mRNA_L-elsbetiae_contig14029.3009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14029.3009.1
Unique NamemRNA_L-elsbetiae_contig14029.3009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14029.3009.1 vs. uniprot
Match: D7FTG6_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.090e-13
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  367 MGGASSRSGGGSKG------YDVVDREEPLLGDDGRGDGAGVGEVKRPRDESVSAGLLWNAGESPSLRSGGDASLGPAFGRHGRTG 606
            MGGASSR+G G         Y+VV+REEPLL + G          +   DES++AGLLW+AG++PSLR GGD+SLGPAFG+HGR+G
Sbjct:    1 MGGASSRNGRGGGADXXXXXYEVVEREEPLLREGG---------PEEQNDESMAAGLLWSAGDNPSLRLGGDSSLGPAFGQHGRSG 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14029.3009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTG6_ECTSI1.090e-1354.65MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14029contigL-elsbetiae_contig14029:643..2356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue3e-13
Seed eggNOG ortholog2880.D7FTG6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-21_001300.1
Exons2
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.5612435-CDS-L-elsbetiae_contig14029:642..11451622815554.5612435-CDS-L-elsbetiae_contig14029:642..1145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14029 643..1145 +
1691682956.4201102-CDS-L-elsbetiae_contig14029:642..11451691682956.4201102-CDS-L-elsbetiae_contig14029:642..1145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14029 643..1145 +
1622815554.573999-CDS-L-elsbetiae_contig14029:2163..23561622815554.573999-CDS-L-elsbetiae_contig14029:2163..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14029 2164..2356 +
1691682956.4327652-CDS-L-elsbetiae_contig14029:2163..23561691682956.4327652-CDS-L-elsbetiae_contig14029:2163..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14029 2164..2356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14029.3009.1prot_L-elsbetiae_contig14029.3009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14029 643..2356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14029.3009.1

>prot_L-elsbetiae_contig14029.3009.1 ID=prot_L-elsbetiae_contig14029.3009.1|Name=mRNA_L-elsbetiae_contig14029.3009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
AVTNGNGTTNGSITTNGSSGSTNGSSSSGGSTYNGTSPPLSPPPKASSKK
SPPPPPARPAVNGSSGNGYSSPAPSFPSSSRHQRPRRDPQEDPGLELTRE
PWRQQGTAGPDWESNEGESGVAMGGASSRSGGGSKGYDVVDREEPLLGDD
GRGDGAGVGEVKRPRDESVSAGLLWNAGESPSLRSGGDASLGPAFGRHGR
TGGAIEGKDGHGGWLLPDGDGQHNSRGRGGGG
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mRNA from alignment at L-elsbetiae_contig14029:643..2356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14029.3009.1 ID=mRNA_L-elsbetiae_contig14029.3009.1|Name=mRNA_L-elsbetiae_contig14029.3009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1714bp|location=Sequence derived from alignment at L-elsbetiae_contig14029:643..2356+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCACAAACGGCAACGGCACCACCAACGGGAGCATCACCACCAACGG
CAGCAGCGGCAGCACCAACGGCAGCAGCAGCAGCGGCGGCAGCACCTACA
ACGGCACCTCACCGCCCCTGTCACCCCCGCCCAAGGCGAGCAGCAAGAAA
TCCCCCCCGCCGCCCCCCGCGCGCCCCGCCGTCAACGGCAGCAGCGGCAA
CGGCTATTCGTCTCCCGCTCCCTCCTTCCCCTCTTCTTCCCGTCACCAGC
GCCCCCGCCGCGACCCTCAAGAAGACCCGGGGTTGGAGCTGACCCGCGAG
CCTTGGCGACAGCAGGGCACGGCCGGACCGGACTGGGAGTCGAACGAGGG
CGAGTCGGGCGTCGCGATGGGCGGGGCAAGCAGCAGGAGCGGCGGCGGGT
CTAAGGGATACGACGTCGTGGACCGCGAGGAACCGCTGCTAGGCGATGAC
GGCCGTGGCGATGGCGCCGGCGTGGGCGAGGTTAAGCGTCCCAGAGATGA
GAGGTGGGTGCATGCATGTTGTGCTGTATGTACTGTATATGCTGAATGTG
CGCGCGCGTGTGTGTGTTTGTGTGTGCCTTTTTTCTTTTTTTTTCGGGGG
TATTTACAAGGGTCTCCCAGAGGATATCACAGGACACGTAGGCCCCCCCT
CCCCCCCCGCCGTCGGCTCTCTACTTAACTTTTGTTGCTGTAGGGATTTT
GGTTTGGAAAACGATACGTGTGGATGTCCAAGGGCCTCCCAGAGGATATC
ACAGGACACGTAGGCCCCCCCTCCCCCCCCCGCGGGACCCATAAATTCGA
TTTTTGTCCGTGTAGGAATTAGTATAGGGGGACCCGTTCGGGGTTGTTCA
ACTCCCACCCCCCATCACGCCCGCTGTAATCTGCGGGCCCCCACTAGAAA
TTATACAGGCTACAGTATACCCCCCCCACCCTCCAGCGACTCGAAATTTC
GATTTTGGGGCCTACGTGTCCTGATTTTTTCTCCTGGGAGACCCTTGGTA
TTTATGTATGTATTTAGCTGCTGCATGTCATGTAGTCAGTCCGCTGACAT
GTTGTGACGCGAGACGGTCGAAAAAGAGCTGGTGTGCTTTCAGCCGATGC
GCGTCTCTGTACTTTTCGTCTCTCTGTGCCAGTCTGTGTTGTTGTGTTGA
AAAAAATGTCGGCTTTGACCGCCTGTGTTGCTGCTGCGCCCGGCGTGTGT
TGATGAGAGAGAGGCGCGGCAGGAGGTTGTACACGAAGTCAAGGTGTTAG
AGCCTTCGTCGCGTTTTGCTTGCGTGCTTTTTTAATTAATTCCAGGCTTT
TCGCAAAAGCGGGTGGCGCCGACTGCCCGTCAATCCACGAATGGAGCCGC
AACACAGGCGGCAGGCATCTACTACACCGCATGCGCACCATGGAGGCCTG
AGCCCCCCCACCCCCCCCGGCCCTTGCTACTTGTGGCCCCCTCTAAACCT
CAACCCCTCTCCGTCTCTCTATCCCAACCCGACCTACCTACCGACTGTTA
ATCCCCCAACAACCCTTGCAGCGTGTCCGCGGGCCTCCTGTGGAACGCGG
GCGAGAGCCCCTCCCTGCGATCTGGCGGCGACGCCTCCCTCGGCCCCGCG
TTCGGCCGTCACGGCAGGACGGGCGGGGCAATCGAGGGCAAGGACGGGCA
CGGCGGCTGGCTGCTCCCGGACGGCGACGGGCAGCACAACAGCAGAGGGA
GGGGCGGGGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14029:643..2356+

>mRNA_L-elsbetiae_contig14029.3009.1 ID=mRNA_L-elsbetiae_contig14029.3009.1|Name=mRNA_L-elsbetiae_contig14029.3009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig14029:643..2356+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCACAAACGGCAACGGCACCACCAACGGGAGCATCACCACCAACGG
CAGCAGCGGCAGCACCAACGGCAGCAGCAGCAGCGGCGGCAGCACCTACA
ACGGCACCTCACCGCCCCTGTCACCCCCGCCCAAGGCGAGCAGCAAGAAA
TCCCCCCCGCCGCCCCCCGCGCGCCCCGCCGTCAACGGCAGCAGCGGCAA
CGGCTATTCGTCTCCCGCTCCCTCCTTCCCCTCTTCTTCCCGTCACCAGC
GCCCCCGCCGCGACCCTCAAGAAGACCCGGGGTTGGAGCTGACCCGCGAG
CCTTGGCGACAGCAGGGCACGGCCGGACCGGACTGGGAGTCGAACGAGGG
CGAGTCGGGCGTCGCGATGGGCGGGGCAAGCAGCAGGAGCGGCGGCGGGT
CTAAGGGATACGACGTCGTGGACCGCGAGGAACCGCTGCTAGGCGATGAC
GGCCGTGGCGATGGCGCCGGCGTGGGCGAGGTTAAGCGTCCCAGAGATGA
GAGGCCGTCACAAACGGCAACGGCACCACCAACGGGAGCATCACCACCAA
CGGCAGCAGCGGCAGCACCAACGGCAGCAGCAGCAGCGGCGGCAGCACCT
ACAACGGCACCTCACCGCCCCTGTCACCCCCGCCCAAGGCGAGCAGCAAG
AAATCCCCCCCGCCGCCCCCCGCGCGCCCCGCCGTCAACGGCAGCAGCGG
CAACGGCTATTCGTCTCCCGCTCCCTCCTTCCCCTCTTCTTCCCGTCACC
AGCGCCCCCGCCGCGACCCTCAAGAAGACCCGGGGTTGGAGCTGACCCGC
GAGCCTTGGCGACAGCAGGGCACGGCCGGACCGGACTGGGAGTCGAACGA
GGGCGAGTCGGGCGTCGCGATGGGCGGGGCAAGCAGCAGGAGCGGCGGCG
GGTCTAAGGGATACGACGTCGTGGACCGCGAGGAACCGCTGCTAGGCGAT
GACGGCCGTGGCGATGGCGCCGGCGTGGGCGAGGTTAAGCGTCCCAGAGA
TGAGAGCGTGTCCGCGGGCCTCCTGTGGAACGCGGGCGAGAGCCCCTCCC
TGCGATCTGGCGGCGACGCCTCCCTCGGCCCCGCGTTCGGCCGTCACGGC
AGGACGGGCGGGGCAATCGAGGGCAAGGACGGGCACGGCGGCTGGCTGCT
CCCGGACGGCGACGGGCAGCACAACAGCAGAGGGAGGGGCGGGGGCGGGC
GTGTCCGCGGGCCTCCTGTGGAACGCGGGCGAGAGCCCCTCCCTGCGATC
TGGCGGCGACGCCTCCCTCGGCCCCGCGTTCGGCCGTCACGGCAGGACGG
GCGGGGCAATCGAGGGCAAGGACGGGCACGGCGGCTGGCTGCTCCCGGAC
GGCGACGGGCAGCACAACAGCAGAGGGAGGGGCGGGGGCGGG
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