mRNA_L-elsbetiae_contig14048.3021.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14048.3021.1
Unique NamemRNA_L-elsbetiae_contig14048.3021.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14048.3021.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.660e-21
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 MPQRSNMPDCHGFIRNGCCRFLQNCRYNHPYNRLGMPIQDLPGGQRGAAPP----QHDS--GPPGAE-VINPQDRAPCDVFIN 228
            MPQR NMP+CHGF++NGCCRFL NCRY+HPY+RLGM  QD  G             H++  G  G + +I  QDRAPCD+F+N
Sbjct:  181 MPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGGSGVDAIIGVQDRAPCDMFLN 263
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14048.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE2.660e-2154.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14048contigL-elsbetiae_contig14048:3476..4135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.7221742-CDS-L-elsbetiae_contig14048:3475..35521622815555.7221742-CDS-L-elsbetiae_contig14048:3475..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14048 3476..3552 +
1691682957.059551-CDS-L-elsbetiae_contig14048:3475..35521691682957.059551-CDS-L-elsbetiae_contig14048:3475..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14048 3476..3552 +
1622815555.7331614-CDS-L-elsbetiae_contig14048:3960..41351622815555.7331614-CDS-L-elsbetiae_contig14048:3960..4135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14048 3961..4135 +
1691682957.0709918-CDS-L-elsbetiae_contig14048:3960..41351691682957.0709918-CDS-L-elsbetiae_contig14048:3960..4135Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14048 3961..4135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14048.3021.1prot_L-elsbetiae_contig14048.3021.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14048 3476..4135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14048.3021.1

>prot_L-elsbetiae_contig14048.3021.1 ID=prot_L-elsbetiae_contig14048.3021.1|Name=mRNA_L-elsbetiae_contig14048.3021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MPQRSNMPDCHGFIRNGCCRFLQNCRYNHPYNRLGMPIQDLPGGQRGAAP
PQHDSGPPGAEVINPQDRAPCDVFINVSFVPPV*
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mRNA from alignment at L-elsbetiae_contig14048:3476..4135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14048.3021.1 ID=mRNA_L-elsbetiae_contig14048.3021.1|Name=mRNA_L-elsbetiae_contig14048.3021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig14048:3476..4135+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAGCGGTCCAACATGCCCGACTGCCACGGGTTCATCCGGAACGG
CTGCTGCCGGTTCCTCCAGAACTGCAGGTGCTAGGCTTGAACTCGGTATA
TATGCAATTGATGGACCAATTTTACGTCAATAAATATATTGTGGGATACC
GATGGAATCTCACGGGGGAGTCTCGGGTCTCCAATGTGGGTTAGGCTTTT
AGGTTCCATTTTTGATGATCCGTTTTTCTTTCATATTGTCAACAATTGCT
ATTCGCGAAATTGCGGAGGAACAAAAGTCGTATTATAAATACTGGTTTTA
GTGTGGAGAAAGTATGGTCTTGAGTACGTAGGTCAAACGAAAAAAAACGC
CCACCGAGTTCAAGCTTAGGAGGTTTAAGGGGGGGGCGGGGGCTGAGGCG
GCGGCGCGGACCGCGGTGTTTTTGACTCGGAGTACAACCACCTTTACAGC
CTAACCCTAACCCAACCCCTTCTCCGACATTGCAGGTACAACCACCCGTA
CAACCGCCTCGGCATGCCCATCCAGGACCTGCCCGGGGGCCAGAGAGGCG
CAGCCCCCCCCCAGCACGACAGCGGGCCCCCCGGCGCCGAGGTCATCAAC
CCCCAGGACCGTGCTCCGTGCGATGTGTTCATCAACGTGAGTTTCGTGCC
TCCAGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14048:3476..4135+

>mRNA_L-elsbetiae_contig14048.3021.1 ID=mRNA_L-elsbetiae_contig14048.3021.1|Name=mRNA_L-elsbetiae_contig14048.3021.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig14048:3476..4135+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCAGCGGTCCAACATGCCCGACTGCCACGGGTTCATCCGGAACGG
CTGCTGCCGGTTCCTCCAGAACTGCAGATGCCCCAGCGGTCCAACATGCC
CGACTGCCACGGGTTCATCCGGAACGGCTGCTGCCGGTTCCTCCAGAACT
GCAGGTACAACCACCCGTACAACCGCCTCGGCATGCCCATCCAGGACCTG
CCCGGGGGCCAGAGAGGCGCAGCCCCCCCCCAGCACGACAGCGGGCCCCC
CGGCGCCGAGGTCATCAACCCCCAGGACCGTGCTCCGTGCGATGTGTTCA
TCAACGTGAGTTTCGTGCCTCCAGTGTAGGTACAACCACCCGTACAACCG
CCTCGGCATGCCCATCCAGGACCTGCCCGGGGGCCAGAGAGGCGCAGCCC
CCCCCCAGCACGACAGCGGGCCCCCCGGCGCCGAGGTCATCAACCCCCAG
GACCGTGCTCCGTGCGATGTGTTCATCAACGTGAGTTTCGTGCCTCCAGT
GTAG
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