prot_L-elsbetiae_contig14048.3021.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14048.3021.1
Unique Nameprot_L-elsbetiae_contig14048.3021.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length84
Homology
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BLAST of mRNA_L-elsbetiae_contig14048.3021.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.660e-21
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 0 
Query:    1 MPQRSNMPDCHGFIRNGCCRFLQNCRYNHPYNRLGMPIQDLPGGQRGAAPP----QHDS--GPPGAE-VINPQDRAPCDVFIN 76
            MPQR NMP+CHGF++NGCCRFL NCRY+HPY+RLGM  QD  G             H++  G  G + +I  QDRAPCD+F+N
Sbjct:  181 MPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGGSGVDAIIGVQDRAPCDMFLN 263
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14048.3021.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE2.660e-2154.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1000.10coord: 2..79
e-value: 2.8E-5
score: 26.0
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 4..32
score: 10.878
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 7..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14048contigL-elsbetiae_contig14048:3476..4135 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14048.3021.1mRNA_L-elsbetiae_contig14048.3021.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14048 3476..4135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14048.3021.1 ID=prot_L-elsbetiae_contig14048.3021.1|Name=mRNA_L-elsbetiae_contig14048.3021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MPQRSNMPDCHGFIRNGCCRFLQNCRYNHPYNRLGMPIQDLPGGQRGAAP
PQHDSGPPGAEVINPQDRAPCDVFINVSFVPPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf