mRNA_L-elsbetiae_contig140.2993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI) HSP 1 Score: 369 bits (947), Expect = 5.900e-117 Identity = 200/249 (80.32%), Postives = 217/249 (87.15%), Query Frame = 3 Query: 1809 MRQLPRTAA--EGKDGANISFASEGGPFTVASPQES---SSSKKKALASVSSGHDLFASMEEGRSQDAAAGALARSRKVAKQTWADIGHGGIGNDAGTDESSSFYAGPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRPGDSATEASWRQQKSEGRSSKVRAHMERVSLTIKTEEVAARLKGERRVRGKARTRLRYNQWVNSMDNWLSDEVPKLADYDKRQFPAQNLRLRGGQQVHEALGGPMVI 2540 MR LPRT+A GKDGA+ SF SEGGPF A QE S S K +LAS+SS HDLF+S+EEGR QDA AGALAR+RKVAKQTWADIGHGGIGNDAGTDESSSFYA PSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQR GDSATEAS R QKSE RS K++ HMER+SL++KTEEVAARLK ERRVRGKARTRLRY++WVNSMDNWL DEVPKLADYDKRQFP Q+ R+RGGQQ+HEALGGPM I Sbjct: 1 MRHLPRTSAMRRGKDGASTSFGSEGGPFAEAPLQEQGEGSLSPKTSLASLSSCHDLFSSLEEGRLQDATAGALARARKVAKQTWADIGHGGIGNDAGTDESSSFYACPSERFTTTNSERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYSRWVNSMDNWLGDEVPKLADYDKRQFPVQSSRIRGGQQMHEALGGPMAI 249
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Match: D7FJI1_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI1_ECTSI) HSP 1 Score: 330 bits (845), Expect = 1.220e-101 Identity = 193/328 (58.84%), Postives = 224/328 (68.29%), Query Frame = 3 Query: 603 LALAAGEMQTERSAAIDSYMTSTQMAYMSGLHPPPSKVPVMDPYRYRQLLHDRWINRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGMIELDEFASFLGRSEAKGAPPGELSVWQKQEKQRQADDAEARSVMLQPIQDHKAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGISLDDLIRALGPQGMNLGVDDEDLRLLVKEMDTNGDGNVTLKEFASFINLDDHEPLYQPLFDGRRRNVNILQAWKIEQAPPAESPEEAFFKARADQLHSAAVPSK 1586 +A A E Q E S DSY+TSTQMAY S D + + R S L +T + R FF C + T+C + KSG IELDEFA FLG+SE KGA G+ S QK++ Q+QADD EARSV LQPIQDHKAQRIKNKL+HC+ +AVPNAS GLADNRTMFLKKQFAFL+E+AASRGISL++L++ALGP+GMNLGV+DEDLRLLVKEMDTN DGN+T+KEFA+F+NLDDH+PLYQPLFDGRRRNVNILQA +EQAPP ESPEE FFKARAD LHS AVPSK Sbjct: 1 MAAAVDETQMESSGVSDSYITSTQMAYTS------------DGFNVQA--------RDSVTLPPSST---AASRSFF-----GCT--------TPTATVCST--------------STSSAKSGGIELDEFADFLGQSETKGASSGDPSALQKEKTQQQADDVEARSVTLQPIQDHKAQRIKNKLAHCVQQAVPNASTGLADNRTMFLKKQFAFLSEDAASRGISLENLVQALGPRGMNLGVNDEDLRLLVKEMDTNCDGNITVKEFAAFLNLDDHDPLYQPLFDGRRRNVNILQAM-VEQAPPVESPEEEFFKARADHLHSVAVPSK 277
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Match: A0A7R9YBQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ5_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.580e-28 Identity = 78/250 (31.20%), Postives = 135/250 (54.00%), Query Frame = 3 Query: 765 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGMIELDEFASFLGRSEAKGAPPGELSVWQKQEKQRQADDAEARSVMLQPIQDHKAQRIKNKLSHCLNKAVP-NASAGLADNRTMFLKKQFAFLNEEAASRGISLDDLIRALGPQGMNLGVDDEDLRLLVKEMDTNGDGNVTLKEFASFINLDDHEPLYQPLFDGRRRNVNILQAWKIEQAP 1511 ++RA RL + LKYGS+R+FF +D N +G + +EFS L+ L PR QR +F+++D D+SG ++L+EF S L R A P R ++A + V L+ + +A+ +++ L + + + + + + +T +L F ++++ +S D+ ALGP G+N+ ++DLR++ + MD N D ++ EF F+N+DD +P Y P +DGRR +L +I AP Sbjct: 164 LDRAIGRLQQLLVLKYGSVRDFFHTFDENHNGKITLEEFSRTFKRRNLERLIPRREQRLIFERLDADQSGSLDLEEFKSALTRETAFSQPLD-----------RMREEAREKGVKLRRT-NPRAELVRDALLQKVTQRLRMSKESDSVERKTAYLLNIFKQIDKDMTGL-LSADEFAAALGPGGLNVCAKEDDLRMVFEAMDVNEDERISYSEFIDFLNVDDIDPEYNPFYDGRR--AYLLNLHRIAHAP 398
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Match: A0A7S2DS74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DS74_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.930e-19 Identity = 72/248 (29.03%), Postives = 119/248 (47.98%), Query Frame = 3 Query: 765 INRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGMIELDEFASFLGRSEA-------KGAPPGELSVWQKQEKQRQADDAEARSVMLQPIQDHKAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQFAFLNEEAASRGISLDDLIRALGPQGMNLGVDDEDLRLLVKEMDTNGDGNVTLKEFASFINLDDHEPLYQPLFDGRRRNVNILQ 1487 I +L +A KYGS+ E FR +D N DG L +EFS+ ++ L+ LFPR+ QR +F ID D S + LDEF F+ + K PP + + S L +D I + N + G + T+ + F +++ S + ++IRALGP+ +NL + D+++ LV+ MD N D +V+ +EF F+++ D +P Y +F+ R + + L+ Sbjct: 154 IAHVRDKLAALAVEKYGSVTEMFREFDDNKDGELSLEEFSQALSKRHLEKLFPRTDQRIIFKHIDADFSDSVALDEFQGFMDSAVGENYDLFTKTLPPN-------------TEPVKKLSASLTATKDKIVAGIFER-----NNQMKLPDGGDSAKETVI--RAFKHFDKDM-SGSLDRQEIIRALGPEHLNLKISDQEVLNLVEAMDENSDNSVSYREFTEFLDIHDIDPAYNLMFESRDKQLKRLR 380
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Match: A0A7S3ZVU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVU3_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 2.080e-17 Identity = 72/247 (29.15%), Postives = 116/247 (46.96%), Query Frame = 3 Query: 753 HDRWINRASQRLGDIATLKYGSIREFFRLYDSNCDGVLDFDEFSEGITMCQLDHLFPRSLQRTLFDKIDTDKSGMIELDEFASFLGRSEAKGAPPGELSVWQKQEKQ-RQADDAEARSVMLQPIQDHKAQRIKNKLSHCLNKAVPNASAGLADNRTMFLKKQ-FAFLNEEAASRGISLDDLIRALGPQGMNLGVDDEDLRLLVKEMDTNGDGNVTLKEFASFINLDDHEPLYQPLFDGRRRNVNILQ 1487 ++R N+A +RL +A KYG +R+ F D N D L DEFS + L+ LFPR QR ++D ID D S +E++E +L + P + + EK R +D + L P RI +++ + +A L + + Q + N +S +++ ALGP+ +NLGV D ++R LV +D +K+F + + DH P + P FD R R + L+ Sbjct: 170 NERVTNKARERLAQLALHKYGGVRQMFDCLDRNNDKELSLDEFSHALKRRNLEKLFPRDQQRLVYDAIDKDFSESVEVEEMVDWLEKD------PRAAAARRANEKLLRSQEDRNIGEITLPPHLREVKDRIADEV-YKRTRATKTEEGNLRQDEYLINGLQNWDVQNRSKGDGTLSPREIVDALGPKYLNLGVPDAEVRELVDYLDLGE--QCKIKQFVKKLEIGDHAPDFNPFFDARDRELVSLK 407 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig140.2993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig140.2993.1 >prot_L-elsbetiae_contig140.2993.1 ID=prot_L-elsbetiae_contig140.2993.1|Name=mRNA_L-elsbetiae_contig140.2993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=766bp MSARKRTQVGTTNRSSTLSPEDTGAASAPPDSKDQRRRASHAGRESSASSback to top mRNA from alignment at L-elsbetiae_contig140:12465..23016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig140.2993.1 ID=mRNA_L-elsbetiae_contig140.2993.1|Name=mRNA_L-elsbetiae_contig140.2993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10552bp|location=Sequence derived from alignment at L-elsbetiae_contig140:12465..23016+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig140:12465..23016+ >mRNA_L-elsbetiae_contig140.2993.1 ID=mRNA_L-elsbetiae_contig140.2993.1|Name=mRNA_L-elsbetiae_contig140.2993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4596bp|location=Sequence derived from alignment at L-elsbetiae_contig140:12465..23016+ (Laminarionema elsbetiae ELsaHSoW15)back to top |