mRNA_L-elsbetiae_contig1407.3035.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1407.3035.1
Unique NamemRNA_L-elsbetiae_contig1407.3035.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1407.3035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1407contigL-elsbetiae_contig1407:13705..15330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1100
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1407.3035.1prot_L-elsbetiae_contig1407.3035.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1407 14494..15261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4782047-UTR-L-elsbetiae_contig1407:13704..138211622815557.4782047-UTR-L-elsbetiae_contig1407:13704..13821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 13705..13821 +
1691682958.248021-UTR-L-elsbetiae_contig1407:13704..138211691682958.248021-UTR-L-elsbetiae_contig1407:13704..13821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 13705..13821 +
1622815557.489346-UTR-L-elsbetiae_contig1407:14347..144931622815557.489346-UTR-L-elsbetiae_contig1407:14347..14493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 14348..14493 +
1691682958.256981-UTR-L-elsbetiae_contig1407:14347..144931691682958.256981-UTR-L-elsbetiae_contig1407:14347..14493Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 14348..14493 +
1622815557.5139582-UTR-L-elsbetiae_contig1407:15261..153301622815557.5139582-UTR-L-elsbetiae_contig1407:15261..15330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 15262..15330 +
1691682958.2815173-UTR-L-elsbetiae_contig1407:15261..153301691682958.2815173-UTR-L-elsbetiae_contig1407:15261..15330Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1407 15262..15330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.503768-CDS-L-elsbetiae_contig1407:14493..152611622815557.503768-CDS-L-elsbetiae_contig1407:14493..15261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 14494..15261 +
1691682958.269908-CDS-L-elsbetiae_contig1407:14493..152611691682958.269908-CDS-L-elsbetiae_contig1407:14493..15261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1407 14494..15261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1407.3035.1

>prot_L-elsbetiae_contig1407.3035.1 ID=prot_L-elsbetiae_contig1407.3035.1|Name=mRNA_L-elsbetiae_contig1407.3035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=256bp
MDSAWGQFFAPCAEQVRDAAAPEAEEARVAAEEAEQARRVAAVEEAEQAL
RVAAEGAEQAEQARRVAEEAEEALRVAAVEEAEQALRVAAKDAEDEARRV
AVAREASRAAAIRARRVAAVNEAERAAGIEEGRRSAAAKEAERIEQARRV
AVSVARATARVAERDAAAADTAEERDSDATAEAKITAENAQRAEEAVDAG
FAGYTGSTRDDRAKHRAERAGVEKRGGVQMALSFNPRLVTHLKGLENINL
SFLLD*
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mRNA from alignment at L-elsbetiae_contig1407:13705..15330+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1407.3035.1 ID=mRNA_L-elsbetiae_contig1407.3035.1|Name=mRNA_L-elsbetiae_contig1407.3035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:13705..15330+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGCTTGTGCTTCGAAAGCCCACTTCCTGGCAGCATGGTGGAACTCT
GCAGTGCTGAACGTCTGCTATGGGCGGTTATGACGGTCCTGACCGCAATT
GTCGCGGCAACTCCGTGGTGAGTGTTCTTTCTGGCGGTCGACGGCCTCTA
ATGCACCCACGCCTACGTGATTCCGCACAAGGACGGGATGGGCGACATCA
ACCGAAAACACCTGACATTGGTCAGCGTTTTGCACCGTGGTGTAGCCGAC
GAGTTAGGGTGCTGCCGGGTGGTGGTGCCTAGGACCATCATCGTCTTTGT
TTGTTTTTCCCCTTGAATCGCAATCTCTCCGAGGATGCGTTATCGAAGTC
GCAGCGGTACAGCAAGCGCCACGTGTGTGGGTCTGTCGCCAAGAACGGGA
GCTTGGCACGCACATAGGTTCAGGCATTTCCTCCCACGTTCGTGTGTCCC
CCTTACAGTGTGGTAACTACCAAGCAAATATCACAGCATGAGAGGGCATG
TACACATTGAAACCTGTTCAGCAGGTGGTTTTGGGTGCCGCCGACCAACA
GAAATGCAGGCCGAGAACTTTGTCTGAAAAAGTGTGTTTGTTCACATTTT
AATTCAGTGGCAACCATCTCCTCCCCCTACCGAACGTCTGCAGTGTCTAC
CGGGTCTACCGAGTCTGCTGAGTCTGCTAAGTCTACCGGGTCTGTCGGTG
ATGATGTCGGTGCTACCGCTCCTGCTGCAGCTCCTGCTGCCGCTCCTGCT
TCTTCATCGACAGAGGCTACCACGGCGGCTCCTGCTGCTATGGATTCAGC
ATGGGGGCAATTTTTTGCCCCTTGTGCAGAACAAGTTCGGGATGCTGCCG
CCCCGGAGGCCGAAGAAGCCCGTGTCGCAGCCGAAGAAGCGGAGCAGGCC
CGGCGTGTGGCCGCTGTCGAGGAGGCGGAGCAGGCTCTGCGTGTCGCAGC
CGAGGGGGCAGAACAAGCGGAGCAAGCCCGGCGTGTTGCCGAGGAGGCCG
AAGAAGCCCTGCGTGTGGCCGCTGTCGAGGAGGCGGAGCAGGCTCTGCGT
GTCGCAGCCAAAGACGCCGAAGACGAAGCTCGTCGTGTTGCTGTTGCCAG
GGAGGCTAGTCGTGCTGCTGCTATTAGAGCTCGTCGCGTTGCTGCTGTCA
ATGAAGCTGAGCGTGCTGCTGGTATCGAGGAAGGCCGGCGTTCTGCTGCT
GCCAAGGAAGCTGAACGCATCGAACAAGCCCGGCGTGTCGCTGTTTCTGT
CGCCCGTGCTACCGCTCGAGTAGCTGAACGTGACGCGGCTGCTGCCGACA
CCGCTGAAGAGAGGGATTCCGATGCTACCGCTGAGGCAAAAATCACCGCA
GAAAATGCTCAGCGAGCAGAAGAAGCAGTTGATGCTGGTTTCGCGGGTTA
CACTGGTTCAACTCGTGATGATCGTGCCAAACACCGTGCCGAACGTGCCG
GTGTTGAAAAGAGAGGCGGTGTTCAGATGGCGCTTTCTTTTAATCCACGT
CTCGTCACACATCTTAAAGGCCTTGAAAATATCAATCTCAGTTTTCTGTT
GGATTGATATGGTTTGTTGCTTATTTTTCATATTGGTTGTCTTCGTACTA
AGCAATCAAATTAAGTTGACACAGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1407:13705..15330+

>mRNA_L-elsbetiae_contig1407.3035.1 ID=mRNA_L-elsbetiae_contig1407.3035.1|Name=mRNA_L-elsbetiae_contig1407.3035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1536bp|location=Sequence derived from alignment at L-elsbetiae_contig1407:13705..15330+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTCAGCATGGGGGCAATTTTTTGCCCCTTGTGCAGAACAAGTTCG
GGATGCTGCCGCCCCGGAGGCCGAAGAAGCCCGTGTCGCAGCCGAAGAAG
CGGAGCAGGCCCGGCGTGTGGCCGCTGTCGAGGAGGCGGAGCAGGCTCTG
CGTGTCGCAGCCGAGGGGGCAGAACAAGCGGAGCAAGCCCGGCGTGTTGC
CGAGGAGGCCGAAGAAGCCCTGCGTGTGGCCGCTGTCGAGGAGGCGGAGC
AGGCTCTGCGTGTCGCAGCCAAAGACGCCGAAGACGAAGCTCGTCGTGTT
GCTGTTGCCAGGGAGGCTAGTCGTGCTGCTGCTATTAGAGCTCGTCGCGT
TGCTGCTGTCAATGAAGCTGAGCGTGCTGCTGGTATCGAGGAAGGCCGGC
GTTCTGCTGCTGCCAAGGAAGCTGAACGCATCGAACAAGCCCGGCGTGTC
GCTGTTTCTGTCGCCCGTGCTACCGCTCGAGTAGCTGAACGTGACGCGGC
TGCTGCCGACACCGCTGAAGAGAGGGATTCCGATGCTACCGCTGAGGCAA
AAATCACCGCAGAAAATGCTCAGCGAGCAGAAGAAGCAGTTGATGCTGGT
TTCGCGGGTTACACTGGTTCAACTCGTGATGATCGTGCCAAACACCGTGC
CGAACGTGCCGGTGTTGAAAAGAGAGGCGGTGTTCAGATGGCGCTTTCTT
TTAATCCACGTCTCGTCACACATCTTAAAGGCCTTGAAAATATCAATCTC
AGTTTTCTGTTGGATTGAATGGATTCAGCATGGGGGCAATTTTTTGCCCC
TTGTGCAGAACAAGTTCGGGATGCTGCCGCCCCGGAGGCCGAAGAAGCCC
GTGTCGCAGCCGAAGAAGCGGAGCAGGCCCGGCGTGTGGCCGCTGTCGAG
GAGGCGGAGCAGGCTCTGCGTGTCGCAGCCGAGGGGGCAGAACAAGCGGA
GCAAGCCCGGCGTGTTGCCGAGGAGGCCGAAGAAGCCCTGCGTGTGGCCG
CTGTCGAGGAGGCGGAGCAGGCTCTGCGTGTCGCAGCCAAAGACGCCGAA
GACGAAGCTCGTCGTGTTGCTGTTGCCAGGGAGGCTAGTCGTGCTGCTGC
TATTAGAGCTCGTCGCGTTGCTGCTGTCAATGAAGCTGAGCGTGCTGCTG
GTATCGAGGAAGGCCGGCGTTCTGCTGCTGCCAAGGAAGCTGAACGCATC
GAACAAGCCCGGCGTGTCGCTGTTTCTGTCGCCCGTGCTACCGCTCGAGT
AGCTGAACGTGACGCGGCTGCTGCCGACACCGCTGAAGAGAGGGATTCCG
ATGCTACCGCTGAGGCAAAAATCACCGCAGAAAATGCTCAGCGAGCAGAA
GAAGCAGTTGATGCTGGTTTCGCGGGTTACACTGGTTCAACTCGTGATGA
TCGTGCCAAACACCGTGCCGAACGTGCCGGTGTTGAAAAGAGAGGCGGTG
TTCAGATGGCGCTTTCTTTTAATCCACGTCTCGTCACACATCTTAAAGGC
CTTGAAAATATCAATCTCAGTTTTCTGTTGGATTGA
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