mRNA_L-elsbetiae_contig14051.3024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14051.3024.1
Unique NamemRNA_L-elsbetiae_contig14051.3024.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: D8LIT3_ECTSI (Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.270e-28
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLAAK 183
            RSYYRGTDGCLLVFDITDR SFEALPRWLDEAR NSANPDLSVMLIANKADLA K
Sbjct:   72 RSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEK 126
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A8J2S4D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4D0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.000e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLAAK 183
            RSYYRGTD CLLV+D+T R SF+ L RWL EAR N+ANPDL +ML+ NKADL +K
Sbjct:   79 RSYYRGTDCCLLVYDVTRRESFDHLGRWLQEARQNAANPDLVLMLVGNKADLESK 133
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: F0Y2Q0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Q0_AURAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.590e-17
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADL 174
            RSYYRGTD CLLV+D+T R SF+ LPRWL+EA+ N++NP+L +ML+ NKADL
Sbjct:   80 RSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADL 131
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A482RRM4_9ARCH (GTP-binding protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRM4_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 4.710e-17
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLAAK 183
            RSYYRG DGCLLVFD++++ SFE L  WL EAR NS NP+L +++I NKADL +K
Sbjct:   81 RSYYRGADGCLLVFDLSNKLSFENLSMWLSEARQNSNNPNLVILMIGNKADLTSK 135
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A7S3NND1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NND1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.650e-17
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADL 174
            RSYYRGTD CLLV+D+T R +F  LPRWL+EAR NSANP+L +ML+ NK DL
Sbjct:   93 RSYYRGTDCCLLVYDVTRRDTFVNLPRWLNEARQNSANPNLVLMLVGNKVDL 144
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: K8YRJ3_NANGC (Rab family gtpase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRJ3_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 8.720e-15
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 PLPSRYRSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLAA 180
            PL S + SYYR  DGCL+VFD+T R SFE + +W + AR  S NP L   L+ NKAD AA
Sbjct:    3 PLRSPFLSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAA 62
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A7S1KYF4_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1KYF4_NEODS)

HSP 1 Score: 70.5 bits (171), Expect = 2.310e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLAAK 183
            RSYYRG  G LLVFD+T+RASF++L  WLD+AR N  N  ++VML+ NK+DL +K
Sbjct:   74 RSYYRGACGALLVFDVTNRASFQSLQGWLDDARAN-CNVPITVMLVGNKSDLESK 127
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: Q382G2_TRYB2 (Small GTPase, putative n=5 Tax=Trypanozoon TaxID=39700 RepID=Q382G2_TRYB2)

HSP 1 Score: 69.7 bits (169), Expect = 3.740e-13
Identity = 30/53 (56.60%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLA 177
            RSYYRG  GCL+V+DIT+R S+E++P+WL++ R   A PD+ VMLI NK+D++
Sbjct:   75 RSYYRGAVGCLIVYDITERTSYESVPQWLNDVR-QLAGPDVVVMLIGNKSDMS 126
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A024UI87_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI87_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.990e-13
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADLA 177
            RSYYRG DG LLV+DI  R+SFE L RWL E + N  NP L +M++  KAD+A
Sbjct:   72 RSYYRGADGVLLVYDIGKRSSFEHLGRWLQECQQNCMNPSLEIMVVGMKADIA 124
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BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Match: A0A485LGB1_9STRA (Aste57867_20924 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGB1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 RSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVMLIANKADL 174
            RSYYRG DG LLV+DI  R+SFE L RWL E + N  NP L +M++  KADL
Sbjct:   72 RSYYRGADGVLLVYDIGKRSSFEHLGRWLQECQQNCMNPSLEIMVVGMKADL 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14051.3024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT3_ECTSI3.270e-2894.55Rab2B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A8J2S4D0_9STRA2.000e-1869.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y2Q0_AURAN1.590e-1767.31Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482RRM4_9ARCH4.710e-1763.64GTP-binding protein (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7S3NND1_9STRA5.650e-1769.23Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
K8YRJ3_NANGC8.720e-1555.00Rab family gtpase n=1 Tax=Nannochloropsis gaditana... [more]
A0A7S1KYF4_NEODS2.310e-1360.00Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
Q382G2_TRYB23.740e-1356.60Small GTPase, putative n=5 Tax=Trypanozoon TaxID=3... [more]
A0A024UI87_9STRA5.990e-1358.49Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A485LGB1_9STRA1.180e-1259.62Aste57867_20924 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14051contigL-elsbetiae_contig14051:272..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D8LIT3
Preferred nameRab2
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0017157,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045921,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0060627,GO:0065007,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1903530,GO:1903532
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG0098@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Ec32 ortholog descriptionRab2B, RAB family GTPase
Ec32 orthologEc-20_001420.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.2096665-CDS-L-elsbetiae_contig14051:271..4571622815556.2096665-CDS-L-elsbetiae_contig14051:271..457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14051 272..457 +
1691682957.411547-CDS-L-elsbetiae_contig14051:271..4571691682957.411547-CDS-L-elsbetiae_contig14051:271..457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14051 272..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14051.3024.1prot_L-elsbetiae_contig14051.3024.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14051 272..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14051.3024.1

>prot_L-elsbetiae_contig14051.3024.1 ID=prot_L-elsbetiae_contig14051.3024.1|Name=mRNA_L-elsbetiae_contig14051.3024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
PLPSRYRSYYRGTDGCLLVFDITDRASFEALPRWLDEARTNSANPDLSVM
LIANKADLAAK*
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mRNA from alignment at L-elsbetiae_contig14051:272..457+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14051.3024.1 ID=mRNA_L-elsbetiae_contig14051.3024.1|Name=mRNA_L-elsbetiae_contig14051.3024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig14051:272..457+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTCCCCTCGCGATATAGATCATACTACCGTGGAACCGACGGCTGCCT
GTTGGTGTTCGACATCACCGACAGGGCGTCATTCGAGGCGCTGCCTCGAT
GGCTTGACGAGGCCAGGACAAACTCGGCCAACCCTGACCTCTCCGTGATG
CTCATCGCCAACAAGGCAGACCTCGCAGCGAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14051:272..457+

>mRNA_L-elsbetiae_contig14051.3024.1 ID=mRNA_L-elsbetiae_contig14051.3024.1|Name=mRNA_L-elsbetiae_contig14051.3024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig14051:272..457+ (Laminarionema elsbetiae ELsaHSoW15)
CCACTCCCCTCGCGATATAGATCATACTACCGTGGAACCGACGGCTGCCT
GTTGGTGTTCGACATCACCGACAGGGCGTCATTCGAGGCGCTGCCTCGAT
GGCTTGACGAGGCCAGGACAAACTCGGCCAACCCTGACCTCTCCGTGATG
CTCATCGCCAACAAGGCAGACCTCGCAGCGAAGTGACCACTCCCCTCGCG
ATATAGATCATACTACCGTGGAACCGACGGCTGCCTGTTGGTGTTCGACA
TCACCGACAGGGCGTCATTCGAGGCGCTGCCTCGATGGCTTGACGAGGCC
AGGACAAACTCGGCCAACCCTGACCTCTCCGTGATGCTCATCGCCAACAA
GGCAGACCTCGCAGCGAAGTGA
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