mRNA_L-elsbetiae_contig14063.3031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14063.3031.1
Unique NamemRNA_L-elsbetiae_contig14063.3031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14063.3031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14063contigL-elsbetiae_contig14063:710..1963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_001530.1
Exons2
Model size1191
Cds size1191
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.2343621-CDS-L-elsbetiae_contig14063:709..13391622815557.2343621-CDS-L-elsbetiae_contig14063:709..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14063 710..1339 -
1691682958.1172557-CDS-L-elsbetiae_contig14063:709..13391691682958.1172557-CDS-L-elsbetiae_contig14063:709..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14063 710..1339 -
1622815557.2504172-CDS-L-elsbetiae_contig14063:1402..19631622815557.2504172-CDS-L-elsbetiae_contig14063:1402..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14063 1403..1963 -
1691682958.1306481-CDS-L-elsbetiae_contig14063:1402..19631691682958.1306481-CDS-L-elsbetiae_contig14063:1402..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14063 1403..1963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14063.3031.1prot_L-elsbetiae_contig14063.3031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14063 710..1963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14063.3031.1

>prot_L-elsbetiae_contig14063.3031.1 ID=prot_L-elsbetiae_contig14063.3031.1|Name=mRNA_L-elsbetiae_contig14063.3031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=397bp
SSAKQRPRKHLRDEALRVFLLNEQSCPVASRWLESTKPLSLASVRLCEQC
RETIPFGVRVGSDTPRSVWEPGEPGEPSERSSIAASSSEALSAATATTRV
PPVKIAKLTSDVPYPAELLGLLACAGVFRWLSEVNFGGRYRLDVRGVAWP
QQVRRLTFKASFDHPVSDVAWPSGLERLSLEGVFNQTPIDSVVWPDGLGE
LTLGHAFNQTISSIGERAVGLRKLSLGWQFDQSLDGVALPKRLEVLTIVG
VYNRPIGGVLLPLGLKALTLGGHFNKPLNSTPLPRGLEFLSLGWAFNHPL
DRVDWPAELRELVLGYRFNQPANCVGFPPRMEKLELGVFSRQPLRGLAWP
PSFKCLTVGRAFDVTGGSLPEGSRVCRRGHAVCKVHRGGQDLILRM*
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mRNA from alignment at L-elsbetiae_contig14063:710..1963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14063.3031.1 ID=mRNA_L-elsbetiae_contig14063.3031.1|Name=mRNA_L-elsbetiae_contig14063.3031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1254bp|location=Sequence derived from alignment at L-elsbetiae_contig14063:710..1963- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCAGCCAAACAACGGCCTCGAAAACACCTGCGCGACGAAGCCCTACG
GGTTTTTCTGTTGAACGAGCAGAGCTGTCCGGTGGCCTCGAGATGGCTGG
AGTCTACAAAACCACTCAGCTTGGCGTCCGTGCGGCTGTGCGAACAGTGC
CGAGAAACGATCCCGTTTGGTGTTCGGGTCGGCAGCGATACCCCGCGGAG
CGTCTGGGAACCCGGAGAACCCGGGGAACCCAGCGAACGGTCCAGCATTG
CCGCGTCGTCGTCGGAAGCGTTGTCGGCAGCTACGGCTACGACGCGCGTA
CCGCCGGTGAAGATTGCCAAGCTCACGTCGGACGTGCCCTATCCCGCTGA
GCTTCTAGGCCTTCTCGCTTGCGCGGGGGTCTTTCGCTGGTTGAGCGAGG
TAAATTTCGGAGGCCGTTATCGTCTCGACGTGCGCGGAGTCGCCTGGCCG
CAACAGGTTCGAAGGCTGACGTTCAAGGCTTCCTTCGACCACCCGGTCAG
CGACGTCGCCTGGCCCTCGGGACTGGAGCGCTTGTCGCTGGAAGGGGTTT
TCAATCAAACGGTGGTCGGTGTCTCTTGGCCGGCGGGTTTGAAGGCCGTC
ATGTTCGGCAAAACGTTTGACCAGCCGATTGACAGCGTCGTCTGGCCTGA
CGGTCTTGGCGAGTTGACGCTTGGGCATGCGTTTAACCAGACGATCAGCA
GCATCGGCGAGAGGGCGGTGGGGCTGAGAAAACTCTCGCTCGGCTGGCAG
TTCGACCAGAGCTTGGACGGTGTGGCGCTGCCGAAGCGCCTTGAGGTCCT
GACTATTGTCGGGGTCTACAACAGACCCATTGGTGGAGTGCTGCTGCCGC
TGGGCCTGAAGGCTCTGACGCTAGGCGGTCACTTTAATAAGCCGCTGAAT
TCGACGCCGCTGCCGAGAGGCCTCGAGTTCCTCTCTTTGGGATGGGCGTT
CAACCACCCCCTTGATCGCGTGGACTGGCCGGCGGAGCTAAGGGAGCTCG
TGTTGGGGTATCGCTTCAACCAGCCCGCGAACTGTGTAGGGTTCCCGCCG
CGCATGGAAAAGTTGGAGCTGGGAGTTTTTTCGAGGCAACCTCTGAGAGG
TCTTGCCTGGCCGCCGTCGTTCAAGTGCCTCACGGTGGGCCGCGCGTTCG
ATGTCACGGGGGGGTCTCTGCCGGAAGGTTCCCGTGTGTGCCGCCGGGGG
CATGCGGTGTGCAAGGTGCATCGAGGGGGCCAAGACCTGATTCTCCGAAT
GTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14063:710..1963-

>mRNA_L-elsbetiae_contig14063.3031.1 ID=mRNA_L-elsbetiae_contig14063.3031.1|Name=mRNA_L-elsbetiae_contig14063.3031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2382bp|location=Sequence derived from alignment at L-elsbetiae_contig14063:710..1963- (Laminarionema elsbetiae ELsaHSoW15)
TCGTCAGCCAAACAACGGCCTCGAAAACACCTGCGCGACGAAGCCCTACG
GGTTTTTCTGTTGAACGAGCAGAGCTGTCCGGTGGCCTCGAGATGGCTGG
AGTCTACAAAACCACTCAGCTTGGCGTCCGTGCGGCTGTGCGAACAGTGC
CGAGAAACGATCCCGTTTGGTGTTCGGGTCGGCAGCGATACCCCGCGGAG
CGTCTGGGAACCCGGAGAACCCGGGGAACCCAGCGAACGGTCCAGCATTG
CCGCGTCGTCGTCGGAAGCGTTGTCGGCAGCTACGGCTACGACGCGCGTA
CCGCCGGTGAAGATTGCCAAGCTCACGTCGGACGTGCCCTATCCCGCTGA
GCTTCTAGGCCTTCTCGCTTGCGCGGGGGTCTTTCGCTGGTTGAGCGAGG
TAAATTTCGGAGGCCGTTATCGTCTCGACGTGCGCGGAGTCGCCTGGCCG
CAACAGGTTCGAAGGCTGACGTTCAAGGCTTCCTTCGACCACCCGGTCAG
CGACGTCGCCTGGCCCTCGGGACTGGAGCGCTTGTCGCTGGAAGGGGTTT
TCAATCAAACGTCGTCAGCCAAACAACGGCCTCGAAAACACCTGCGCGAC
GAAGCCCTACGGGTTTTTCTGTTGAACGAGCAGAGCTGTCCGGTGGCCTC
GAGATGGCTGGAGTCTACAAAACCACTCAGCTTGGCGTCCGTGCGGCTGT
GCGAACAGTGCCGAGAAACGATCCCGTTTGGTGTTCGGGTCGGCAGCGAT
ACCCCGCGGAGCGTCTGGGAACCCGGAGAACCCGGGGAACCCAGCGAACG
GTCCAGCATTGCCGCGTCGTCGTCGGAAGCGTTGTCGGCAGCTACGGCTA
CGACGCGCGTACCGCCGGTGAAGATTGCCAAGCTCACGTCGGACGTGCCC
TATCCCGCTGAGCTTCTAGGCCTTCTCGCTTGCGCGGGGGTCTTTCGCTG
GTTGAGCGAGGTAAATTTCGGAGGCCGTTATCGTCTCGACGTGCGCGGAG
TCGCCTGGCCGCAACAGGTTCGAAGGCTGACGTTCAAGGCTTCCTTCGAC
CACCCGGTCAGCGACGTCGCCTGGCCCTCGGGACTGGAGCGCTTGTCGCT
GGAAGGGGTTTTCAATCAAACGCCGATTGACAGCGTCGTCTGGCCTGACG
GTCTTGGCGAGTTGACGCTTGGGCATGCGTTTAACCAGACGATCAGCAGC
ATCGGCGAGAGGGCGGTGGGGCTGAGAAAACTCTCGCTCGGCTGGCAGTT
CGACCAGAGCTTGGACGGTGTGGCGCTGCCGAAGCGCCTTGAGGTCCTGA
CTATTGTCGGGGTCTACAACAGACCCATTGGTGGAGTGCTGCTGCCGCTG
GGCCTGAAGGCTCTGACGCTAGGCGGTCACTTTAATAAGCCGCTGAATTC
GACGCCGCTGCCGAGAGGCCTCGAGTTCCTCTCTTTGGGATGGGCGTTCA
ACCACCCCCTTGATCGCGTGGACTGGCCGGCGGAGCTAAGGGAGCTCGTG
TTGGGGTATCGCTTCAACCAGCCCGCGAACTGTGTAGGGTTCCCGCCGCG
CATGGAAAAGTTGGAGCTGGGAGTTTTTTCGAGGCAACCTCTGAGAGGTC
TTGCCTGGCCGCCGTCGTTCAAGTGCCTCACGGTGGGCCGCGCGTTCGAT
GTCACGGGGGGGTCTCTGCCGGAAGGTTCCCGTGTGTGCCGCCGGGGGCA
TGCGGTGTGCAAGGTGCATCGAGGGGGCCAAGACCTGATTCTCCGAATGT
AACCGATTGACAGCGTCGTCTGGCCTGACGGTCTTGGCGAGTTGACGCTT
GGGCATGCGTTTAACCAGACGATCAGCAGCATCGGCGAGAGGGCGGTGGG
GCTGAGAAAACTCTCGCTCGGCTGGCAGTTCGACCAGAGCTTGGACGGTG
TGGCGCTGCCGAAGCGCCTTGAGGTCCTGACTATTGTCGGGGTCTACAAC
AGACCCATTGGTGGAGTGCTGCTGCCGCTGGGCCTGAAGGCTCTGACGCT
AGGCGGTCACTTTAATAAGCCGCTGAATTCGACGCCGCTGCCGAGAGGCC
TCGAGTTCCTCTCTTTGGGATGGGCGTTCAACCACCCCCTTGATCGCGTG
GACTGGCCGGCGGAGCTAAGGGAGCTCGTGTTGGGGTATCGCTTCAACCA
GCCCGCGAACTGTGTAGGGTTCCCGCCGCGCATGGAAAAGTTGGAGCTGG
GAGTTTTTTCGAGGCAACCTCTGAGAGGTCTTGCCTGGCCGCCGTCGTTC
AAGTGCCTCACGGTGGGCCGCGCGTTCGATGTCACGGGGGGGTCTCTGCC
GGAAGGTTCCCGTGTGTGCCGCCGGGGGCATGCGGTGTGCAAGGTGCATC
GAGGGGGCCAAGACCTGATTCTCCGAATGTAA
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