prot_L-elsbetiae_contig14.2983.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14.2983.1
Unique Nameprot_L-elsbetiae_contig14.2983.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length212
Homology
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BLAST of mRNA_L-elsbetiae_contig14.2983.1 vs. uniprot
Match: A0A6H5L6C7_9PHAE (GOLD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6C7_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 1.300e-75
Identity = 124/207 (59.90%), Postives = 158/207 (76.33%), Query Frame = 0 
Query:    5 RSAVALAGLSAAHGIAPTPIQLDVTGGETRCLADTVRVNEDTTFSFRAVEMTGTSTENIKVIVEHPNGQSPYVTDLTTAKEEHRVEADKGEGGFTYKVCFQSFQAKGRKARVELTETTVWPLAEARPKVPKHLESVDRLLQHAKRVAESLEQQLKEGLTSESEWTDSDRVLRSRINKVAGFTILVLLSVSGWQLMLLNRFFRSKKLI 211
            R A+ L GLS A+GI PTPI +DV  GETRC+ D+VRV EDTTF+FRA  + G  ++ +KVI+EHPNG+ P++ +LT  +E HRV  DKGEGG TY+VCF++ + KGR  RVEL ETT+  + +   +V KHL+ VD LL+HAK +A+SL +QL+E  +SE E  DSD+VLRSRIN VA FT+L LLSVSGWQL LLN+FFRSKKLI
Sbjct:    4 RYALVLVGLSIAYGIEPTPILIDVLPGETRCVGDSVRVGEDTTFTFRAAPVDGPFSDKVKVILEHPNGEEPFIAELTEERESHRV--DKGEGGGTYRVCFRNMKTKGRSTRVELVETTL-AVTQGASQVAKHLQPVDELLKHAKELAKSLSEQLRENASSEREGLDSDKVLRSRINIVAAFTVLGLLSVSGWQLSLLNKFFRSKKLI 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14.2983.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6C7_9PHAE1.300e-7559.90GOLD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 137..157
NoneNo IPR availablePANTHERPTHR22811:SF58TMED10 PROTEINcoord: 23..211
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..201
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..181
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..211
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.558
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 23..206
e-value: 3.1E-4
score: 29.9
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 26..206
e-value: 6.3E-18
score: 65.4
IPR015720TMP21-relatedPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 23..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14contigL-elsbetiae_contig14:1652..6014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14.2983.1mRNA_L-elsbetiae_contig14.2983.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14 1333..7056 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14.2983.1 ID=prot_L-elsbetiae_contig14.2983.1|Name=mRNA_L-elsbetiae_contig14.2983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=212bp
MKLLRSAVALAGLSAAHGIAPTPIQLDVTGGETRCLADTVRVNEDTTFSF
RAVEMTGTSTENIKVIVEHPNGQSPYVTDLTTAKEEHRVEADKGEGGFTY
KVCFQSFQAKGRKARVELTETTVWPLAEARPKVPKHLESVDRLLQHAKRV
AESLEQQLKEGLTSESEWTDSDRVLRSRINKVAGFTILVLLSVSGWQLML
LNRFFRSKKLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720TMP21-related