mRNA_L-elsbetiae_contig1407.3039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1407.3039.1
Unique NamemRNA_L-elsbetiae_contig1407.3039.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1407.3039.1 vs. uniprot
Match: A0A6H5KNP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.420e-7
Identity = 33/71 (46.48%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    1 RTASRMKNMAKSASQAAVAESYQHLASYAAQLQKECPGSVAEVEQHPDGTFKRYGFMLGRAAFACAESPLK 213
            R+  R K  A  A QAA A S Q    Y  +L K  PGSVA VE+HPDG+FKR   ++ RAA   A    K
Sbjct:   21 RSVRRYKKNAVDALQAAAAGSIQQAPGYCRELVKMSPGSVANVERHPDGSFKRIAIVVNRAALVIARGLFK 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1407.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNP1_9PHAE2.420e-746.48MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1407contigL-elsbetiae_contig1407:23156..24662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004690.1
Exons2
Model size219
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1407.3039.1prot_L-elsbetiae_contig1407.3039.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1407 23171..24662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.7704191-UTR-L-elsbetiae_contig1407:23155..231701622815557.7704191-UTR-L-elsbetiae_contig1407:23155..23170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 23156..23170 +
1691682958.3881412-UTR-L-elsbetiae_contig1407:23155..231701691682958.3881412-UTR-L-elsbetiae_contig1407:23155..23170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 23156..23170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.7815685-CDS-L-elsbetiae_contig1407:23170..232871622815557.7815685-CDS-L-elsbetiae_contig1407:23170..23287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 23171..23287 +
1691682958.4046001-CDS-L-elsbetiae_contig1407:23170..232871691682958.4046001-CDS-L-elsbetiae_contig1407:23170..23287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 23171..23287 +
1622815557.793453-CDS-L-elsbetiae_contig1407:24575..246621622815557.793453-CDS-L-elsbetiae_contig1407:24575..24662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 24576..24662 +
1691682958.4129071-CDS-L-elsbetiae_contig1407:24575..246621691682958.4129071-CDS-L-elsbetiae_contig1407:24575..24662Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 24576..24662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1407.3039.1

>prot_L-elsbetiae_contig1407.3039.1 ID=prot_L-elsbetiae_contig1407.3039.1|Name=mRNA_L-elsbetiae_contig1407.3039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MKNMAKSASQAAVAESYQHLASYAAQLQKECPGSVAEVEQHPDGTFKRYG
FMLGRAAFACAESPLKV*
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mRNA from alignment at L-elsbetiae_contig1407:23156..24662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1407.3039.1 ID=mRNA_L-elsbetiae_contig1407.3039.1|Name=mRNA_L-elsbetiae_contig1407.3039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1507bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:23156..24662+ (Laminarionema elsbetiae ELsaHSoW15)
CGGACAGCTTCCCGCATGAAGAACATGGCGAAGTCGGCAAGTCAGGCGGC
GGTGGCGGAGTCCTACCAGCACCTGGCTTCCTACGCCGCCCAACTCCAGA
AGGAATGCCCCGGCAGTGTGGCGGAGGTCGAGGTGAGGAGGAGACTTCTG
TTTTTGTGTTGTGTTGGCTTACAGCATTGTGTGGACCTGGCGTATCGACT
GTAATGTATCGTGAAATTTTGCATGTGGTAGTGGGATGGATGGATAGTAT
TAGTATATTCTGGAGTCTATATTCTGAGGAGTCTATTCTGAGTATCTATC
ATACATAGACTATGTACATAGACTTGTACTAGTCTACAGCAGCATTCTTC
GGGCATCATACCAATCCTGTTCGCTTGCTGTGGGAGGTATGTATGCGCCC
GCACACGGCGCAAACGGCACGCCCCCATCTCCCTTTTCGTGTACACTTAC
GCGTGAGGCCTTGGTTGTCACAGCAGTATTCACAGCAGTATTTGCAGCGG
TTCGTGGAGCTTGTGTGCGTACTGAACGCAGTGTGTGTGATGTACTGCTG
TATGCAGCTCGATGTGTGACATCCCACCAACAAGAAAGAGCAAGATCCCG
TCTCTCCTGTGATTCGTCCCCTTGTGTGCATCATGTACAAGGCGTCTGGT
CATGCGTTGCCCGAGTGCGTTGAGTTGAAATGTGCTCAAAACTGACTGAC
AGAGGCAACGAAACAAGGGGACACAAGACCAAAGCACTACATACATGCCA
TTGACGTGTATAGAGTAAAGTGCGTTGAGGTAACATTTGACCTCAATTTG
AAACAAGTCCGTTAAAAGCAGTATTGAAACTCTAGTATATTAGCTCAATT
CGCATTATTGCAGTAAATTTATACTCCGTACTAAACAGGTGTACAATAAT
AGTCCATGGCAAATATGAATGCCATTTTCTCCAGCACAACTCTTATATTA
CCCGTTCTCGCCCCTCCCTCCCTGTCTGAGAACGGGGAGCCGTACCCTGC
GTTTCATTTCTCTCTTTTCCGTGTGCCCCCCCCCCCCCCTTCATATGTTT
TTGTGTTGTGGAAGAAAGAGGAAGAAACCTCCGTTGTCCGTGAGCCGCAC
ATGCCATTTAGGACGAGATAATGCTTCCTGGGACGCTTTTAACTCGCATG
CACGGCGGTTGCTTGGAGACTGCTTAGAGCGACTGCTTACCACCTGCGTC
CTGTCTCGATTCTTCGGCCGAAGTTGGGCGGCAGCGCAATGGCTCGTTTG
AACCCATCGAACCCCAACAATCTTTGTTCTCGATCTGAAATAGATGAAAA
CATTAGATCAAAACATTACTTGCTCCCGAGAGCCACTCATGTGGAAATCC
ATTTCATTTAATGTGTTTCTTCGCACCCGTTTTGTGTCTCTTTGTTTTAC
CTCACTCCTCCGGTCCTCAGCAACACCCCGACGGCACGTTCAAGCGGTAT
GGCTTCATGCTCGGGCGCGCAGCCTTCGCGTGTGCGGAGAGTCCGCTCAA
GGTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1407:23156..24662+

>mRNA_L-elsbetiae_contig1407.3039.1 ID=mRNA_L-elsbetiae_contig1407.3039.1|Name=mRNA_L-elsbetiae_contig1407.3039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:23156..24662+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACATGGCGAAGTCGGCAAGTCAGGCGGCGGTGGCGGAGTCCTA
CCAGCACCTGGCTTCCTACGCCGCCCAACTCCAGAAGGAATGCCCCGGCA
GTGTGGCGGAGGTCGAGATGAAGAACATGGCGAAGTCGGCAAGTCAGGCG
GCGGTGGCGGAGTCCTACCAGCACCTGGCTTCCTACGCCGCCCAACTCCA
GAAGGAATGCCCCGGCAGTGTGGCGGAGGTCGAGCAACACCCCGACGGCA
CGTTCAAGCGGTATGGCTTCATGCTCGGGCGCGCAGCCTTCGCGTGTGCG
GAGAGTCCGCTCAAGGTATGACAACACCCCGACGGCACGTTCAAGCGGTA
TGGCTTCATGCTCGGGCGCGCAGCCTTCGCGTGTGCGGAGAGTCCGCTCA
AGGTATGA
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