mRNA_L-elsbetiae_contig1406.3029.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1406.3029.1 vs. uniprot
Match: D8LL54_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL54_ECTSI) HSP 1 Score: 762 bits (1968), Expect = 1.890e-266 Identity = 446/704 (63.35%), Postives = 514/704 (73.01%), Query Frame = 3 Query: 3 QVAADRVWEAVQVAESGYDKKRSLCGHCKGRFASISCEECRRGYCLRCSGSVHSQPDRLGHDLGPFQRPDKSTKASDRGVDGGSGKKRDAKKAKQAARSLPGCARRAEGFLKTMKLLKHKEKVNADEQRVKLKAKDRREMEEAEERARKQNEQYNLASAGDKNAATLVQKTCQGYMRKLQLRRESELRRRAQTEGAKLKTKESATRIQALYRGHSVRVSLKEPTDKSAEKQALGAGPTSATLAATTGGGI-VALPGSGSIQRRKAAAAERARRDCAFRRRWERETAIADMKHLEEEATRTFVSDVRWAVGKHEALQARSSLVKSRRASARSAWNRLQARQN*KSLLDPALPEKDPQRESLEKEIELQDIRILHQTNLFEVAEKGLYWTRAFIRQHYRRRAAQVASQAGAAHTFAWLEEELYALDHVVDFASKRLEGAADVLEQEFFRGWLMDQVARAGKQRLMIDLEQESLLETETARLSREKVHAFKTRTNLDELINAYHIDTQLGAERLGAELASAVAEEGTDEKFTCVSKITSLKNKEESVRRKVQVSLQRGLEEEIAAEDRYLNDETSGFTFAGDVADAPITHFAKIKASLMEPPHHPAHLSFDSWRKVYRAQPWLAAQTQAENKRKLARASTIQTLEEMRAVTAAARSQEAFAAKEVVALKAEIEDFEKRLAFSRSGVAGDATQEPLSNDDRIRMEIAL 2111 +VAADR EA++ A SG K+R LC HCK RFAS+SC ECR GYC RCS VHSQP RLGHDL PFQRP+K+T AS+RG+DGG GK+ DAKKAK+AARSLP CARRAE LK+M LLKHKE + ADE RVK+KAKDR+EMEEA+ER R+ VQ C+G MRKL L+RES++RRRAQ E +KLK KE+ TR+QALYRG SVR LKE A G T+A LAA G+ LPG + R K AAA RARRDC FRRRWERE AI+ M HLEEE+TRTF SDVRWAV H L+ +S+L+K+RR +ARSAW RLQ KS+LDPALP DP+R L KEIELQD RILHQT++FE+ EKGLYWTRAFIRQHYRR AA +AS+AG WL DQ++RAGKQRLMIDLEQE+LLE+ETARL +E HA K R NL EL+ AYHID QLGAER+GAELA+ +EEGTDE+F +++T LKNKE+SVR KVQ SLQRGLEEEIA+EDRYL +E T GDVADAPI HFAKIKASL+EPP HPAH+SF+SWRKVYRAQPWLAAQTQAENKRK ARASTI LEEMRAV AAA+SQEAFAAKEV +LKAEIE F+KRLAF RSG A QEPLS+D+RIRME+ + Sbjct: 95 KVAADRASEAMRAAGSGSSKERILCFHCKKRFASVSCTECRSGYCHRCSTHVHSQPGRLGHDLVPFQRPEKTTNASERGLDGG-GKRGDAKKAKRAARSLPDCARRAESCLKSMALLKHKEMIRADENRVKMKAKDRKEMEEAQERDRRXXXXXXXXXXXXXXXXXXVQNACKGLMRKLLLKRESDIRRRAQEEDSKLKLKETVTRVQALYRGFSVRHFLKE--------SAASVGETNAGLAAVLPEGVRPILPG---MSRDKTAAAARARRDCTFRRRWEREAAISKMIHLEEESTRTFASDVRWAVENHTMLRVKSNLLKTRRGAARSAWTRLQEE---KSVLDPALPPDDPERTRLAKEIELQDTRILHQTSMFEIVEKGLYWTRAFIRQHYRRHAAHLASKAG----------------------------------------WLSDQISRAGKQRLMIDLEQENLLESETARLLKENEHASKCRENLQELLKAYHIDAQLGAERVGAELANTASEEGTDERFLWTTRVTRLKNKEQSVRGKVQASLQRGLEEEIASEDRYLTEEV---TITGDVADAPIAHFAKIKASLVEPPRHPAHMSFESWRKVYRAQPWLAAQTQAENKRKAARASTIDGLEEMRAVVAAAKSQEAFAAKEVASLKAEIEAFQKRLAFKRSGAPEGAAQEPLSDDERIRMEVRV 740
BLAST of mRNA_L-elsbetiae_contig1406.3029.1 vs. uniprot
Match: A0A6H5L1P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P6_9PHAE) HSP 1 Score: 260 bits (664), Expect = 7.050e-70 Identity = 175/324 (54.01%), Postives = 205/324 (63.27%), Query Frame = 3 Query: 3 QVAADRVWEAVQVAESGYDKKRSLCGHCKGRFASISCE------------ECRRGYCLRCSGSVHSQPDRLGHDLGPFQRPDKSTKASDRGVDGGSGKKRDAKKAKQAARSLPGCARRAEGFLKTMKLLKHKEKVNADEQRVKLKAKDRREMEEAEERARKQNEQYNLASAGDKNAATLVQKTCQGYMRKLQLRRESELRRRAQTEGAKLKTKESATRIQALYRGHSVRVSLKEPTDKSAEKQALGAGPTSATLAATTGGGI-VALPGSGSIQRRKAAAAERARRDCAFRRRWERETAIADMKHLEEEATRTFVSDVRWAVGKH 935 + AADR EA++ A SG +K+R LC HC+ RFAS+SC E R RCS VHSQP RLGHDL PFQRP+K S+R +DGG GK+ AK AK+AARSLP CARRAE LK+M LLKHKE + ADE RVK+KAKDR+EMEEA+ERAR+ C+G MRKL ++RESELRRRAQ E +KLK KE+ATR+QALYRG SVR LKE A G T A LA G+ LPG + R K AAA RARRDCAFRRRWERE AI+ M HLEEE+TR + + VG H Sbjct: 1109 KAAADRASEAMRAAASGSNKERILCFHCRKRFASVSCTXXXXXXXXXXXXESRLSLNDRCSTHVHSQPGRLGHDLVPFQRPEKPINTSERRLDGG-GKRGHAKNAKRAARSLPDCARRAESCLKSMALLKHKEMIRADENRVKMKAKDRKEMEEAQERARRXXXXXXXXXXXXXXXXXXXXXXCKGLMRKLLIKRESELRRRAQEEDSKLKLKETATRVQALYRGFSVRHFLKE--------SAASVGETYAGLAVVLPEGVRPILPG---MSRDKTAAAARARRDCAFRRRWEREAAISKMIHLEEESTRYGIKNNTLFVGLH 1420
BLAST of mRNA_L-elsbetiae_contig1406.3029.1 vs. uniprot
Match: A0A6H5L2U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U6_9PHAE) HSP 1 Score: 234 bits (598), Expect = 5.680e-67 Identity = 132/171 (77.19%), Postives = 147/171 (85.96%), Query Frame = 3 Query: 1710 TSGFTFAGDVADAPITHFAKIKASLMEPPHHPAHLSFDSWRKVYRAQPWLAAQTQAENKRKLARASTIQTLEEMRAVTAAARSQEAFAAKEVVALKAEIEDFEKRLAFSRSGVAGDATQEPLSNDDRIRMEIALAKDRDKLVDQEERLERRRKANGNKQKELKKMEEELEA 2222 T T GDVADAPI HFAKIKASL+EPP HPAH+SF+SWRKVYRAQPWLAAQTQAENKRK ARASTI+ LEEMRAV AAA+SQEAFAAKEV +LKAE+E F+KRLAF RSG DA QEPLS+DDRIRMEI LAK ++KL D+EERLERRRKAN +K +ELKK E +LEA Sbjct: 5 TEEVTITGDVADAPIAHFAKIKASLVEPPRHPAHMSFESWRKVYRAQPWLAAQTQAENKRKAARASTIEGLEEMRAVVAAAKSQEAFAAKEVASLKAEMEAFQKRLAFKRSGAPEDAAQEPLSDDDRIRMEIDLAKTKEKLEDREERLERRRKANSHKNEELKKKEADLEA 175 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1406.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1406.3029.1 >prot_L-elsbetiae_contig1406.3029.1 ID=prot_L-elsbetiae_contig1406.3029.1|Name=mRNA_L-elsbetiae_contig1406.3029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=291bp MDQVARAGKQRLMIDLEQESLLETETARLSREKVHAFKTRTNLDELINAYback to top mRNA from alignment at L-elsbetiae_contig1406:624..11656- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1406.3029.1 ID=mRNA_L-elsbetiae_contig1406.3029.1|Name=mRNA_L-elsbetiae_contig1406.3029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=11033bp|location=Sequence derived from alignment at L-elsbetiae_contig1406:624..11656- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1406:624..11656- >mRNA_L-elsbetiae_contig1406.3029.1 ID=mRNA_L-elsbetiae_contig1406.3029.1|Name=mRNA_L-elsbetiae_contig1406.3029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1746bp|location=Sequence derived from alignment at L-elsbetiae_contig1406:624..11656- (Laminarionema elsbetiae ELsaHSoW15)back to top |