mRNA_L-elsbetiae_contig14057.3027.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14057.3027.1
Unique NamemRNA_L-elsbetiae_contig14057.3027.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14057.3027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14057contigL-elsbetiae_contig14057:948..4724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size934
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14057.3027.1prot_L-elsbetiae_contig14057.3027.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14057 3996..4724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.36-UTR-L-elsbetiae_contig14057:947..10311622815556.36-UTR-L-elsbetiae_contig14057:947..1031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 948..1031 +
1691682957.479751-UTR-L-elsbetiae_contig14057:947..10311691682957.479751-UTR-L-elsbetiae_contig14057:947..1031Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 948..1031 +
1622815556.3752909-UTR-L-elsbetiae_contig14057:3874..39951622815556.3752909-UTR-L-elsbetiae_contig14057:3874..3995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 3875..3995 +
1691682957.4899673-UTR-L-elsbetiae_contig14057:3874..39951691682957.4899673-UTR-L-elsbetiae_contig14057:3874..3995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14057 3875..3995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.3891108-CDS-L-elsbetiae_contig14057:3995..47241622815556.3891108-CDS-L-elsbetiae_contig14057:3995..4724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14057 3996..4724 +
1691682957.5003047-CDS-L-elsbetiae_contig14057:3995..47241691682957.5003047-CDS-L-elsbetiae_contig14057:3995..4724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14057 3996..4724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14057.3027.1

>prot_L-elsbetiae_contig14057.3027.1 ID=prot_L-elsbetiae_contig14057.3027.1|Name=mRNA_L-elsbetiae_contig14057.3027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MRWRSIEQALRPIDSLADIPKSTASRTEARLCAPAGLPTTDAKDNPCLPP
PPDFPAIGTKNGPPARLLVYRCLTRPLPFPSTSGCCRSSDIDSSSGDGES
GGPCLHTGLRSWATYHPKRATSRCRYSTLATICHRRVPHRWRHTSCSRGG
RAGGAASSKQFGSLPQRCRYMLEAEDGGARHGLPRRDPPVRRHAPHFGRS
PLWHQPSARSTDHGSAPEGRSPCVPSNKRSCPARVLPWSAGFL
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mRNA from alignment at L-elsbetiae_contig14057:948..4724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14057.3027.1 ID=mRNA_L-elsbetiae_contig14057.3027.1|Name=mRNA_L-elsbetiae_contig14057.3027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3777bp|location=Sequence derived from alignment at L-elsbetiae_contig14057:948..4724+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGAGCCAAAATACCAAGATAGCAAAATAGCAGGGGAGCAAAGGACGG
CCAAAAAGGAGGCGAGCGGCAACATGGCACGCAGGTAGACAAGTATATAT
GTGCTCTTGTACTAGATGACAGAGTGGTCTGCCCAGGGAGAAACGGGTCC
CCGTGACATACAGATGATCATACCACTACACCACCTGCGTATCCCCCATA
TCCAGGACCTGGAACAGTATATTTTCCCCAAGTACCACAAACATTCTACA
CTCTTCGAAAACAGCCGGGCTACATTCGCGTCGAGTCCGTTTCTTGATTG
GTGCAAAACTCATGGTGCTGGGCTTCGGGGCGCAGTCCCAAATATTCTCC
CGACTCACCGCAAAAAAGACTGTCAGGAAAAAGAAGTCGGGTGCACCAGC
ACATCGAAAGCGTGACTCACAGCTGCCTGCTACCGCTGCCAATGACATGC
GACGGCTCCTTCACACCACATGAGTAGGCCCTGCCAGCGGCTTGCGCTGT
GCTTCCTTGTGAGGGCCTCGCTCGATGACTTCGTGACCATCAAACTGTCA
GCTGAGGTGCCTCCGTCAGCTCTTTCTAAAGCGGCGATTTTTGCCCCTTT
GGAGAGGAAAATATTTGGCTTCAAGACAACTAGAAATTAGGCGCAGAGCT
TTTATCTGCAGAGAAGTCCAAGCTGTTGCGTTTGAGTGTGTTCGGGGGTC
TGGCAGCAGGGTGCTAAGGGGTGAACTGGAAAGTGCGCTTTTGGGAGGGC
CCGTGCGGTTGATTTTTGGCGTACCCAAAAAAAGGGCTTCTAAAACATTC
AGTCAATCGTGCTCATCACTGAGCCCCTGGATCCAAAAAGTAAACTCGTT
GTGGATCCCCTTACCGTCTCCTAATCCTTTTAGTCCTAGATGGCCATATG
GCGACGATTTGGCGACAGGCCTGGTACCAACTGTGAACTCAGCCACTTTA
CGATACTTACCCCAAAATTTGATTGGCGCACACACGGTTGACCGTTATTT
TATAGCCCGGTGAAAAAGATAAAAAGAGATCGCCCCCGGCATTTCTCAAA
GAAGTGCCTAGGGGGCGGCCTTCCCACGAAAAAAAAAAAAACTCCGCAGC
CCGGTCGAAAAGCCCCGGCGGCGTTCTTGTTCGTGTATCTCTCGTGGGGG
CTGTTTTGTTATCGTGGTGAGGATCATTCGTCGCCGCTGCTTATGTCACT
ATTAGACTAGATAGTCCAGTAGAAGCCACCGTATATACGACGAAGCATCT
AGTCCATGGGCAAATAGAGCAGAGCTTGATGTTTGGCGCGTCTTGCGATT
CTATTCGCTCAGTGAGTTGGTGGTGCGCGCCAACAGGCCAATGGATAACT
TCGTTCGGGACGTTTAGAAACAACCTGTTGACAACGCTCTTCATACATAA
CAGCAACGCCACCGATAGAACATGGTGTCCAACAACAGACAGAAAAACAC
GCAGAGACCGAGGTTTCTTGTGTCGGGAGGCTTGAGAGGTTCCTTTAATT
GATTCTCTGTTTTATTTTCAAAACAGCAACACAACCGTAACATCGCCTCT
AACAACAACAGCATACGGGGGAGACACACAGGAGAAAATATGAGCGGACA
AACATTACCCCGGCTGCCCCGGGGGCATCCTTACGGGTTTTGGGGCATGC
ATTACGTTATAAAGTTCTGTGCACCATTCTGCCACTGCACGAATCCCTCG
ACCGCGGCGTGATAAGGCGCCTGCGGCCGAAATAATCATCGCACCGTCGA
GCTTTCCTCAGGGCTTTTCGAGTCAAGCTCACGACTCAAACCACGAAGCC
GGGACTCCGTTCCACTCTTTCTGATTTCACTCATATGACTCGAAGTAGAT
ATAGCTAAATAGATAGATAGATAGATAGTCTATCTAGATGTATACTCAAC
CGCAATACTACAATCGTCGTCGGCACCACATAGGAGTACATCCCAAAACC
GGTCAACGCTTCAGCCACCTTTTCCGATGCCGCATCTGTTCTCGCTACAG
CCACCCTGACCCTAACCCTACCCCTAACCCTAACCCTTCTTCTGCCCCCC
CCGCCCCATCAAGGCGGGGGGGGCGTTCCATAACCCTAGTTACGGTATAC
TCCTACCTAGACGGTAGATACATAGTCTAGATATAGGGAGACGCATGAAC
GAGTTGCAGAGATCGAAGAATGTCATGGAGCGATCCACCAAGGATCCAGA
CCTGCAATGATAATGTCCATCGAAAGACACGAAAACACCAAGCTGTTAAA
TATACCACGCTGCGCCAGTTCTTGAGGGTATCGGCCAACCAACCCTACCC
TACTTCCCCATGTCTCAAACGAGTAAATAGGCAGCACCCCCTCTACATAC
ATACATCCGAACTCGCTCCTCCCCTTCAATCTCTCGATGTTTTCCAACTC
CAAGGGCCTCCGTCCTAAACATCTTCCGTGTTGGTAGGCACTTCACCAAA
TATCATGACGCGTTTAGACGAAAACATCGCCGAATTACAATGCTCCGTCA
GCTCAAGAAGACTCCACTAACCGCTCACCACGCTCAAATCACCGTTTGGT
ACGCTTTTGGCAATATTTGTTTTGGGGGGGATCGCCCCCTCAATGGGGTG
ACCGATTCAAGGTACATGGGTTGGAGCCATACTTGGGGCCAGAAAATATC
ACCCAATAACCTCCCAATAAGAGAGAGAGTGGCGACAAATCGTACAATCA
TTCGAGTGTGGTTGACTATATGTAGCTCCAGGCGGAACGGAAATATCTGT
AAATAACAACGATGGGGGGGGCGAAAACGCCCTCAATCAAAAGGTAAAAA
AGGGGCTTATCAAGCACGCTTCCTCGACATCATGTAAAACAAGGCTTGAA
TAGAGACTCCTACTCCCTGGGCGCAGTTCTTCTAGTCTTAGCCGCAATCG
CCTTTCCCCTCCGCCTCGCGTCCGAAGATACTCCTCAACAGGTGTTTATC
GGGAACCGTCCGCCTCTCCATCTATCTAGAAGCCGCCAATCGCCCGCCCA
TGGCCGTCGTGCACGGCTGGCTCGGCCTGGTCATCGCCGGCCTGAACGAT
GCGATGGAGAAGTATAGAGCAAGCCCTGCGCCCTATCGACTCCCTGGCGG
ACATTCCAAAGTCGACGGCATCACGGACTGAGGCTCGCCTCTGCGCCCCG
GCGGGGCTTCCGACTACTGACGCCAAGGACAATCCCTGCCTGCCTCCCCC
GCCAGATTTTCCAGCTATCGGCACCAAGAACGGCCCCCCCGCCAGGCTTC
TCGTCTATCGGTGCCTGACACGACCCTTACCTTTCCCCTCCACCAGCGGA
TGTTGCCGTTCTTCTGACATCGACAGTAGTAGCGGAGACGGAGAGTCTGG
CGGCCCCTGCCTGCATACAGGTTTGAGAAGCTGGGCGACTTACCACCCCA
AGAGGGCGACGTCCCGGTGTCGGTACAGCACACTGGCGACCATCTGCCAT
CGCCGTGTGCCCCATCGATGGCGACATACCAGCTGCAGCAGAGGCGGACG
TGCGGGCGGCGCGGCAAGCTCGAAACAGTTCGGGAGCCTACCGCAGCGGT
GTCGATATATGCTCGAGGCCGAGGACGGCGGTGCTCGGCATGGGCTTCCC
CGCCGCGATCCACCAGTACGACGTCACGCCCCGCACTTCGGACGAAGCCC
TCTGTGGCACCAGCCATCAGCGCGCAGCACCGACCACGGAAGTGCACCAG
AGGGGCGCTCCCCGTGTGTTCCAAGCAACAAACGCAGCTGTCCCGCCCGC
GTACTACCATGGAGCGCCGGCTTCCTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14057:948..4724+

>mRNA_L-elsbetiae_contig14057.3027.1 ID=mRNA_L-elsbetiae_contig14057.3027.1|Name=mRNA_L-elsbetiae_contig14057.3027.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig14057:948..4724+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATGGAGAAGTATAGAGCAAGCCCTGCGCCCTATCGACTCCCTGGC
GGACATTCCAAAGTCGACGGCATCACGGACTGAGGCTCGCCTCTGCGCCC
CGGCGGGGCTTCCGACTACTGACGCCAAGGACAATCCCTGCCTGCCTCCC
CCGCCAGATTTTCCAGCTATCGGCACCAAGAACGGCCCCCCCGCCAGGCT
TCTCGTCTATCGGTGCCTGACACGACCCTTACCTTTCCCCTCCACCAGCG
GATGTTGCCGTTCTTCTGACATCGACAGTAGTAGCGGAGACGGAGAGTCT
GGCGGCCCCTGCCTGCATACAGGTTTGAGAAGCTGGGCGACTTACCACCC
CAAGAGGGCGACGTCCCGGTGTCGGTACAGCACACTGGCGACCATCTGCC
ATCGCCGTGTGCCCCATCGATGGCGACATACCAGCTGCAGCAGAGGCGGA
CGTGCGGGCGGCGCGGCAAGCTCGAAACAGTTCGGGAGCCTACCGCAGCG
GTGTCGATATATGCTCGAGGCCGAGGACGGCGGTGCTCGGCATGGGCTTC
CCCGCCGCGATCCACCAGTACGACGTCACGCCCCGCACTTCGGACGAAGC
CCTCTGTGGCACCAGCCATCAGCGCGCAGCACCGACCACGGAAGTGCACC
AGAGGGGCGCTCCCCGTGTGTTCCAAGCAACAAACGCAGCTGTCCCGCCC
GCGTACTACCATGGAGCGCCGGCTTCCTAATGCGATGGAGAAGTATAGAG
CAAGCCCTGCGCCCTATCGACTCCCTGGCGGACATTCCAAAGTCGACGGC
ATCACGGACTGAGGCTCGCCTCTGCGCCCCGGCGGGGCTTCCGACTACTG
ACGCCAAGGACAATCCCTGCCTGCCTCCCCCGCCAGATTTTCCAGCTATC
GGCACCAAGAACGGCCCCCCCGCCAGGCTTCTCGTCTATCGGTGCCTGAC
ACGACCCTTACCTTTCCCCTCCACCAGCGGATGTTGCCGTTCTTCTGACA
TCGACAGTAGTAGCGGAGACGGAGAGTCTGGCGGCCCCTGCCTGCATACA
GGTTTGAGAAGCTGGGCGACTTACCACCCCAAGAGGGCGACGTCCCGGTG
TCGGTACAGCACACTGGCGACCATCTGCCATCGCCGTGTGCCCCATCGAT
GGCGACATACCAGCTGCAGCAGAGGCGGACGTGCGGGCGGCGCGGCAAGC
TCGAAACAGTTCGGGAGCCTACCGCAGCGGTGTCGATATATGCTCGAGGC
CGAGGACGGCGGTGCTCGGCATGGGCTTCCCCGCCGCGATCCACCAGTAC
GACGTCACGCCCCGCACTTCGGACGAAGCCCTCTGTGGCACCAGCCATCA
GCGCGCAGCACCGACCACGGAAGTGCACCAGAGGGGCGCTCCCCGTGTGT
TCCAAGCAACAAACGCAGCTGTCCCGCCCGCGTACTACCATGGAGCGCCG
GCTTCCTA
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