFSSARSKHIDVRFHFIRELFKSG 68
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5KQX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 9.800e-21
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+GA IKVLEDN GA A IENP SSARSKHIDVR+HFIRELFKSG
Sbjct:   21 SFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSG 71
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5KDZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.820e-20
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+GA IKVLEDN GA A IENP SSARSKHIDVR+HFIRELFKSG
Sbjct:   57 SFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSG 107
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5JYA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.880e-19
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+G+SI+VLEDN GA A ++NPLSSARSKHIDVRYHFIR LF+SG
Sbjct:   41 SFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSG 91
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5K3D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.510e-19
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+ PET+GA IKVLEDN GA A IENP SSARSKHIDVR+HFIRELFKSG
Sbjct:   94 SFIGPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSG 144
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.430e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SFVAPET+GA IKVLEDN GA A ++NPLSSARSKHIDVRYHFIRELFKSG
Sbjct: 2003 SFVAPETSGAKIKVLEDNKGALALVQNPLSSARSKHIDVRYHFIRELFKSG 2053
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BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5JYZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.380e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+GA IKVLEDN GA A +ENP SSARSKHIDVR+HFIRELF SG
Sbjct:    6 SFIAPETSGAKIKVLEDNKGAVALVENPFSSARSKHIDVRFHFIRELFTSG 56
[Close]
BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5JUF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUF9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.260e-19
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+G+ IKVLEDN GA A +ENP SSARSKHIDVR+HFIRELFKSG
Sbjct:  152 SFIAPETSGSKIKVLEDNKGALALVENPFSSARSKHIDVRFHFIRELFKSG 202
[Close]
BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5L0U8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.280e-18
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SF+APET+GA IKVLEDN GA A IENP SSARSKHIDVR+HFIRELFKSG
Sbjct:  152 SFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSG 202
[Close]
BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Match: A0A6H5KDT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.610e-18
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  178 SFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRYHFIRELFKSG 330
            SFVAPET+GA IKVLEDN GA A ++NP SSARSKHIDVRYHFIRELFKSG
Sbjct:  418 SFVAPETSGAKIKVLEDNKGALALVQNPFSSARSKHIDVRYHFIRELFKSG 468
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14077.3043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCC0_9PHAE6.370e-2184.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX9_9PHAE9.800e-2184.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ6_9PHAE1.820e-2084.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYA2_9PHAE1.880e-1978.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D9_9PHAE2.510e-1982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU45_9PHAE5.430e-1986.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYZ0_9PHAE7.380e-1980.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUF9_9PHAE8.260e-1980.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0U8_9PHAE1.280e-1884.31Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDT4_9PHAE1.610e-1884.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14077contigL-elsbetiae_contig14077:801..1133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_001760.2
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.090164-CDS-L-elsbetiae_contig14077:800..11331622815558.090164-CDS-L-elsbetiae_contig14077:800..1133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14077 801..1133 +
1691682958.565241-CDS-L-elsbetiae_contig14077:800..11331691682958.565241-CDS-L-elsbetiae_contig14077:800..1133Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14077 801..1133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14077.3043.1prot_L-elsbetiae_contig14077.3043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14077 801..1133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14077.3043.1

>prot_L-elsbetiae_contig14077.3043.1 ID=prot_L-elsbetiae_contig14077.3043.1|Name=mRNA_L-elsbetiae_contig14077.3043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
PGREGKRLAWTASSGGSQRHPLQLGRTRGETREMGNCAEEAFLSVVAEQE
GGAEIVAEFSFVAPETNGASIKVLEDNAGAKARIENPLSSARSKHIDVRY
HFIRELFKSGA
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mRNA from alignment at L-elsbetiae_contig14077:801..1133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14077.3043.1 ID=mRNA_L-elsbetiae_contig14077.3043.1|Name=mRNA_L-elsbetiae_contig14077.3043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=333bp|location=Sequence derived from alignment at L-elsbetiae_contig14077:801..1133+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGGACGAGAGGGAAAACGGCTCGCCTGGACCGCCTCGTCGGGAGGGTC
GCAACGCCACCCCCTACAGCTCGGTCGCACCCGGGGGGAGACCCGGGAGA
TGGGGAACTGCGCCGAGGAGGCCTTTCTGTCAGTGGTCGCGGAGCAGGAA
GGCGGAGCGGAGATAGTCGCGGAATTCTCGTTCGTGGCGCCTGAGACGAA
TGGGGCGAGCATCAAGGTGCTTGAGGACAACGCAGGGGCCAAGGCGCGAA
TTGAGAACCCCCTGAGTTCGGCGAGGAGTAAGCACATCGACGTGCGCTAC
CACTTCATTCGGGAGTTGTTCAAGTCTGGCGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14077:801..1133+

>mRNA_L-elsbetiae_contig14077.3043.1 ID=mRNA_L-elsbetiae_contig14077.3043.1|Name=mRNA_L-elsbetiae_contig14077.3043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig14077:801..1133+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGGACGAGAGGGAAAACGGCTCGCCTGGACCGCCTCGTCGGGAGGGTC
GCAACGCCACCCCCTACAGCTCGGTCGCACCCGGGGGGAGACCCGGGAGA
TGGGGAACTGCGCCGAGGAGGCCTTTCTGTCAGTGGTCGCGGAGCAGGAA
GGCGGAGCGGAGATAGTCGCGGAATTCTCGTTCGTGGCGCCTGAGACGAA
TGGGGCGAGCATCAAGGTGCTTGAGGACAACGCAGGGGCCAAGGCGCGAA
TTGAGAACCCCCTGAGTTCGGCGAGGAGTAAGCACATCGACGTGCGCTAC
CACTTCATTCGGGAGTTGTTCAAGTCTGGCGCACCAGGACGAGAGGGAAA
ACGGCTCGCCTGGACCGCCTCGTCGGGAGGGTCGCAACGCCACCCCCTAC
AGCTCGGTCGCACCCGGGGGGAGACCCGGGAGATGGGGAACTGCGCCGAG
GAGGCCTTTCTGTCAGTGGTCGCGGAGCAGGAAGGCGGAGCGGAGATAGT
CGCGGAATTCTCGTTCGTGGCGCCTGAGACGAATGGGGCGAGCATCAAGG
TGCTTGAGGACAACGCAGGGGCCAAGGCGCGAATTGAGAACCCCCTGAGT
TCGGCGAGGAGTAAGCACATCGACGTGCGCTACCACTTCATTCGGGAGTT
GTTCAAGTCTGGCGCA
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