mRNA_L-elsbetiae_contig1400.2995.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1400.2995.1
Unique NamemRNA_L-elsbetiae_contig1400.2995.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: D8LIZ8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.530e-26
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRNK 150
            + YMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQD+GEDWRNK
Sbjct:   61 FHYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDYGEDWRNK 110
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A835Z3W0_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.140e-19
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRNK 150
            + YMIEQGICYLTL +KGYPKRLAFLYLEE+H+ F+ EL++DHG DWR +
Sbjct:   61 FHYMIEQGICYLTLTDKGYPKRLAFLYLEELHEAFIEELQRDHGMDWRTQ 110
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A6V1P6Q6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6Q6_HETAK)

HSP 1 Score: 84.7 bits (208), Expect = 1.370e-18
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRNK 150
            + YMIE GICYLTL +KGYPKRLAFLYLEEIH+ FV EL++D G +WR+K
Sbjct:   65 FHYMIEDGICYLTLTDKGYPKRLAFLYLEEIHEAFVEELQRDEGSEWRSK 114
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A418DSX8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DSX8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.860e-18
Identity = 32/47 (68.09%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    7 YMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            Y+IE+G+CYLTL++K YPKRLAFLYLE+IH  F+ ELR+DHG++WR+
Sbjct:   19 YLIEEGVCYLTLSDKNYPKRLAFLYLEDIHGGFIDELRRDHGDNWRD 65
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A482SA30_9ARCH (Longin domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SA30_9ARCH)

HSP 1 Score: 78.6 bits (192), Expect = 5.030e-17
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    4 SYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDW 141
            SYMI+ GICYLTL EK YPKRLAFL+LEEI ++F G+LR +HGE+W
Sbjct:   28 SYMIDNGICYLTLTEKSYPKRLAFLFLEEISRDFEGDLRAEHGENW 73
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A485KKL0_9STRA (Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485KKL0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.330e-17
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            + Y+IE+G+CYLTL++K YPKRLAFLYLE+IH  F+ EL++DHG+ WR+
Sbjct:   61 FHYLIEEGVCYLTLSDKNYPKRLAFLYLEDIHAGFIDELQRDHGDSWRD 109
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A067CJ44_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJ44_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 2.920e-16
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            + Y+IE+G CYLT ++K YPKRLAFLYLEEIH  FV EL++DHG++WR+
Sbjct:   61 FHYLIEEGNCYLTFSDKNYPKRLAFLYLEEIHAGFVDELQRDHGDNWRD 109
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: H3GVF5_PHYRM (Uncharacterized protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GVF5_PHYRM)

HSP 1 Score: 78.2 bits (191), Expect = 4.320e-16
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            +SY+I++G+CYLTLA++G+PKRLAFLYLEE+H  FV EL +D G +WR+
Sbjct:   64 HSYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGNNWRD 112
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BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A484EDJ1_BRELC (Uncharacterized protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A484EDJ1_BRELC)

HSP 1 Score: 78.2 bits (191), Expect = 4.690e-16
Identity = 31/48 (64.58%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    4 SYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            SY+I++G+CYLTLA++G+PKRLAFLYLEE+H  FV EL +D G++WR+
Sbjct:   70 SYLIQEGVCYLTLADRGFPKRLAFLYLEEVHAGFVEELERDSGKNWRD 117
[Close]
BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Match: A0A6G0WBK5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBK5_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.770e-16
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 YSYMIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRN 147
            + Y+IE GICYLTL+++ YPKRLAFLYL++IH+ FV EL +DHG+ WR+
Sbjct:   61 FHYLIEDGICYLTLSDRQYPKRLAFLYLDDIHRAFVDELARDHGDSWRD 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1400.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ8_ECTSI1.530e-2694.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835Z3W0_9STRA1.140e-1972.00Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A6V1P6Q6_HETAK1.370e-1872.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A418DSX8_9STRA8.860e-1868.09Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A482SA30_9ARCH5.030e-1771.74Longin domain-containing protein n=1 Tax=archaeon ... [more]
A0A485KKL0_9STRA5.330e-1763.27Aste57867_8523 protein n=5 Tax=Aphanomyces TaxID=1... [more]
A0A067CJ44_SAPPC2.920e-1665.31Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
H3GVF5_PHYRM4.320e-1663.27Uncharacterized protein n=20 Tax=Peronosporaceae T... [more]
A0A484EDJ1_BRELC4.690e-1664.58Uncharacterized protein n=7 Tax=Peronosporaceae Ta... [more]
A0A6G0WBK5_9STRA5.770e-1663.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1400contigL-elsbetiae_contig1400:122..325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.5e-20
Seed eggNOG ortholog2880.D8LIZ8
Preferred nameSEC22B
KEGG koko:K08517
KEGG Pathwayko04130,ko04145,ko05134,map04130,map04145,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0002376,GO:0002474,GO:0002478,GO:0002479,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006996,GO:0007154,GO:0007267,GO:0008104,GO:0008150,GO:0009306,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010506,GO:0010507,GO:0010604,GO:0010639,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016241,GO:0016242,GO:0019222,GO:0019882,GO:0019884,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030139,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030666,GO:0030670,GO:0031090,GO:0031201,GO:0031224,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0034613,GO:0042175,GO:0042176,GO:0042590,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0045732,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048279,GO:0048280,GO:0048284,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061025,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0198738,GO:1902115,GO:1902116,GO:1902902,GO:1990668,GO:2000785
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsCOG5143@1,KOG0862@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size206
Cds size195
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.0623536-UTR-L-elsbetiae_contig1400:121..1301622815553.0623536-UTR-L-elsbetiae_contig1400:121..130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1400 122..130 +
1691682955.5840783-UTR-L-elsbetiae_contig1400:121..1301691682955.5840783-UTR-L-elsbetiae_contig1400:121..130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1400 122..130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815553.0775955-CDS-L-elsbetiae_contig1400:130..3251622815553.0775955-CDS-L-elsbetiae_contig1400:130..325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 131..325 +
1691682955.5984118-CDS-L-elsbetiae_contig1400:130..3251691682955.5984118-CDS-L-elsbetiae_contig1400:130..325Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1400 131..325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1400.2995.1prot_L-elsbetiae_contig1400.2995.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1400 131..325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1400.2995.1

>prot_L-elsbetiae_contig1400.2995.1 ID=prot_L-elsbetiae_contig1400.2995.1|Name=mRNA_L-elsbetiae_contig1400.2995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MIEQGICYLTLAEKGYPKRLAFLYLEEIHQEFVGELRQDHGEDWRNKASN
RLGGGGGDHCFFARG
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mRNA from alignment at L-elsbetiae_contig1400:122..325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1400.2995.1 ID=mRNA_L-elsbetiae_contig1400.2995.1|Name=mRNA_L-elsbetiae_contig1400.2995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=204bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:122..325+ (Laminarionema elsbetiae ELsaHSoW15)
TACAGTTACATGATCGAGCAGGGGATCTGCTACCTCACCCTCGCAGAAAA
GGGGTACCCGAAGAGGCTGGCGTTTCTCTACCTGGAGGAAATCCACCAGG
AGTTTGTGGGGGAGCTGCGGCAGGACCACGGGGAGGACTGGCGAAACAAG
GCAAGCAATCGCCTTGGGGGGGGGGGGGGGGATCATTGCTTTTTTGCCCG
GGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1400:122..325+

>mRNA_L-elsbetiae_contig1400.2995.1 ID=mRNA_L-elsbetiae_contig1400.2995.1|Name=mRNA_L-elsbetiae_contig1400.2995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig1400:122..325+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGAGCAGGGGATCTGCTACCTCACCCTCGCAGAAAAGGGGTACCC
GAAGAGGCTGGCGTTTCTCTACCTGGAGGAAATCCACCAGGAGTTTGTGG
GGGAGCTGCGGCAGGACCACGGGGAGGACTGGCGAAACAAGGCAAGCAAT
CGCCTTGGGGGGGGGGGGGGGGATCATTGCTTTTTTGCCCGGGGGATGAT
CGAGCAGGGGATCTGCTACCTCACCCTCGCAGAAAAGGGGTACCCGAAGA
GGCTGGCGTTTCTCTACCTGGAGGAAATCCACCAGGAGTTTGTGGGGGAG
CTGCGGCAGGACCACGGGGAGGACTGGCGAAACAAGGCAAGCAATCGCCT
TGGGGGGGGGGGGGGGGATCATTGCTTTTTTGCCCGGGGG
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